Wall clock time and date at job start Tue Mar 31 2020 21:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48503 * 109.46895 * 239.99917 * 3 2 1 5 5 H 1.48495 * 109.47546 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46793 * 120.00362 * 3 2 1 7 7 C 1.38816 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99666 * 180.02562 * 9 7 2 11 11 C 1.53011 * 109.46813 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.46497 * 119.99625 * 269.99707 * 12 11 10 14 14 C 1.52999 * 109.47404 * 269.99879 * 13 12 11 15 15 O 1.42896 * 109.46796 * 65.00188 * 14 13 12 16 16 C 1.34774 * 120.00314 * 89.99642 * 12 11 10 17 17 O 1.21281 * 119.99668 * 0.02562 * 16 12 11 18 18 C 1.50698 * 120.00357 * 179.97438 * 16 12 11 19 19 C 1.50694 * 109.47184 * 180.02562 * 18 16 12 20 20 C 1.38291 * 120.11946 * 90.00193 * 19 18 16 21 21 C 1.37929 * 120.35446 * 180.17130 * 20 19 18 22 22 C 1.39289 * 120.24278 * 0.06555 * 21 20 19 23 23 C 1.38981 * 118.85498 * 359.58943 * 22 21 20 24 24 C 1.37660 * 120.77699 * 0.54611 * 23 22 21 25 25 C 1.51649 * 106.97907 * 180.57567 * 23 22 21 26 26 C 1.54713 * 101.93881 * 15.71381 * 25 23 22 27 27 O 1.36126 * 129.87617 * 179.56466 * 22 21 20 28 28 H 0.97003 * 120.00070 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00195 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47526 * 60.00224 * 10 9 7 31 31 H 1.08998 * 109.46867 * 299.99690 * 10 9 7 32 32 H 1.08996 * 109.47043 * 59.99742 * 11 10 9 33 33 H 1.09003 * 109.46561 * 299.99630 * 11 10 9 34 34 H 1.09001 * 109.47786 * 30.00527 * 13 12 11 35 35 H 1.09005 * 109.47048 * 150.00197 * 13 12 11 36 36 H 1.08999 * 109.47462 * 185.00160 * 14 13 12 37 37 H 1.09004 * 109.47019 * 305.00653 * 14 13 12 38 38 H 0.96701 * 114.00208 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46689 * 59.99897 * 18 16 12 40 40 H 1.09006 * 109.46910 * 300.00525 * 18 16 12 41 41 H 1.08007 * 119.81963 * 0.19443 * 20 19 18 42 42 H 1.07996 * 119.87833 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.98294 * 179.61345 * 24 23 22 44 44 H 1.09002 * 110.94508 * 257.54041 * 25 23 22 45 45 H 1.08997 * 110.93949 * 133.88365 * 25 23 22 46 46 H 1.09003 * 110.74698 * 92.94680 * 26 25 23 47 47 H 1.09001 * 110.74689 * 216.11069 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0884 -0.0018 13 6 2.1625 -6.7221 -1.2709 14 6 1.0408 -7.6640 -1.7131 15 8 -0.1357 -6.9038 -1.9958 16 6 2.1333 -6.6726 1.1651 17 8 1.8297 -6.1482 2.2156 18 6 2.8863 -7.9780 1.1644 19 6 3.1370 -8.4140 2.5850 20 6 2.2164 -9.2125 3.2386 21 6 2.4393 -9.6114 4.5400 22 6 3.5943 -9.2118 5.2082 23 6 4.5153 -8.4155 4.5381 24 6 4.2889 -8.0165 3.2401 25 6 5.6591 -8.1565 5.4995 26 6 5.4175 -9.2349 6.5822 27 8 4.0046 -9.4795 6.4782 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 2.6847 -3.7146 0.8894 31 1 2.6847 -3.7145 -0.8905 32 1 0.4374 -4.7617 -0.8913 33 1 0.4368 -4.7621 0.8887 34 1 2.3130 -5.9547 -2.0302 35 1 3.0837 -7.2901 -1.1408 36 1 1.3501 -8.2017 -2.6093 37 1 0.8299 -8.3771 -0.9161 38 1 -0.8894 -7.4376 -2.2822 39 1 3.8386 -7.8478 0.6504 40 1 2.2968 -8.7372 0.6503 41 1 1.3181 -9.5257 2.7271 42 1 1.7153 -10.2353 5.0429 43 1 5.0104 -7.3925 2.7337 44 1 5.5915 -7.1552 5.9249 45 1 6.6212 -8.3053 5.0093 46 1 5.9834 -10.1395 6.3594 47 1 5.6746 -8.8540 7.5707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733621661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:34 Heat of formation + Delta-G solvation = -71.937080 kcal Electronic energy + Delta-G solvation = -28446.045671 eV Core-core repulsion = 24401.898422 eV Total energy + Delta-G solvation = -4044.147249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26442 -39.96145 -37.83832 -37.07858 -35.49079 -34.26848 -32.91206 -32.41086 -31.30176 -29.49142 -29.42186 -28.17108 -26.59877 -23.81887 -23.45602 -23.14680 -22.15960 -21.68402 -20.96780 -18.87828 -17.84742 -17.56913 -17.12991 -16.96201 -16.72485 -16.39083 -16.06485 -15.65700 -14.67177 -14.62157 -14.45257 -14.27103 -13.93643 -13.65357 -13.57789 -13.38777 -13.21116 -13.15605 -13.09559 -12.74086 -12.57692 -12.39466 -12.18943 -12.01925 -11.78553 -11.54384 -11.13277 -11.02054 -10.89456 -10.86053 -10.82741 -10.54320 -10.19282 -10.08589 -9.71626 -9.55922 -9.00015 -8.79226 -8.41828 -8.17032 -6.84690 -5.68563 -2.97311 1.14253 1.23465 2.79701 3.05272 3.10109 3.49342 3.52951 3.54580 3.58387 4.07200 4.18095 4.31605 4.54845 4.63353 4.67295 4.68516 4.74980 4.83281 4.95562 4.98910 5.07954 5.13569 5.16839 5.25900 5.28956 5.33686 5.45199 5.50757 5.53889 5.61779 5.63742 5.85679 5.91677 6.01488 6.09054 6.16172 6.23945 6.31747 6.40246 6.45452 6.66141 6.85364 7.02421 7.03862 7.46551 7.63529 7.76064 8.38718 8.50263 9.60608 10.18528 10.53718 11.54421 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.002777 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.665778 B =10081.858878 C =12169.822016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.113 3.887 12 N -0.601 5.601 13 C 0.105 3.895 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.507 3.493 17 O -0.522 6.522 18 C -0.096 4.096 19 C -0.090 4.090 20 C -0.070 4.070 21 C -0.136 4.136 22 C 0.102 3.898 23 C -0.173 4.173 24 C -0.053 4.053 25 C -0.111 4.111 26 C 0.052 3.948 27 O -0.307 6.307 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.377 0.623 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -27.449 2.418 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.009 4.009 12 N -0.334 5.334 13 C -0.019 4.019 14 C -0.022 4.022 15 O -0.366 6.366 16 C 0.294 3.706 17 O -0.397 6.397 18 C -0.136 4.136 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.155 4.155 22 C 0.057 3.943 23 C -0.174 4.174 24 C -0.071 4.071 25 C -0.148 4.148 26 C -0.023 4.023 27 O -0.221 6.221 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.223 0.777 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.187 -26.610 3.364 28.351 hybrid contribution -0.009 0.564 -0.309 0.643 sum 9.178 -26.046 3.055 27.784 Atomic orbital electron populations 1.69658 1.05084 1.25701 1.57802 1.24745 0.95549 0.97648 1.03128 0.86244 0.78489 0.83520 0.77800 1.21310 1.21663 1.21290 1.19162 0.90932 0.84071 1.42621 0.91342 1.42201 1.05889 0.99784 1.89536 1.20908 0.93988 0.85911 0.97702 1.21690 0.94518 0.81118 1.03622 1.47823 1.57131 1.23474 1.04956 1.21703 0.95772 0.97420 0.86960 1.22706 0.87033 0.93745 0.98675 1.86608 1.22380 1.37531 1.90124 1.20508 0.80088 0.86228 0.83740 1.90768 1.53501 1.64673 1.30711 1.20674 1.01940 0.95973 0.95046 1.19118 0.94969 0.99631 0.95376 1.20661 0.98036 0.96592 0.93470 1.20160 0.96926 1.04085 0.94333 1.19572 0.95569 0.95086 0.84095 1.20667 0.98555 1.02318 0.95867 1.20083 0.96959 0.97469 0.92564 1.21796 0.97765 1.00498 0.94705 1.23810 0.79708 0.98142 1.00622 1.86809 1.24647 1.84879 1.25771 0.93483 0.78233 0.96260 0.96701 0.89568 0.90194 0.88954 0.89060 0.92800 0.93723 0.77660 0.88090 0.88301 0.85362 0.85487 0.85855 0.88994 0.89095 0.90661 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.06 55.49 0.72 -28.69 16 2 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.97 5.60 -59.90 -0.34 -20.30 16 10 C 0.14 3.21 6.58 -4.04 -0.03 3.18 16 11 C 0.11 2.10 5.34 -4.04 -0.02 2.08 16 12 N -0.60 -8.62 2.44 -173.68 -0.42 -9.04 16 13 C 0.11 1.04 5.62 -4.04 -0.02 1.02 16 14 C 0.06 0.46 7.38 37.16 0.27 0.74 16 15 O -0.56 -5.95 12.48 -35.23 -0.44 -6.39 16 16 C 0.51 7.55 7.67 -10.99 -0.08 7.47 16 17 O -0.52 -10.44 15.61 5.56 0.09 -10.35 16 18 C -0.10 -0.95 4.39 -29.04 -0.13 -1.08 16 19 C -0.09 -1.05 4.38 -104.56 -0.46 -1.51 16 20 C -0.07 -0.78 9.68 -39.68 -0.38 -1.16 16 21 C -0.14 -1.59 10.06 -39.30 -0.40 -1.98 16 22 C 0.10 1.27 7.04 -38.92 -0.27 1.00 16 23 C -0.17 -2.04 6.27 -104.09 -0.65 -2.70 16 24 C -0.05 -0.62 9.69 -39.75 -0.39 -1.01 16 25 C -0.11 -0.96 7.11 -26.51 -0.19 -1.15 16 26 C 0.05 0.41 8.01 38.06 0.30 0.72 16 27 O -0.31 -3.65 11.10 -20.14 -0.22 -3.87 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.38 10.96 7.67 -40.82 -0.31 10.65 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 1.60 7.11 -51.93 -0.37 1.23 16 33 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 34 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.09 0.60 6.44 -51.93 -0.33 0.26 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.04 0.32 7.30 -51.93 -0.38 -0.06 16 38 H 0.38 2.30 9.12 45.56 0.42 2.72 16 39 H 0.10 0.75 7.35 -51.93 -0.38 0.37 16 40 H 0.10 0.69 7.21 -51.93 -0.37 0.32 16 41 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -39.12 390.89 -8.75 -47.87 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.31 Total: 8.75 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.69 Total: -2.10 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.03 Total: -58.04 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.58 Total: -20.61 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.12 -8.75 -47.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733621661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.072 kcal (2) G-P(sol) polarization free energy of solvation -39.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds