Wall clock time and date at job start Tue Mar 31 2020 19:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 C 1.52993 * 109.47081 * 239.99452 * 2 1 3 5 5 N 1.46498 * 109.47320 * 184.99878 * 4 2 1 6 6 C 1.36937 * 120.00408 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99764 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00015 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99992 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47192 * 90.00064 * 10 8 6 12 12 H 1.48500 * 109.47317 * 210.00172 * 10 8 6 13 13 H 1.48502 * 109.46976 * 330.00069 * 10 8 6 14 14 N 1.46507 * 109.47122 * 119.99407 * 2 1 3 15 15 C 1.46502 * 119.99731 * 60.00060 * 14 2 1 16 16 C 1.34766 * 120.00009 * 240.00317 * 14 2 1 17 17 O 1.21283 * 120.00141 * 359.97438 * 16 14 2 18 18 C 1.50710 * 120.00085 * 180.02562 * 16 14 2 19 19 C 1.50691 * 109.47048 * 179.97438 * 18 16 14 20 20 C 1.35132 * 125.69406 * 125.00015 * 19 18 16 21 21 N 1.36812 * 107.18488 * 179.97438 * 20 19 18 22 22 C 1.36607 * 132.54072 * 179.97438 * 21 20 19 23 23 C 1.35133 * 120.57116 * 180.30027 * 22 21 20 24 24 F 1.35096 * 119.87528 * 179.71920 * 23 22 21 25 25 C 1.40614 * 120.24619 * 359.42231 * 23 22 21 26 26 C 1.36014 * 119.68995 * 0.60406 * 25 23 22 27 27 C 1.37032 * 107.01408 * 359.97438 * 21 20 19 28 28 N 1.32604 * 108.03452 * 0.02562 * 27 21 20 29 29 H 1.08999 * 109.46885 * 60.00345 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47195 * 300.00325 * 1 2 3 32 32 H 1.08997 * 109.47163 * 305.00150 * 4 2 1 33 33 H 1.09006 * 109.47273 * 64.99954 * 4 2 1 34 34 H 0.97007 * 119.99655 * 0.02562 * 5 4 2 35 35 H 0.97005 * 120.00010 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46782 * 270.00096 * 15 14 2 37 37 H 1.09005 * 109.46986 * 29.99748 * 15 14 2 38 38 H 1.08994 * 109.47202 * 150.00170 * 15 14 2 39 39 H 1.08996 * 109.46602 * 59.99491 * 18 16 14 40 40 H 1.08998 * 109.46316 * 299.99647 * 18 16 14 41 41 H 1.08003 * 126.40334 * 359.95431 * 20 19 18 42 42 H 1.08002 * 119.71111 * 0.02562 * 22 21 20 43 43 H 1.08004 * 120.15501 * 180.26628 * 25 23 22 44 44 H 1.07999 * 120.31126 * 179.71081 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1839 -1.4381 -2.2071 7 1 3.6469 -1.8433 -3.0518 8 6 5.5673 -1.5381 -2.1512 9 7 6.2216 -1.0456 -1.1209 10 14 6.5002 -2.3718 -3.5383 11 1 6.8630 -1.3639 -4.5667 12 1 7.7353 -2.9957 -2.9993 13 1 5.6439 -3.4187 -4.1516 14 7 2.0184 -0.6905 1.1963 15 6 1.6644 -2.0931 1.4282 16 6 2.7931 -0.0355 2.0834 17 8 3.0865 1.1256 1.8911 18 6 3.2960 -0.7459 3.3137 19 6 4.1335 0.2012 4.1336 20 6 3.9370 0.5017 5.4364 21 7 4.9096 1.3939 5.7966 22 6 5.1914 2.0278 6.9734 23 6 6.2318 2.8857 7.0600 24 9 6.4944 3.5093 8.2293 25 6 7.0460 3.1270 5.9392 26 6 6.7744 2.5019 4.7621 27 6 5.6825 1.6142 4.6868 28 7 5.1940 0.8828 3.6944 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6054 -1.7198 -1.2950 33 1 1.7516 -0.1585 -2.1370 34 1 3.9824 -0.4628 -0.4315 35 1 7.1883 -1.1158 -1.0817 36 1 0.7376 -2.1442 1.9995 37 1 1.5295 -2.5968 0.4710 38 1 2.4628 -2.5817 1.9866 39 1 3.9017 -1.6021 3.0167 40 1 2.4484 -1.0888 3.9070 41 1 3.1576 0.1108 6.0738 42 1 4.5745 1.8450 7.8409 43 1 7.8798 3.8096 6.0112 44 1 7.3904 2.6834 3.8938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753704921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:56 Heat of formation + Delta-G solvation = 12.041292 kcal Electronic energy + Delta-G solvation = -28513.343599 eV Core-core repulsion = 24381.670371 eV Total energy + Delta-G solvation = -4131.673227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.08522 -43.83763 -40.90944 -38.36988 -37.60064 -35.76573 -34.76905 -33.83539 -32.59331 -31.57680 -30.09891 -28.68600 -27.63637 -27.34747 -24.82061 -24.43378 -23.80192 -22.94754 -21.42003 -19.96893 -19.30398 -19.06119 -18.66314 -18.14114 -17.40277 -17.33291 -16.93448 -16.64381 -16.42006 -16.12817 -16.06493 -15.58176 -15.29553 -15.19955 -15.00070 -14.57126 -14.41393 -14.10026 -13.91171 -13.71421 -13.64639 -13.21956 -13.11865 -13.05823 -12.86098 -12.77527 -12.64023 -12.46496 -12.30738 -12.12478 -12.06263 -11.77119 -11.69813 -11.00626 -10.95323 -10.64585 -9.61605 -9.44229 -8.97282 -8.93270 -7.89226 -5.20804 -0.41180 0.11468 1.43938 1.44701 1.48116 1.56367 1.68399 1.82839 2.23340 2.45095 2.56915 2.92018 3.14663 3.35718 3.41765 3.69992 3.76074 3.84077 3.98792 4.04003 4.16071 4.30845 4.35282 4.39379 4.44324 4.51716 4.54686 4.67252 4.78456 4.81567 4.83473 4.85517 4.88410 4.93579 4.97930 5.09888 5.19819 5.34526 5.40044 5.48846 5.53775 5.78397 6.02039 6.28127 6.59341 6.94400 7.34264 7.40911 8.12533 8.35609 9.32646 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.003136 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.766306 B = 8927.635043 C =10634.034864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 H 0.058 0.942 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.078 4.078 9 N -0.965 5.965 10 Si 0.975 3.025 11 H -0.291 1.291 12 H -0.297 1.297 13 H -0.264 1.264 14 N -0.601 5.601 15 C 0.076 3.924 16 C 0.509 3.491 17 O -0.579 6.579 18 C -0.050 4.050 19 C 0.047 3.953 20 C -0.065 4.065 21 N -0.356 5.356 22 C 0.024 3.976 23 C 0.076 3.924 24 F -0.118 7.118 25 C -0.120 4.120 26 C -0.065 4.065 27 C 0.180 3.820 28 N -0.507 5.507 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.371 0.629 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.158 0.842 41 H 0.236 0.764 42 H 0.211 0.789 43 H 0.183 0.817 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 1.815 21.320 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 H 0.076 0.924 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.096 0.904 8 C -0.270 4.270 9 N -0.616 5.616 10 Si 0.804 3.196 11 H -0.218 1.218 12 H -0.223 1.223 13 H -0.188 1.188 14 N -0.334 5.334 15 C -0.066 4.066 16 C 0.298 3.702 17 O -0.458 6.458 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.196 4.196 21 N -0.028 5.028 22 C -0.099 4.099 23 C 0.054 3.946 24 F -0.097 7.097 25 C -0.144 4.144 26 C -0.085 4.085 27 C -0.063 4.063 28 N -0.226 5.226 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.203 0.797 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.176 0.824 41 H 0.252 0.748 42 H 0.228 0.772 43 H 0.200 0.800 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.150 2.259 20.313 22.393 hybrid contribution 1.037 0.079 -0.053 1.041 sum -8.113 2.339 20.260 21.949 Atomic orbital electron populations 1.21932 0.91192 1.03693 1.02869 1.21178 0.96009 0.96036 0.84084 0.92383 1.21212 0.84175 0.97864 0.95344 1.42550 1.02020 1.69807 1.24111 1.19638 0.89957 1.28552 0.99605 0.90397 1.25648 0.97599 1.03190 1.00568 1.69925 1.06739 1.52637 1.32255 0.85116 0.77951 0.78107 0.78406 1.21824 1.22328 1.18846 1.47794 1.50529 1.13493 1.21594 1.21967 1.01988 0.79692 1.02948 1.20941 0.77247 0.86733 0.85273 1.90687 1.57759 1.19725 1.77600 1.20116 0.99931 0.96064 0.92894 1.20609 0.95464 0.99964 0.92585 1.22951 0.98610 1.00423 0.97610 1.42651 1.21732 1.29216 1.09183 1.21717 1.00713 0.97395 0.90092 1.16624 0.97382 0.97350 0.83283 1.91564 1.93364 1.80326 1.44456 1.21328 1.01490 1.01597 0.89997 1.20363 0.94099 0.93933 1.00104 1.21414 0.98155 1.03423 0.83338 1.70741 1.12728 1.11068 1.28081 0.90653 0.90167 0.91790 0.94300 0.95776 0.79704 0.94399 0.88948 0.91497 0.90588 0.87626 0.82438 0.74809 0.77230 0.79965 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.19 71.98 0.66 -2.70 16 2 C 0.13 4.68 2.80 44.99 0.13 4.81 16 3 H 0.06 2.55 6.90 -2.39 -0.02 2.53 16 4 C 0.14 5.89 5.50 86.38 0.48 6.37 16 5 N -0.74 -40.72 5.43 -343.47 -1.87 -42.59 16 6 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 7 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 8 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 9 N -0.97 -63.86 13.06 21.65 0.28 -63.57 16 10 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 13 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 14 N -0.60 -20.06 2.24 -822.58 -1.85 -21.91 16 15 C 0.08 1.80 9.30 127.77 1.19 2.99 16 16 C 0.51 19.48 7.37 87.66 0.65 20.13 16 17 O -0.58 -28.46 14.89 -3.04 -0.05 -28.51 16 18 C -0.05 -1.43 4.81 29.10 0.14 -1.29 16 19 C 0.05 1.53 5.85 41.59 0.24 1.78 16 20 C -0.06 -1.50 11.63 83.20 0.97 -0.53 16 21 N -0.36 -8.85 2.95 -351.92 -1.04 -9.88 16 22 C 0.02 0.40 10.92 83.23 0.91 1.31 16 23 C 0.08 1.32 7.25 22.13 0.16 1.48 16 24 F -0.12 -1.88 17.26 44.97 0.78 -1.11 16 25 C -0.12 -2.24 10.05 22.33 0.22 -2.02 16 26 C -0.06 -1.72 10.10 22.41 0.23 -1.49 16 27 C 0.18 5.98 7.81 134.10 1.05 7.03 16 28 N -0.51 -21.03 10.67 -182.42 -1.95 -22.98 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.59 7.67 -2.39 -0.02 1.57 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.49 6.88 -2.39 -0.02 1.48 16 33 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.37 22.81 7.06 -92.70 -0.65 22.16 16 35 H 0.25 15.93 8.31 -92.70 -0.77 15.16 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.74 6.53 -2.38 -0.02 1.72 16 38 H 0.08 1.70 6.44 -2.39 -0.02 1.69 16 39 H 0.11 3.14 7.40 -2.39 -0.02 3.12 16 40 H 0.16 2.55 8.07 -2.39 -0.02 2.53 16 41 H 0.24 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -91.97 373.33 5.05 -86.92 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.38 Total: 33.24 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 8.32 Total: 20.02 kcal Atomic # 7 Polarization: -154.52 SS G_CDS: -6.41 Total: -160.93 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.05 Total: -28.51 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -91.97 5.05 -86.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753704921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.961 kcal (2) G-P(sol) polarization free energy of solvation -91.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds