Wall clock time and date at job start Tue Mar 31 2020 21:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48503 * 109.46895 * 239.99917 * 3 2 1 5 5 H 1.48495 * 109.47546 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46793 * 120.00362 * 3 2 1 7 7 C 1.38816 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99666 * 180.02562 * 9 7 2 11 11 C 1.53011 * 109.46813 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.46497 * 119.99625 * 269.99707 * 12 11 10 14 14 C 1.52999 * 109.47404 * 269.99879 * 13 12 11 15 15 O 1.42896 * 109.46796 * 65.00188 * 14 13 12 16 16 C 1.34774 * 120.00314 * 89.99642 * 12 11 10 17 17 O 1.21281 * 119.99668 * 0.02562 * 16 12 11 18 18 C 1.50698 * 120.00357 * 179.97438 * 16 12 11 19 19 C 1.50694 * 109.47184 * 180.02562 * 18 16 12 20 20 C 1.38291 * 120.11946 * 90.00193 * 19 18 16 21 21 C 1.37929 * 120.35446 * 180.17130 * 20 19 18 22 22 C 1.39289 * 120.24278 * 0.06555 * 21 20 19 23 23 C 1.38981 * 118.85498 * 359.58943 * 22 21 20 24 24 C 1.37660 * 120.77699 * 0.54611 * 23 22 21 25 25 C 1.51649 * 106.97907 * 180.57567 * 23 22 21 26 26 C 1.54713 * 101.93881 * 15.71381 * 25 23 22 27 27 O 1.36126 * 129.87617 * 179.56466 * 22 21 20 28 28 H 0.97003 * 120.00070 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00195 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47526 * 60.00224 * 10 9 7 31 31 H 1.08998 * 109.46867 * 299.99690 * 10 9 7 32 32 H 1.08996 * 109.47043 * 59.99742 * 11 10 9 33 33 H 1.09003 * 109.46561 * 299.99630 * 11 10 9 34 34 H 1.09001 * 109.47786 * 30.00527 * 13 12 11 35 35 H 1.09005 * 109.47048 * 150.00197 * 13 12 11 36 36 H 1.08999 * 109.47462 * 185.00160 * 14 13 12 37 37 H 1.09004 * 109.47019 * 305.00653 * 14 13 12 38 38 H 0.96701 * 114.00208 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46689 * 59.99897 * 18 16 12 40 40 H 1.09006 * 109.46910 * 300.00525 * 18 16 12 41 41 H 1.08007 * 119.81963 * 0.19443 * 20 19 18 42 42 H 1.07996 * 119.87833 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.98294 * 179.61345 * 24 23 22 44 44 H 1.09002 * 110.94508 * 257.54041 * 25 23 22 45 45 H 1.08997 * 110.93949 * 133.88365 * 25 23 22 46 46 H 1.09003 * 110.74698 * 92.94680 * 26 25 23 47 47 H 1.09001 * 110.74689 * 216.11069 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0884 -0.0018 13 6 2.1625 -6.7221 -1.2709 14 6 1.0408 -7.6640 -1.7131 15 8 -0.1357 -6.9038 -1.9958 16 6 2.1333 -6.6726 1.1651 17 8 1.8297 -6.1482 2.2156 18 6 2.8863 -7.9780 1.1644 19 6 3.1370 -8.4140 2.5850 20 6 2.2164 -9.2125 3.2386 21 6 2.4393 -9.6114 4.5400 22 6 3.5943 -9.2118 5.2082 23 6 4.5153 -8.4155 4.5381 24 6 4.2889 -8.0165 3.2401 25 6 5.6591 -8.1565 5.4995 26 6 5.4175 -9.2349 6.5822 27 8 4.0046 -9.4795 6.4782 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 2.6847 -3.7146 0.8894 31 1 2.6847 -3.7145 -0.8905 32 1 0.4374 -4.7617 -0.8913 33 1 0.4368 -4.7621 0.8887 34 1 2.3130 -5.9547 -2.0302 35 1 3.0837 -7.2901 -1.1408 36 1 1.3501 -8.2017 -2.6093 37 1 0.8299 -8.3771 -0.9161 38 1 -0.8894 -7.4376 -2.2822 39 1 3.8386 -7.8478 0.6504 40 1 2.2968 -8.7372 0.6503 41 1 1.3181 -9.5257 2.7271 42 1 1.7153 -10.2353 5.0429 43 1 5.0104 -7.3925 2.7337 44 1 5.5915 -7.1552 5.9249 45 1 6.6212 -8.3053 5.0093 46 1 5.9834 -10.1395 6.3594 47 1 5.6746 -8.8540 7.5707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733621661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:33 Heat of formation + Delta-G solvation = -101.447655 kcal Electronic energy + Delta-G solvation = -28447.325346 eV Core-core repulsion = 24401.898422 eV Total energy + Delta-G solvation = -4045.426924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06025 -41.07556 -38.69061 -37.94612 -37.04217 -35.84302 -33.80166 -33.59439 -32.90921 -30.74171 -30.18689 -29.30592 -27.90805 -25.57169 -24.37907 -23.93658 -23.39015 -22.87749 -22.04078 -20.04207 -19.17808 -18.61682 -18.35089 -17.82635 -17.67909 -17.37068 -17.02608 -16.76616 -16.40222 -15.75838 -15.42147 -15.32848 -15.19609 -15.07194 -15.00916 -14.64998 -14.36545 -14.14513 -13.98086 -13.84867 -13.38912 -13.31663 -13.15768 -12.99015 -12.88595 -12.70736 -12.61620 -12.56426 -12.41766 -12.17666 -12.10087 -11.88553 -11.75978 -11.67665 -10.98544 -10.90252 -10.74017 -9.83942 -9.65153 -9.08256 -9.01256 -7.98424 -5.29890 0.28982 0.37670 1.44136 1.49238 1.55295 1.68305 1.98970 2.33476 2.54679 2.71735 3.34062 3.45723 3.49329 3.61522 3.67438 3.84012 3.95087 4.08290 4.13833 4.15524 4.19055 4.26560 4.32879 4.35526 4.40676 4.46454 4.54925 4.60548 4.63978 4.64470 4.66892 4.74614 4.85254 4.86661 4.96341 5.07875 5.10034 5.13582 5.26156 5.40023 5.40965 5.57565 5.58279 5.65701 6.21504 6.22482 6.49774 7.02649 7.25347 7.28007 8.00205 8.25801 9.25029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010181 B = 0.002777 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.665778 B =10081.858878 C =12169.822016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.133 3.867 12 N -0.598 5.598 13 C 0.094 3.906 14 C 0.057 3.943 15 O -0.597 6.597 16 C 0.503 3.497 17 O -0.584 6.584 18 C -0.083 4.083 19 C -0.103 4.103 20 C -0.077 4.077 21 C -0.152 4.152 22 C 0.080 3.920 23 C -0.189 4.189 24 C -0.069 4.069 25 C -0.110 4.110 26 C 0.048 3.952 27 O -0.328 6.328 28 H 0.254 0.746 29 H 0.374 0.626 30 H -0.001 1.001 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -29.041 1.156 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.009 3.991 12 N -0.330 5.330 13 C -0.028 4.028 14 C -0.022 4.022 15 O -0.405 6.405 16 C 0.293 3.707 17 O -0.463 6.463 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.095 4.095 21 C -0.170 4.170 22 C 0.035 3.965 23 C -0.190 4.190 24 C -0.087 4.087 25 C -0.147 4.147 26 C -0.026 4.026 27 O -0.243 6.243 28 H 0.062 0.938 29 H 0.206 0.794 30 H 0.017 0.983 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.105 0.895 45 H 0.132 0.868 46 H 0.112 0.888 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.127 -28.270 2.058 30.450 hybrid contribution -0.588 0.996 0.096 1.160 sum 10.539 -27.274 2.154 29.319 Atomic orbital electron populations 1.69830 1.06741 1.26431 1.58941 1.25681 0.96536 1.01391 1.03128 0.85115 0.77202 0.78530 0.78311 1.19761 1.21687 1.20568 1.19575 0.91420 0.85227 1.42225 0.90832 1.42413 1.05629 1.01095 1.89550 1.20951 0.94349 0.85465 0.96902 1.21156 0.93535 0.82368 1.02030 1.47894 1.56253 1.21841 1.06997 1.22162 0.98516 0.97786 0.84291 1.22820 0.85607 0.93121 1.00625 1.86553 1.23955 1.39540 1.90463 1.21455 0.79249 0.87376 0.82656 1.90747 1.56009 1.66638 1.32942 1.20735 1.03189 0.93493 0.94813 1.19402 0.94918 0.99576 0.96428 1.20970 0.98633 0.96430 0.93433 1.20466 0.97178 1.04479 0.94907 1.19881 0.96224 0.95826 0.84545 1.21073 0.99531 1.02118 0.96305 1.20368 0.97654 0.97763 0.92941 1.21885 0.97897 1.00495 0.94410 1.24105 0.78057 0.98885 1.01551 1.86767 1.26832 1.85074 1.25656 0.93752 0.79448 0.98348 0.95392 0.89446 0.93345 0.90143 0.84832 0.89363 0.92372 0.75719 0.84870 0.84503 0.83394 0.84428 0.84948 0.89498 0.86817 0.88771 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.17 13.06 21.65 0.28 -61.89 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.98 47.99 29.55 68.60 2.03 50.01 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.25 -15.20 9.99 84.03 0.84 -14.36 16 8 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.74 -41.85 5.60 -343.44 -1.92 -43.77 16 10 C 0.15 6.90 6.58 86.38 0.57 7.47 16 11 C 0.13 5.09 5.34 86.38 0.46 5.55 16 12 N -0.60 -16.51 2.44 -821.80 -2.00 -18.51 16 13 C 0.09 1.58 5.62 86.38 0.49 2.06 16 14 C 0.06 0.71 7.38 71.98 0.53 1.24 16 15 O -0.60 -11.62 12.48 -148.98 -1.86 -13.48 16 16 C 0.50 14.46 7.67 87.66 0.67 15.13 16 17 O -0.58 -23.98 15.61 -3.03 -0.05 -24.03 16 18 C -0.08 -1.38 4.39 29.10 0.13 -1.25 16 19 C -0.10 -2.23 4.38 -19.83 -0.09 -2.32 16 20 C -0.08 -1.64 9.68 22.21 0.21 -1.43 16 21 C -0.15 -3.53 10.06 22.45 0.23 -3.30 16 22 C 0.08 2.01 7.04 22.70 0.16 2.17 16 23 C -0.19 -4.41 6.27 -19.52 -0.12 -4.53 16 24 C -0.07 -1.59 9.69 22.16 0.21 -1.37 16 25 C -0.11 -1.81 7.11 30.74 0.22 -1.59 16 26 C 0.05 0.70 8.01 72.57 0.58 1.28 16 27 O -0.33 -7.78 11.10 -94.99 -1.05 -8.83 16 28 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.37 22.20 7.67 -92.71 -0.71 21.48 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.09 3.31 7.11 -2.39 -0.02 3.29 16 33 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 34 H 0.08 1.58 8.07 -2.39 -0.02 1.56 16 35 H 0.13 1.09 6.44 -2.38 -0.02 1.07 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.59 7.30 -2.38 -0.02 0.57 16 38 H 0.39 4.16 9.12 -74.06 -0.68 3.49 16 39 H 0.13 1.38 7.35 -2.39 -0.02 1.36 16 40 H 0.14 1.25 7.21 -2.38 -0.02 1.23 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -88.79 390.89 0.60 -88.19 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.39 Total: 31.63 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.56 Total: 0.68 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -3.64 Total: -124.17 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.96 Total: -46.34 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -88.79 0.60 -88.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733621661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.255 kcal (2) G-P(sol) polarization free energy of solvation -88.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds