Wall clock time and date at job start Tue Mar 31 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47226 * 274.35376 * 3 2 1 5 5 H 1.48500 * 109.47174 * 34.35585 * 3 2 1 6 6 H 1.48504 * 109.46793 * 154.35251 * 3 2 1 7 7 C 1.38811 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00710 * 353.70524 * 7 2 1 9 9 N 1.36945 * 119.99620 * 173.70664 * 7 2 1 10 10 C 1.46495 * 120.00106 * 181.99066 * 9 7 2 11 11 C 1.53003 * 109.47402 * 81.91308 * 10 9 7 12 12 H 1.09001 * 109.87192 * 303.83923 * 11 10 9 13 13 C 1.54323 * 109.88230 * 182.82394 * 11 10 9 14 14 C 1.55151 * 102.94063 * 218.38836 * 13 11 10 15 15 C 1.54909 * 101.61788 * 35.48285 * 14 13 11 16 16 N 1.47019 * 109.87974 * 65.01072 * 11 10 9 17 17 C 1.34772 * 125.65381 * 298.39670 * 16 11 10 18 18 O 1.21279 * 119.99966 * 5.47914 * 17 16 11 19 19 C 1.50695 * 120.00120 * 185.48805 * 17 16 11 20 20 C 1.52994 * 110.44213 * 72.11854 * 19 17 16 21 21 F 1.39899 * 109.47238 * 70.10664 * 20 19 17 22 22 F 1.39901 * 109.47498 * 190.10797 * 20 19 17 23 23 F 1.39910 * 109.46969 * 310.10929 * 20 19 17 24 24 C 1.54895 * 110.48229 * 309.57739 * 19 17 16 25 25 C 1.55246 * 102.58575 * 279.18910 * 24 19 17 26 26 C 1.54269 * 104.23053 * 322.08339 * 25 24 19 27 27 C 1.53870 * 106.60060 * 23.61409 * 26 25 24 28 28 H 0.96994 * 120.00507 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 1.98109 * 9 7 2 30 30 H 1.09007 * 109.47050 * 321.91402 * 10 9 7 31 31 H 1.09000 * 109.47528 * 201.91556 * 10 9 7 32 32 H 1.09002 * 110.72144 * 100.02859 * 13 11 10 33 33 H 1.08997 * 110.87412 * 336.82453 * 13 11 10 34 34 H 1.08998 * 111.00583 * 153.57451 * 14 13 11 35 35 H 1.09009 * 111.00726 * 277.39272 * 14 13 11 36 36 H 1.09002 * 110.36486 * 81.84679 * 15 14 13 37 37 H 1.08996 * 110.36974 * 204.17212 * 15 14 13 38 38 H 1.08995 * 110.75895 * 37.58105 * 24 19 17 39 39 H 1.09000 * 110.75732 * 160.95729 * 24 19 17 40 40 H 1.09005 * 110.46435 * 203.39687 * 25 24 19 41 41 H 1.08996 * 110.46978 * 80.77687 * 25 24 19 42 42 H 1.09000 * 110.03256 * 264.32114 * 26 25 24 43 43 H 1.08997 * 110.02493 * 142.89639 * 26 25 24 44 44 H 1.08998 * 110.03290 * 240.71608 * 27 26 25 45 45 H 1.08998 * 110.03510 * 119.28297 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0996 -1.3960 5 1 1.4966 2.6243 0.7901 6 1 3.5907 1.4154 0.6060 7 6 2.0103 -1.2022 0.0005 8 1 1.4753 -2.1346 0.1035 9 7 3.3735 -1.2058 -0.1295 10 6 4.1019 -2.4761 -0.1728 11 6 4.0448 -3.0487 -1.5905 12 1 3.0068 -3.1549 -1.9057 13 6 4.7487 -4.4215 -1.6307 14 6 5.4779 -4.3980 -2.9999 15 6 5.8896 -2.9086 -3.1086 16 7 4.7638 -2.1621 -2.5170 17 6 4.4466 -0.8793 -2.7821 18 8 3.5576 -0.3341 -2.1630 19 6 5.1965 -0.1225 -3.8479 20 6 4.8035 -0.6267 -5.2379 21 9 3.4900 -0.2373 -5.5212 22 9 5.6678 -0.0816 -6.1934 23 9 4.8933 -2.0226 -5.2703 24 6 6.7247 -0.2570 -3.6346 25 6 7.0068 0.7996 -2.5327 26 6 6.0772 1.9777 -2.8903 27 6 4.9262 1.3915 -3.7264 28 1 -0.4850 0.8399 -0.0004 29 1 3.8568 -0.3671 -0.1930 30 1 3.6451 -3.1807 0.5223 31 1 5.1412 -2.3089 0.1100 32 1 4.0187 -5.2303 -1.5964 33 1 5.4645 -4.5150 -0.8141 34 1 6.3545 -5.0457 -2.9869 35 1 4.8012 -4.6762 -3.8080 36 1 6.8040 -2.7256 -2.5442 37 1 6.0249 -2.6276 -4.1530 38 1 6.9797 -1.2583 -3.2874 39 1 7.2653 -0.0149 -4.5496 40 1 8.0501 1.1138 -2.5641 41 1 6.7567 0.4012 -1.5495 42 1 6.6223 2.7197 -3.4737 43 1 5.6842 2.4324 -1.9810 44 1 4.9127 1.8488 -4.7157 45 1 3.9746 1.5616 -3.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754622794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:34 Heat of formation + Delta-G solvation = -152.552807 kcal Electronic energy + Delta-G solvation = -33274.576318 eV Core-core repulsion = 28685.076569 eV Total energy + Delta-G solvation = -4589.499750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 8.89 seconds Orbital eigenvalues (eV) -51.41142 -48.94485 -48.78615 -41.67706 -39.19848 -37.78690 -36.29554 -33.51174 -32.82463 -31.32472 -30.70245 -29.65449 -26.87611 -25.91710 -25.13670 -23.61684 -22.29068 -21.91082 -21.34542 -20.19996 -19.92086 -19.50204 -19.39345 -19.00954 -17.47555 -17.20398 -16.74759 -16.46193 -16.03257 -15.88012 -15.64585 -15.55708 -15.24095 -15.19952 -15.09932 -14.91755 -14.82983 -14.60796 -14.36355 -14.17275 -13.84276 -13.66750 -13.39565 -13.29034 -12.86361 -12.66053 -12.58832 -12.43182 -12.33755 -12.26126 -12.19760 -12.05939 -11.83668 -11.69513 -11.54096 -11.43619 -11.42581 -10.97424 -10.49018 -9.62600 -8.85595 -7.92651 -5.15010 1.19551 1.31994 1.44708 1.47661 1.86097 1.93250 2.60143 2.62938 2.66960 2.93802 3.39635 3.40238 3.42329 3.50955 3.75197 3.80981 4.02586 4.12073 4.19202 4.21290 4.26329 4.34868 4.37163 4.48480 4.58123 4.65239 4.72164 4.77954 4.87088 4.90749 4.94012 5.01832 5.06475 5.09948 5.14058 5.18223 5.24636 5.34719 5.45214 5.63074 5.82095 6.30634 6.67541 7.23330 7.36787 8.06994 8.20044 9.30198 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.007080 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.237546 B = 3953.585135 C = 5028.730625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.995 5.995 2 C -0.061 4.061 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.316 1.316 6 H -0.267 1.267 7 C -0.191 4.191 8 H 0.049 0.951 9 N -0.731 5.731 10 C 0.143 3.857 11 C 0.115 3.885 12 H 0.025 0.975 13 C -0.116 4.116 14 C -0.121 4.121 15 C 0.058 3.942 16 N -0.600 5.600 17 C 0.511 3.489 18 O -0.503 6.503 19 C -0.129 4.129 20 C 0.468 3.532 21 F -0.194 7.194 22 F -0.164 7.164 23 F -0.165 7.165 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.116 4.116 28 H 0.248 0.752 29 H 0.364 0.636 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.120 -5.601 -11.834 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.648 5.648 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.245 1.245 6 H -0.192 1.192 7 C -0.322 4.322 8 H 0.067 0.933 9 N -0.374 5.374 10 C 0.014 3.986 11 C 0.009 3.991 12 H 0.043 0.957 13 C -0.155 4.155 14 C -0.159 4.159 15 C -0.062 4.062 16 N -0.335 5.335 17 C 0.296 3.704 18 O -0.376 6.376 19 C -0.133 4.133 20 C 0.414 3.586 21 F -0.175 7.175 22 F -0.145 7.145 23 F -0.147 7.147 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.154 4.154 28 H 0.056 0.944 29 H 0.199 0.801 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.418 -5.315 -11.502 26.627 hybrid contribution -1.106 1.184 -0.260 1.641 sum 22.313 -4.131 -11.763 25.559 Atomic orbital electron populations 1.69924 1.07110 1.25618 1.62188 1.25173 0.95549 1.00694 1.03683 0.85164 0.77747 0.80516 0.76628 1.21457 1.24474 1.19205 1.18843 0.83596 0.92541 1.37207 0.93321 1.42660 1.03010 1.03790 1.87917 1.21301 0.95702 0.87579 0.93969 1.22423 0.94628 0.90476 0.91613 0.95653 1.22630 1.00103 0.93391 0.99344 1.22754 1.01662 0.95073 0.96377 1.23451 0.89174 0.92283 1.01334 1.48377 1.31211 1.09981 1.43959 1.19732 0.84075 0.81882 0.84729 1.90925 1.30548 1.67224 1.48869 1.23036 1.02495 0.99209 0.88608 1.20171 0.74484 0.75541 0.88410 1.93210 1.38684 1.90881 1.94738 1.93181 1.69292 1.85499 1.66529 1.93017 1.95222 1.29841 1.96571 1.23302 0.86765 1.03430 1.02416 1.22380 1.01225 0.94124 0.97432 1.22124 0.95157 0.99125 0.99309 1.22226 1.01171 0.89535 1.02494 0.94360 0.80082 0.93370 0.91067 0.90100 0.88344 0.86445 0.91734 0.88691 0.87525 0.86872 0.86765 0.87168 0.92927 0.88221 0.93200 0.89168 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -69.82 13.97 21.65 0.30 -69.51 16 2 C -0.06 -3.98 5.44 84.86 0.46 -3.52 16 3 Si 0.97 53.85 25.96 68.60 1.78 55.63 16 4 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 5 H -0.32 -17.70 7.11 99.48 0.71 -16.99 16 6 H -0.27 -13.63 6.54 99.48 0.65 -12.98 16 7 C -0.19 -11.70 9.72 84.03 0.82 -10.89 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.73 -36.60 2.97 -343.45 -1.02 -37.62 16 10 C 0.14 5.39 5.77 86.38 0.50 5.89 16 11 C 0.11 3.81 3.26 45.34 0.15 3.96 16 12 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 13 C -0.12 -2.41 6.47 31.78 0.21 -2.20 16 14 C -0.12 -1.92 7.08 31.98 0.23 -1.70 16 15 C 0.06 1.08 4.32 86.85 0.38 1.45 16 16 N -0.60 -18.11 2.87 -787.95 -2.26 -20.37 16 17 C 0.51 18.49 5.99 87.66 0.53 19.01 16 18 O -0.50 -24.27 8.96 -3.03 -0.03 -24.30 16 19 C -0.13 -3.53 0.26 -51.85 -0.01 -3.54 16 20 C 0.47 12.67 2.24 71.98 0.16 12.84 16 21 F -0.19 -6.67 16.83 44.97 0.76 -5.91 16 22 F -0.16 -3.61 15.85 44.97 0.71 -2.90 16 23 F -0.17 -4.16 12.74 44.97 0.57 -3.59 16 24 C -0.12 -2.13 5.19 32.01 0.17 -1.97 16 25 C -0.11 -2.10 6.62 31.80 0.21 -1.89 16 26 C -0.12 -2.75 6.80 31.32 0.21 -2.54 16 27 C -0.12 -3.42 5.41 31.32 0.17 -3.25 16 28 H 0.25 16.79 8.31 -92.71 -0.77 16.02 16 29 H 0.36 18.52 4.58 -92.71 -0.42 18.09 16 30 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.62 7.86 -2.39 -0.02 1.60 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.10 1.26 6.96 -2.39 -0.02 1.24 16 37 H 0.11 1.85 3.80 -2.39 -0.01 1.84 16 38 H 0.11 1.64 3.77 -2.39 -0.01 1.63 16 39 H 0.11 1.45 7.11 -2.39 -0.02 1.43 16 40 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 2.28 7.62 -2.39 -0.02 2.26 16 45 H 0.05 2.18 6.77 -2.39 -0.02 2.16 16 Total: -1.00 -84.02 341.70 5.53 -78.49 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.55 Total: 18.41 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.16 Total: 11.66 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -2.98 Total: -127.50 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.03 Total: -24.30 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 2.04 Total: -12.40 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.78 Total: 55.63 kcal Total: -84.02 5.53 -78.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754622794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.059 kcal (2) G-P(sol) polarization free energy of solvation -84.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.89 seconds