Wall clock time and date at job start Tue Mar 31 2020 21:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46835 * 299.99923 * 3 2 1 6 6 H 1.48496 * 109.46808 * 59.99812 * 3 2 1 7 7 C 1.38818 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99651 * 198.04087 * 7 2 1 9 9 N 1.36937 * 120.00027 * 18.03748 * 7 2 1 10 10 C 1.46925 * 120.63135 * 28.30137 * 9 7 2 11 11 C 1.53187 * 108.77859 * 126.36378 * 10 9 7 12 12 C 1.53049 * 109.30702 * 54.63501 * 11 10 9 13 13 F 1.39908 * 109.45563 * 178.61378 * 12 11 10 14 14 F 1.39896 * 109.46053 * 58.65701 * 12 11 10 15 15 C 1.53035 * 109.53762 * 298.63214 * 12 11 10 16 16 H 1.08998 * 109.52633 * 301.39733 * 15 12 11 17 17 C 1.53005 * 109.49482 * 181.31655 * 15 12 11 18 18 N 1.46502 * 109.46930 * 175.16017 * 17 15 12 19 19 C 1.34773 * 119.99805 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00018 * 354.86974 * 19 18 17 21 21 C 1.50697 * 120.00049 * 174.86995 * 19 18 17 22 22 C 1.53004 * 115.55234 * 294.61174 * 21 19 18 23 23 C 1.53000 * 109.46754 * 295.86552 * 22 21 19 24 24 F 1.39899 * 109.47038 * 176.58461 * 23 22 21 25 25 C 1.53007 * 117.50093 * 80.27778 * 21 19 18 26 26 C 1.53002 * 117.50301 * 148.93833 * 21 19 18 27 27 C 1.46923 * 120.63170 * 208.27254 * 9 7 2 28 28 H 0.96998 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58620 * 246.15635 * 10 9 7 30 30 H 1.09003 * 109.58466 * 6.57797 * 10 9 7 31 31 H 1.09001 * 109.49913 * 174.58203 * 11 10 9 32 32 H 1.08997 * 109.50173 * 294.68737 * 11 10 9 33 33 H 1.09000 * 109.46951 * 55.16571 * 17 15 12 34 34 H 1.08998 * 109.47587 * 295.16731 * 17 15 12 35 35 H 0.96994 * 119.99985 * 0.02562 * 18 17 15 36 36 H 1.08995 * 109.47136 * 175.86246 * 22 21 19 37 37 H 1.09001 * 109.46862 * 55.85897 * 22 21 19 38 38 H 1.08996 * 109.47684 * 56.57902 * 23 22 21 39 39 H 1.09007 * 109.47169 * 296.58154 * 23 22 21 40 40 H 1.09001 * 117.50166 * 215.00541 * 25 21 19 41 41 H 1.08997 * 117.49438 * 0.02860 * 25 21 19 42 42 H 1.09001 * 117.49569 * 359.97438 * 26 21 19 43 43 H 1.08995 * 117.50298 * 144.97009 * 26 21 19 44 44 H 1.09005 * 109.58602 * 113.84452 * 27 9 7 45 45 H 1.09010 * 109.58524 * 353.42466 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0505 -1.2253 0.2891 9 7 1.3760 -2.3588 -0.3683 10 6 0.2497 -2.3277 -1.3112 11 6 0.5427 -3.2962 -2.4614 12 6 0.8460 -4.6833 -1.8901 13 9 1.0831 -5.5778 -2.9394 14 9 -0.2469 -5.1267 -1.1378 15 6 2.0847 -4.6082 -0.9945 16 1 2.9313 -4.2395 -1.5737 17 6 2.4064 -6.0015 -0.4501 18 7 3.6564 -5.9512 0.3123 19 6 4.1393 -7.0694 0.8891 20 8 3.4940 -8.0957 0.8566 21 6 5.4812 -7.0445 1.5744 22 6 6.6836 -6.7935 0.6622 23 6 6.8212 -7.9500 -0.3300 24 9 7.8723 -7.6836 -1.2139 25 6 5.5396 -6.4741 2.9930 26 6 5.6829 -7.9813 2.7672 27 6 1.8092 -3.6545 0.1722 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6633 -2.6328 -0.8001 30 1 0.1306 -1.3183 -1.7049 31 1 -0.3257 -3.3550 -3.1176 32 1 1.4034 -2.9396 -3.0271 33 1 2.5150 -6.6996 -1.2801 34 1 1.5972 -6.3333 0.2003 35 1 4.1361 -5.1130 0.4025 36 1 7.5887 -6.7225 1.2653 37 1 6.5370 -5.8617 0.1159 38 1 5.8933 -8.0596 -0.8913 39 1 7.0282 -8.8722 0.2132 40 1 6.4345 -5.9201 3.2763 41 1 4.6073 -6.1173 3.4306 42 1 4.8448 -8.6154 3.0564 43 1 6.6719 -8.4192 2.9017 44 1 1.0233 -4.0679 0.8044 45 1 2.7191 -3.5206 0.7574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733479346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:19 Heat of formation + Delta-G solvation = -172.197194 kcal Electronic energy + Delta-G solvation = -30293.037418 eV Core-core repulsion = 25702.685824 eV Total energy + Delta-G solvation = -4590.351594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.01575 -48.61198 -47.97164 -41.31100 -39.11342 -37.93227 -36.38851 -34.38754 -32.45904 -32.12193 -31.94335 -27.63089 -27.00480 -25.20579 -24.22433 -23.76691 -23.26516 -22.69107 -21.27242 -20.56157 -18.95252 -18.33546 -18.10902 -17.72811 -17.27391 -17.09753 -16.91458 -16.82141 -16.57215 -16.29301 -15.99257 -15.61290 -15.51197 -15.31982 -14.84664 -14.80808 -14.62583 -14.29273 -14.18121 -13.83848 -13.73127 -13.44711 -13.27090 -13.18958 -13.07716 -13.03748 -12.62198 -12.58853 -12.41216 -12.27096 -12.17511 -11.91925 -11.81436 -11.63991 -11.50563 -11.36412 -11.02159 -10.81136 -10.58178 -10.21634 -8.81185 -7.91521 -5.38079 1.46084 1.49769 1.53617 1.62497 1.94126 2.49461 2.64136 2.78291 3.14264 3.21874 3.26342 3.39868 3.49831 3.55301 3.67046 3.75487 3.78789 3.89552 3.99243 4.05534 4.14677 4.19312 4.23082 4.47265 4.50370 4.54363 4.62659 4.74537 4.76099 4.82180 4.83850 4.86802 4.94571 5.00300 5.06920 5.09992 5.22380 5.25904 5.29666 5.56701 5.66706 6.33242 6.43472 7.07843 7.12111 7.75511 8.28610 9.16917 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003594 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.007684 B = 7789.437971 C = 8937.401814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.264 4.264 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.169 4.169 12 C 0.299 3.701 13 F -0.207 7.207 14 F -0.210 7.210 15 C -0.138 4.138 16 H 0.119 0.881 17 C 0.135 3.865 18 N -0.709 5.709 19 C 0.546 3.454 20 O -0.578 6.578 21 C -0.170 4.170 22 C -0.099 4.099 23 C 0.059 3.941 24 F -0.230 7.230 25 C -0.139 4.139 26 C -0.141 4.141 27 C 0.156 3.844 28 H 0.251 0.749 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.133 0.867 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.014 0.986 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.474 -12.224 1.367 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.393 4.393 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.052 3.948 11 C -0.208 4.208 12 C 0.262 3.738 13 F -0.188 7.188 14 F -0.191 7.191 15 C -0.159 4.159 16 H 0.138 0.862 17 C 0.010 3.990 18 N -0.361 5.361 19 C 0.333 3.667 20 O -0.458 6.458 21 C -0.173 4.173 22 C -0.137 4.137 23 C 0.004 3.996 24 F -0.211 7.211 25 C -0.176 4.176 26 C -0.179 4.179 27 C 0.030 3.970 28 H 0.060 0.940 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.253 0.747 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.151 0.849 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.148 0.852 44 H 0.032 0.968 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.919 -12.828 1.306 18.253 hybrid contribution -0.456 1.168 -0.186 1.268 sum 12.464 -11.660 1.120 17.104 Atomic orbital electron populations 1.70191 1.06867 1.26052 1.54837 1.25811 0.95859 1.01617 1.00760 0.85240 0.79015 0.79858 0.76485 1.18434 1.21987 1.22436 1.19579 0.93567 0.85311 1.40855 0.90154 1.44323 1.37161 1.02237 1.49004 1.20533 0.88697 0.97662 0.87878 1.23101 1.04813 0.92122 1.00797 1.21076 0.84672 0.87305 0.80751 1.92971 1.94762 1.71467 1.59601 1.92953 1.57753 1.91021 1.77416 1.22769 0.97187 0.96727 0.99221 0.86249 1.21091 0.86874 0.95391 0.95625 1.45835 1.24770 1.12315 1.53185 1.20081 0.86709 0.82492 0.77428 1.90693 1.61109 1.33287 1.60673 1.21250 0.92178 1.12155 0.91706 1.21610 0.96506 0.98785 0.96789 1.22047 0.87077 1.00346 0.90121 1.92745 1.60945 1.95728 1.71723 1.23248 1.05168 0.96826 0.92394 1.23142 1.04681 0.93345 0.96700 1.20954 0.98880 0.85035 0.92174 0.93993 0.97818 0.90953 0.89009 0.88141 0.91137 0.92323 0.74724 0.87087 0.89551 0.92405 0.88927 0.84876 0.88860 0.89404 0.85183 0.96785 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.11 11.28 21.65 0.24 -51.86 16 2 C -0.04 -2.29 4.88 84.86 0.41 -1.87 16 3 Si 0.97 41.40 29.59 68.60 2.03 43.43 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.30 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.26 -12.92 9.57 84.04 0.80 -12.12 16 8 H 0.08 3.70 7.89 -2.91 -0.02 3.68 16 9 N -0.60 -27.26 2.99 -699.10 -2.09 -29.35 16 10 C 0.18 8.00 5.11 86.36 0.44 8.44 16 11 C -0.17 -5.90 5.62 30.67 0.17 -5.73 16 12 C 0.30 10.06 1.63 30.62 0.05 10.11 16 13 F -0.21 -6.68 16.41 44.97 0.74 -5.94 16 14 F -0.21 -7.96 15.72 44.97 0.71 -7.25 16 15 C -0.14 -4.18 2.03 -10.72 -0.02 -4.20 16 16 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 17 C 0.14 3.83 4.84 86.38 0.42 4.25 16 18 N -0.71 -16.69 5.33 -463.06 -2.47 -19.15 16 19 C 0.55 13.48 6.36 87.66 0.56 14.04 16 20 O -0.58 -19.07 16.70 -3.03 -0.05 -19.12 16 21 C -0.17 -2.79 1.91 -52.92 -0.10 -2.89 16 22 C -0.10 -1.32 5.55 30.60 0.17 -1.15 16 23 C 0.06 0.98 7.46 71.98 0.54 1.51 16 24 F -0.23 -4.80 17.36 44.97 0.78 -4.02 16 25 C -0.14 -1.80 9.93 30.62 0.30 -1.50 16 26 C -0.14 -1.99 9.78 30.62 0.30 -1.69 16 27 C 0.16 5.68 5.40 86.36 0.47 6.15 16 28 H 0.25 13.64 8.31 -92.71 -0.77 12.86 16 29 H 0.00 0.18 7.92 -2.39 -0.02 0.16 16 30 H 0.07 3.63 6.11 -2.39 -0.01 3.62 16 31 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.07 2.05 7.63 -2.39 -0.02 2.03 16 34 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 35 H 0.42 8.07 7.70 -92.71 -0.71 7.36 16 36 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.14 7.57 -2.39 -0.02 1.12 16 39 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.13 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 1.59 7.99 -2.39 -0.02 1.57 16 43 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.01 0.57 7.92 -2.38 -0.02 0.55 16 45 H 0.08 2.71 7.13 -2.38 -0.02 2.70 16 Total: -1.00 -64.74 374.15 4.70 -60.04 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.29 Total: 19.88 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 4.51 Total: 13.34 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.31 Total: -100.37 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 9 Polarization: -19.44 SS G_CDS: 2.23 Total: -17.22 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -64.74 4.70 -60.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733479346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.153 kcal (2) G-P(sol) polarization free energy of solvation -64.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds