Wall clock time and date at job start Tue Mar 31 2020 19:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 C 1.52993 * 109.47081 * 239.99452 * 2 1 3 5 5 N 1.46498 * 109.47320 * 184.99878 * 4 2 1 6 6 C 1.36937 * 120.00408 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99764 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00015 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99992 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47192 * 90.00064 * 10 8 6 12 12 H 1.48500 * 109.47317 * 210.00172 * 10 8 6 13 13 H 1.48502 * 109.46976 * 330.00069 * 10 8 6 14 14 N 1.46507 * 109.47122 * 119.99407 * 2 1 3 15 15 C 1.46502 * 119.99731 * 60.00060 * 14 2 1 16 16 C 1.34766 * 120.00009 * 240.00317 * 14 2 1 17 17 O 1.21283 * 120.00141 * 359.97438 * 16 14 2 18 18 C 1.50710 * 120.00085 * 180.02562 * 16 14 2 19 19 C 1.50691 * 109.47048 * 179.97438 * 18 16 14 20 20 C 1.35132 * 125.69406 * 125.00015 * 19 18 16 21 21 N 1.36812 * 107.18488 * 179.97438 * 20 19 18 22 22 C 1.36607 * 132.54072 * 179.97438 * 21 20 19 23 23 C 1.35133 * 120.57116 * 180.30027 * 22 21 20 24 24 F 1.35096 * 119.87528 * 179.71920 * 23 22 21 25 25 C 1.40614 * 120.24619 * 359.42231 * 23 22 21 26 26 C 1.36014 * 119.68995 * 0.60406 * 25 23 22 27 27 C 1.37032 * 107.01408 * 359.97438 * 21 20 19 28 28 N 1.32604 * 108.03452 * 0.02562 * 27 21 20 29 29 H 1.08999 * 109.46885 * 60.00345 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47195 * 300.00325 * 1 2 3 32 32 H 1.08997 * 109.47163 * 305.00150 * 4 2 1 33 33 H 1.09006 * 109.47273 * 64.99954 * 4 2 1 34 34 H 0.97007 * 119.99655 * 0.02562 * 5 4 2 35 35 H 0.97005 * 120.00010 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46782 * 270.00096 * 15 14 2 37 37 H 1.09005 * 109.46986 * 29.99748 * 15 14 2 38 38 H 1.08994 * 109.47202 * 150.00170 * 15 14 2 39 39 H 1.08996 * 109.46602 * 59.99491 * 18 16 14 40 40 H 1.08998 * 109.46316 * 299.99647 * 18 16 14 41 41 H 1.08003 * 126.40334 * 359.95431 * 20 19 18 42 42 H 1.08002 * 119.71111 * 0.02562 * 22 21 20 43 43 H 1.08004 * 120.15501 * 180.26628 * 25 23 22 44 44 H 1.07999 * 120.31126 * 179.71081 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1839 -1.4381 -2.2071 7 1 3.6469 -1.8433 -3.0518 8 6 5.5673 -1.5381 -2.1512 9 7 6.2216 -1.0456 -1.1209 10 14 6.5002 -2.3718 -3.5383 11 1 6.8630 -1.3639 -4.5667 12 1 7.7353 -2.9957 -2.9993 13 1 5.6439 -3.4187 -4.1516 14 7 2.0184 -0.6905 1.1963 15 6 1.6644 -2.0931 1.4282 16 6 2.7931 -0.0355 2.0834 17 8 3.0865 1.1256 1.8911 18 6 3.2960 -0.7459 3.3137 19 6 4.1335 0.2012 4.1336 20 6 3.9370 0.5017 5.4364 21 7 4.9096 1.3939 5.7966 22 6 5.1914 2.0278 6.9734 23 6 6.2318 2.8857 7.0600 24 9 6.4944 3.5093 8.2293 25 6 7.0460 3.1270 5.9392 26 6 6.7744 2.5019 4.7621 27 6 5.6825 1.6142 4.6868 28 7 5.1940 0.8828 3.6944 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6054 -1.7198 -1.2950 33 1 1.7516 -0.1585 -2.1370 34 1 3.9824 -0.4628 -0.4315 35 1 7.1883 -1.1158 -1.0817 36 1 0.7376 -2.1442 1.9995 37 1 1.5295 -2.5968 0.4710 38 1 2.4628 -2.5817 1.9866 39 1 3.9017 -1.6021 3.0167 40 1 2.4484 -1.0888 3.9070 41 1 3.1576 0.1108 6.0738 42 1 4.5745 1.8450 7.8409 43 1 7.8798 3.8096 6.0112 44 1 7.3904 2.6834 3.8938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753704921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:57 Heat of formation + Delta-G solvation = 37.792803 kcal Electronic energy + Delta-G solvation = -28512.226929 eV Core-core repulsion = 24381.670371 eV Total energy + Delta-G solvation = -4130.556558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 27.16 seconds Orbital eigenvalues (eV) -49.32682 -42.86210 -39.55209 -37.36807 -36.12445 -33.88554 -33.81760 -32.35126 -31.14937 -29.94936 -29.15408 -27.68245 -26.49314 -25.51976 -23.86866 -22.85645 -22.60261 -21.62412 -20.20192 -18.68876 -18.33414 -17.76371 -16.96669 -16.87327 -16.49510 -16.37156 -15.63385 -15.39309 -15.21461 -15.10260 -14.67827 -14.49238 -14.01077 -13.70312 -13.46551 -13.34572 -13.22091 -12.94329 -12.71699 -12.28030 -12.17517 -12.03540 -11.87793 -11.84981 -11.71992 -11.42407 -11.21112 -11.17351 -10.78334 -10.67192 -10.37377 -9.96374 -9.90696 -9.59675 -9.26798 -8.77433 -8.63246 -8.11562 -7.99846 -6.78820 -5.61368 -2.91724 0.43834 1.01600 2.32538 2.66669 3.17714 3.33233 3.49843 3.54242 3.56471 3.58577 3.77965 4.02428 4.18200 4.50991 4.65789 4.67870 4.95223 4.95875 5.17472 5.29555 5.38475 5.44697 5.47085 5.50663 5.61005 5.64465 5.67248 5.70414 5.73451 5.76986 5.87595 6.01085 6.14477 6.19552 6.25383 6.28308 6.47180 6.53365 6.60526 6.82750 6.91102 7.12261 7.79143 7.88155 7.95401 8.54749 8.74703 9.66160 10.26166 10.61757 11.59628 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.003136 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.766306 B = 8927.635043 C =10634.034864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.098 0.902 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.243 4.243 7 H 0.067 0.933 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.903 3.097 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.601 5.601 15 C 0.082 3.918 16 C 0.522 3.478 17 O -0.521 6.521 18 C -0.060 4.060 19 C 0.088 3.912 20 C -0.086 4.086 21 N -0.353 5.353 22 C 0.015 3.985 23 C 0.081 3.919 24 F -0.125 7.125 25 C -0.148 4.148 26 C -0.028 4.028 27 C 0.204 3.796 28 N -0.429 5.429 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.388 0.612 35 H 0.254 0.746 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 3.023 19.299 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.085 0.915 8 C -0.208 4.208 9 N -0.570 5.570 10 Si 0.734 3.266 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.209 1.209 14 N -0.335 5.335 15 C -0.062 4.062 16 C 0.309 3.691 17 O -0.395 6.395 18 C -0.101 4.101 19 C -0.047 4.047 20 C -0.218 4.218 21 N -0.026 5.026 22 C -0.108 4.108 23 C 0.058 3.942 24 F -0.104 7.104 25 C -0.172 4.172 26 C -0.048 4.048 27 C -0.039 4.039 28 N -0.147 5.147 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.171 0.829 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.988 3.519 18.311 19.913 hybrid contribution 0.425 -0.370 0.515 0.763 sum -6.564 3.150 18.826 20.185 Atomic orbital electron populations 1.22044 0.95395 1.01904 1.01843 1.21333 0.92998 0.98548 0.84742 0.88349 1.20985 0.87247 0.96605 0.93646 1.42316 0.99619 1.70106 1.25162 1.19173 0.89424 1.29665 0.99164 0.91459 1.24754 0.96470 1.01706 0.97893 1.69710 1.07066 1.50428 1.29794 0.86258 0.79594 0.78986 0.81720 1.21841 1.21877 1.20931 1.47633 1.51182 1.12099 1.22562 1.21695 0.99597 0.82210 1.02682 1.20113 0.77935 0.87076 0.83981 1.90724 1.55719 1.16996 1.76090 1.20053 0.98594 0.97285 0.94142 1.20199 0.95164 0.98677 0.90655 1.22319 0.98815 1.02155 0.98482 1.42485 1.22047 1.29076 1.08969 1.21092 1.00670 0.98789 0.90263 1.16586 0.97261 0.97164 0.83183 1.91538 1.93414 1.80477 1.44977 1.21017 1.01661 1.03306 0.91213 1.20274 0.93538 0.92235 0.98771 1.21115 0.97046 1.03010 0.82743 1.70875 1.10172 1.08440 1.25243 0.91608 0.92476 0.92812 0.96334 0.95686 0.77709 0.93603 0.93462 0.90457 0.91311 0.86751 0.87767 0.79805 0.81286 0.82899 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.19 37.16 0.34 -1.67 16 2 C 0.13 2.25 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.02 6.90 -51.93 -0.36 1.67 16 4 C 0.14 2.98 5.50 -4.05 -0.02 2.96 16 5 N -0.73 -19.34 5.43 -59.91 -0.33 -19.67 16 6 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.92 -29.20 13.06 55.49 0.72 -28.48 16 10 Si 0.90 23.04 29.55 -169.99 -5.02 18.02 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.60 -10.04 2.24 -173.93 -0.39 -10.43 16 15 C 0.08 1.05 9.30 59.85 0.56 1.61 16 16 C 0.52 9.65 7.37 -10.99 -0.08 9.56 16 17 O -0.52 -11.91 14.89 5.55 0.08 -11.83 16 18 C -0.06 -0.86 4.81 -29.03 -0.14 -1.00 16 19 C 0.09 1.40 5.85 -82.98 -0.49 0.92 16 20 C -0.09 -1.07 11.63 -16.43 -0.19 -1.26 16 21 N -0.35 -4.56 2.95 -62.58 -0.18 -4.75 16 22 C 0.02 0.15 10.92 -16.53 -0.18 -0.03 16 23 C 0.08 0.79 7.25 -39.79 -0.29 0.50 16 24 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 25 C -0.15 -1.44 10.05 -39.48 -0.40 -1.84 16 26 C -0.03 -0.35 10.10 -39.36 -0.40 -0.75 16 27 C 0.20 3.21 7.81 -156.05 -1.22 1.99 16 28 N -0.43 -8.27 10.67 -9.01 -0.10 -8.37 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.37 6.88 -51.93 -0.36 0.02 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.39 11.30 7.06 -40.82 -0.29 11.01 16 35 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 39 H 0.11 1.65 7.40 -51.93 -0.38 1.26 16 40 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 41 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -38.52 373.33 -8.29 -46.81 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.81 Total: 8.77 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.94 Total: 5.44 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -0.27 Total: -71.70 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.52 -8.29 -46.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753704921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.604 kcal (2) G-P(sol) polarization free energy of solvation -38.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.16 seconds