Wall clock time and date at job start Tue Mar 31 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47226 * 274.35376 * 3 2 1 5 5 H 1.48500 * 109.47174 * 34.35585 * 3 2 1 6 6 H 1.48504 * 109.46793 * 154.35251 * 3 2 1 7 7 C 1.38811 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00710 * 353.70524 * 7 2 1 9 9 N 1.36945 * 119.99620 * 173.70664 * 7 2 1 10 10 C 1.46495 * 120.00106 * 181.99066 * 9 7 2 11 11 C 1.53003 * 109.47402 * 81.91308 * 10 9 7 12 12 H 1.09001 * 109.87192 * 303.83923 * 11 10 9 13 13 C 1.54323 * 109.88230 * 182.82394 * 11 10 9 14 14 C 1.55151 * 102.94063 * 218.38836 * 13 11 10 15 15 C 1.54909 * 101.61788 * 35.48285 * 14 13 11 16 16 N 1.47019 * 109.87974 * 65.01072 * 11 10 9 17 17 C 1.34772 * 125.65381 * 298.39670 * 16 11 10 18 18 O 1.21279 * 119.99966 * 5.47914 * 17 16 11 19 19 C 1.50695 * 120.00120 * 185.48805 * 17 16 11 20 20 C 1.52994 * 110.44213 * 72.11854 * 19 17 16 21 21 F 1.39899 * 109.47238 * 70.10664 * 20 19 17 22 22 F 1.39901 * 109.47498 * 190.10797 * 20 19 17 23 23 F 1.39910 * 109.46969 * 310.10929 * 20 19 17 24 24 C 1.54895 * 110.48229 * 309.57739 * 19 17 16 25 25 C 1.55246 * 102.58575 * 279.18910 * 24 19 17 26 26 C 1.54269 * 104.23053 * 322.08339 * 25 24 19 27 27 C 1.53870 * 106.60060 * 23.61409 * 26 25 24 28 28 H 0.96994 * 120.00507 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 1.98109 * 9 7 2 30 30 H 1.09007 * 109.47050 * 321.91402 * 10 9 7 31 31 H 1.09000 * 109.47528 * 201.91556 * 10 9 7 32 32 H 1.09002 * 110.72144 * 100.02859 * 13 11 10 33 33 H 1.08997 * 110.87412 * 336.82453 * 13 11 10 34 34 H 1.08998 * 111.00583 * 153.57451 * 14 13 11 35 35 H 1.09009 * 111.00726 * 277.39272 * 14 13 11 36 36 H 1.09002 * 110.36486 * 81.84679 * 15 14 13 37 37 H 1.08996 * 110.36974 * 204.17212 * 15 14 13 38 38 H 1.08995 * 110.75895 * 37.58105 * 24 19 17 39 39 H 1.09000 * 110.75732 * 160.95729 * 24 19 17 40 40 H 1.09005 * 110.46435 * 203.39687 * 25 24 19 41 41 H 1.08996 * 110.46978 * 80.77687 * 25 24 19 42 42 H 1.09000 * 110.03256 * 264.32114 * 26 25 24 43 43 H 1.08997 * 110.02493 * 142.89639 * 26 25 24 44 44 H 1.08998 * 110.03290 * 240.71608 * 27 26 25 45 45 H 1.08998 * 110.03510 * 119.28297 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0996 -1.3960 5 1 1.4966 2.6243 0.7901 6 1 3.5907 1.4154 0.6060 7 6 2.0103 -1.2022 0.0005 8 1 1.4753 -2.1346 0.1035 9 7 3.3735 -1.2058 -0.1295 10 6 4.1019 -2.4761 -0.1728 11 6 4.0448 -3.0487 -1.5905 12 1 3.0068 -3.1549 -1.9057 13 6 4.7487 -4.4215 -1.6307 14 6 5.4779 -4.3980 -2.9999 15 6 5.8896 -2.9086 -3.1086 16 7 4.7638 -2.1621 -2.5170 17 6 4.4466 -0.8793 -2.7821 18 8 3.5576 -0.3341 -2.1630 19 6 5.1965 -0.1225 -3.8479 20 6 4.8035 -0.6267 -5.2379 21 9 3.4900 -0.2373 -5.5212 22 9 5.6678 -0.0816 -6.1934 23 9 4.8933 -2.0226 -5.2703 24 6 6.7247 -0.2570 -3.6346 25 6 7.0068 0.7996 -2.5327 26 6 6.0772 1.9777 -2.8903 27 6 4.9262 1.3915 -3.7264 28 1 -0.4850 0.8399 -0.0004 29 1 3.8568 -0.3671 -0.1930 30 1 3.6451 -3.1807 0.5223 31 1 5.1412 -2.3089 0.1100 32 1 4.0187 -5.2303 -1.5964 33 1 5.4645 -4.5150 -0.8141 34 1 6.3545 -5.0457 -2.9869 35 1 4.8012 -4.6762 -3.8080 36 1 6.8040 -2.7256 -2.5442 37 1 6.0249 -2.6276 -4.1530 38 1 6.9797 -1.2583 -3.2874 39 1 7.2653 -0.0149 -4.5496 40 1 8.0501 1.1138 -2.5641 41 1 6.7567 0.4012 -1.5495 42 1 6.6223 2.7197 -3.4737 43 1 5.6842 2.4324 -1.9810 44 1 4.9127 1.8488 -4.7157 45 1 3.9746 1.5616 -3.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754622794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:43 Heat of formation + Delta-G solvation = -129.218577 kcal Electronic energy + Delta-G solvation = -33273.564470 eV Core-core repulsion = 28685.076569 eV Total energy + Delta-G solvation = -4588.487901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -50.26813 -47.82017 -47.60568 -40.43382 -38.06199 -36.48303 -34.39184 -31.80987 -31.23303 -30.25812 -29.30136 -28.52897 -25.31105 -24.76574 -23.73487 -21.96628 -21.23573 -20.84849 -20.16621 -18.91052 -18.42250 -18.25676 -17.96544 -17.54287 -16.27972 -15.96355 -15.57034 -14.85491 -14.61203 -14.48852 -14.33972 -14.13526 -14.07551 -14.00925 -13.80304 -13.69350 -13.53630 -13.33814 -12.98448 -12.71578 -12.62050 -12.25200 -12.12347 -11.66894 -11.60572 -11.50344 -11.35929 -11.22697 -11.10643 -10.92080 -10.68652 -10.61186 -10.51795 -10.44542 -10.24686 -9.85765 -9.40616 -9.28360 -8.57352 -8.14217 -6.81805 -5.51247 -2.80577 2.41380 3.08447 3.15314 3.59122 3.64715 3.68746 3.74256 3.82038 4.07557 4.43596 4.48906 4.57256 4.69775 4.88691 4.91286 5.02362 5.09162 5.19528 5.22431 5.31861 5.36067 5.48552 5.55958 5.64083 5.68117 5.77877 5.79542 5.83834 5.85076 5.93975 6.02992 6.05428 6.11450 6.13725 6.16883 6.32545 6.35849 6.49770 6.78712 6.94769 7.95143 8.21475 8.64706 8.71171 9.50529 10.25917 10.43356 11.67721 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.007080 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.237546 B = 3953.585135 C = 5028.730625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.010 3.990 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.287 1.287 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.729 5.729 10 C 0.150 3.850 11 C 0.113 3.887 12 H 0.078 0.922 13 C -0.127 4.127 14 C -0.131 4.131 15 C 0.066 3.934 16 N -0.601 5.601 17 C 0.520 3.480 18 O -0.437 6.437 19 C -0.131 4.131 20 C 0.467 3.533 21 F -0.171 7.171 22 F -0.180 7.180 23 F -0.170 7.170 24 C -0.133 4.133 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.253 0.747 29 H 0.365 0.635 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.995 -4.507 -10.711 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.733 3.267 4 H -0.207 1.207 5 H -0.236 1.236 6 H -0.214 1.214 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.371 5.371 10 C 0.019 3.981 11 C 0.007 3.993 12 H 0.096 0.904 13 C -0.166 4.166 14 C -0.169 4.169 15 C -0.056 4.056 16 N -0.338 5.338 17 C 0.303 3.697 18 O -0.305 6.305 19 C -0.136 4.136 20 C 0.412 3.588 21 F -0.152 7.152 22 F -0.161 7.161 23 F -0.151 7.151 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.150 4.150 28 H 0.063 0.937 29 H 0.200 0.800 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.186 -4.140 -10.358 21.334 hybrid contribution 0.464 1.008 -0.551 1.239 sum 18.650 -3.132 -10.909 21.832 Atomic orbital electron populations 1.69759 1.05320 1.25316 1.58846 1.24490 0.94836 0.97211 1.01887 0.86263 0.78368 0.84840 0.77265 1.20708 1.23621 1.21362 1.18882 0.81401 0.94195 1.40835 0.90114 1.42688 1.04827 1.01658 1.87951 1.21000 0.94796 0.89854 0.92455 1.22706 0.96086 0.87269 0.93242 0.90368 1.22671 0.99795 0.97095 0.97023 1.22720 1.00585 0.95349 0.98213 1.23087 0.89848 0.92114 1.00579 1.48232 1.30457 1.10519 1.44571 1.19072 0.84737 0.81315 0.84614 1.90978 1.27777 1.65581 1.46200 1.23064 1.00191 1.00305 0.90021 1.20178 0.75182 0.75322 0.88108 1.93247 1.36819 1.90611 1.94571 1.93153 1.70076 1.85708 1.67168 1.93010 1.95299 1.30222 1.96547 1.23191 0.90083 1.02547 1.01194 1.22371 0.99760 0.94984 0.98494 1.22085 0.95559 0.97856 1.00242 1.22237 1.02382 0.88557 1.01823 0.93704 0.79969 0.93110 0.94320 0.90517 0.90852 0.90502 0.90858 0.91892 0.88399 0.88346 0.89473 0.90704 0.90986 0.91231 0.90972 0.90614 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.36 13.97 55.49 0.78 -30.59 16 2 C 0.01 0.32 5.44 -17.43 -0.09 0.23 16 3 Si 0.90 24.63 25.96 -169.99 -4.41 20.22 16 4 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.31 -8.57 7.11 56.52 0.40 -8.17 16 6 H -0.29 -7.47 6.54 56.52 0.37 -7.10 16 7 C -0.22 -6.56 9.72 -15.06 -0.15 -6.71 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.73 -17.93 2.97 -59.91 -0.18 -18.11 16 10 C 0.15 2.88 5.77 -4.04 -0.02 2.86 16 11 C 0.11 1.91 3.26 -66.95 -0.22 1.69 16 12 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.13 -1.52 6.47 -24.90 -0.16 -1.68 16 14 C -0.13 -1.33 7.08 -24.59 -0.17 -1.51 16 15 C 0.07 0.76 4.32 -2.50 -0.01 0.75 16 16 N -0.60 -9.55 2.87 -162.98 -0.47 -10.02 16 17 C 0.52 9.48 5.99 -10.99 -0.07 9.41 16 18 O -0.44 -10.19 8.96 5.56 0.05 -10.15 16 19 C -0.13 -1.90 0.26 -154.00 -0.04 -1.94 16 20 C 0.47 6.69 2.24 37.15 0.08 6.77 16 21 F -0.17 -2.91 16.83 2.25 0.04 -2.87 16 22 F -0.18 -2.26 15.85 2.25 0.04 -2.22 16 23 F -0.17 -2.32 12.74 2.25 0.03 -2.30 16 24 C -0.13 -1.45 5.19 -24.54 -0.13 -1.58 16 25 C -0.12 -1.32 6.62 -24.88 -0.16 -1.48 16 26 C -0.12 -1.50 6.80 -25.61 -0.17 -1.67 16 27 C -0.11 -1.67 5.41 -25.61 -0.14 -1.81 16 28 H 0.25 8.11 8.31 -40.82 -0.34 7.77 16 29 H 0.37 9.21 4.58 -40.82 -0.19 9.03 16 30 H 0.05 0.97 8.10 -51.92 -0.42 0.55 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.78 7.86 -51.93 -0.41 0.38 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.62 6.96 -51.93 -0.36 0.26 16 37 H 0.10 1.07 3.80 -51.93 -0.20 0.88 16 38 H 0.10 0.98 3.77 -51.93 -0.20 0.79 16 39 H 0.09 0.81 7.11 -51.93 -0.37 0.44 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 0.99 7.62 -51.93 -0.40 0.60 16 45 H 0.10 1.95 6.77 -51.93 -0.35 1.60 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -34.95 341.70 -6.72 -41.67 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.28 Total: 5.89 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.46 Total: 3.32 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.13 Total: -58.72 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.05 Total: -10.15 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.10 Total: -7.39 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.41 Total: 20.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.95 -6.72 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754622794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.547 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds