Wall clock time and date at job start Tue Mar 31 2020 21:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.46829 * 239.99880 * 3 2 1 5 5 H 1.48495 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47257 * 120.00209 * 3 2 1 7 7 C 1.38820 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99657 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46842 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.51297 * 304.89549 * 11 10 9 13 13 C 1.52883 * 109.62299 * 184.90618 * 11 10 9 14 14 N 1.47152 * 108.60642 * 187.89392 * 13 11 10 15 15 C 1.34778 * 120.98205 * 230.50152 * 14 13 11 16 16 O 1.21695 * 120.00016 * 6.61223 * 15 14 13 17 17 C 1.46656 * 119.99627 * 186.61414 * 15 14 13 18 18 C 1.36772 * 125.95508 * 187.41322 * 17 15 14 19 19 C 1.39658 * 106.53383 * 180.02562 * 18 17 15 20 20 C 1.35567 * 107.41159 * 0.05302 * 19 18 17 21 21 O 1.33490 * 108.61546 * 0.12151 * 20 19 18 22 22 C 1.51007 * 123.78940 * 179.86701 * 20 19 18 23 23 C 1.53319 * 108.41529 * 343.23619 * 22 20 19 24 24 C 1.53114 * 109.55490 * 50.18521 * 23 22 20 25 25 C 1.50696 * 128.12330 * 180.02562 * 19 18 17 26 26 C 1.47154 * 118.03167 * 50.22844 * 14 13 11 27 27 C 1.53289 * 108.38621 * 309.71621 * 26 14 13 28 28 O 1.42955 * 109.22930 * 52.30229 * 27 26 14 29 29 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99929 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47397 * 60.00299 * 10 9 7 32 32 H 1.08997 * 109.46849 * 300.00181 * 10 9 7 33 33 H 1.09004 * 109.61647 * 68.07405 * 13 11 10 34 34 H 1.09002 * 109.52216 * 307.66558 * 13 11 10 35 35 H 1.07996 * 126.73116 * 0.02562 * 18 17 15 36 36 H 1.08993 * 109.67565 * 102.96982 * 22 20 19 37 37 H 1.09004 * 109.66972 * 223.47000 * 22 20 19 38 38 H 1.09000 * 109.45545 * 170.21050 * 23 22 20 39 39 H 1.09003 * 109.46037 * 290.17682 * 23 22 20 40 40 H 1.08994 * 109.47428 * 49.75776 * 24 23 22 41 41 H 1.09002 * 109.47655 * 169.77632 * 24 23 22 42 42 H 1.09004 * 109.68469 * 43.86871 * 25 19 18 43 43 H 1.09000 * 109.68628 * 283.31125 * 25 19 18 44 44 H 1.09001 * 109.68239 * 69.43776 * 26 14 13 45 45 H 1.09005 * 109.67809 * 189.95083 * 26 14 13 46 46 H 1.08998 * 109.51214 * 172.23005 * 27 26 14 47 47 H 1.09007 * 109.50744 * 292.37617 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3882 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 1 0.3800 -4.7147 0.8412 13 6 1.8205 -6.1424 0.1220 14 7 0.8685 -7.2478 -0.0713 15 6 0.7998 -8.2661 0.8089 16 8 1.4432 -8.2228 1.8409 17 6 -0.0503 -9.4264 0.5228 18 6 -0.3226 -10.4541 1.3832 19 6 -1.1666 -11.3319 0.6995 20 6 -1.3743 -10.8149 -0.5365 21 8 -0.6969 -9.6692 -0.6384 22 6 -2.2352 -11.4729 -1.5882 23 6 -2.4514 -12.9377 -1.1903 24 6 -2.9213 -13.0094 0.2652 25 6 -1.7628 -12.6244 1.1944 26 6 -0.0104 -7.2053 -1.2508 27 6 -0.6816 -5.8282 -1.3042 28 8 0.3209 -4.8123 -1.2227 29 1 -0.4851 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6846 -3.7147 0.8895 32 1 2.6846 -3.7145 -0.8905 33 1 2.2715 -6.2152 1.1116 34 1 2.5979 -6.1896 -0.6406 35 1 0.0433 -10.5650 2.3932 36 1 -3.1966 -10.9629 -1.6472 37 1 -1.7343 -11.4248 -2.5551 38 1 -3.2070 -13.3821 -1.8381 39 1 -1.5147 -13.4849 -1.2965 40 1 -3.7516 -12.3191 0.4134 41 1 -3.2473 -14.0244 0.4923 42 1 -2.1357 -12.4915 2.2101 43 1 -1.0047 -13.4075 1.1806 44 1 0.5795 -7.3614 -2.1540 45 1 -0.7708 -7.9821 -1.1701 46 1 -1.2283 -5.7258 -2.2416 47 1 -1.3716 -5.7268 -0.4665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755000520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:25 Heat of formation + Delta-G solvation = -47.834500 kcal Electronic energy + Delta-G solvation = -28846.614582 eV Core-core repulsion = 24803.512499 eV Total energy + Delta-G solvation = -4043.102083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -43.21058 -40.21372 -38.32006 -37.59643 -35.10236 -34.42690 -33.40536 -32.26256 -30.70642 -30.28977 -29.69956 -28.05152 -26.01420 -24.32264 -23.56619 -23.10810 -22.40541 -21.83576 -20.92396 -20.19554 -19.26040 -17.60036 -17.11321 -16.89118 -16.64913 -16.46108 -15.99204 -15.43254 -15.13630 -14.87224 -14.52503 -14.45055 -14.35406 -14.12192 -13.92174 -13.48948 -13.24673 -13.21352 -13.09488 -13.00623 -12.68942 -12.63240 -12.38585 -12.03814 -11.58495 -11.42008 -11.33461 -11.05622 -10.99334 -10.86679 -10.76037 -10.58964 -10.25553 -10.03729 -9.96224 -9.89419 -9.66243 -8.83938 -8.77546 -8.48704 -6.87046 -5.70329 -2.99117 0.78511 1.98821 2.20407 2.73597 2.98895 3.48539 3.52164 3.53652 3.96475 4.02592 4.18554 4.31869 4.39120 4.57229 4.62202 4.63445 4.75989 4.89048 4.93316 4.99775 5.01726 5.12529 5.14274 5.25036 5.28493 5.30742 5.38716 5.42179 5.53508 5.58130 5.62166 5.64424 5.65991 5.72656 5.77262 5.82440 5.87493 5.95435 6.13343 6.26314 6.29275 6.57857 6.61711 6.71147 7.12518 7.46657 7.73785 7.83898 8.47682 9.59206 10.16286 10.52183 11.52454 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.002141 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.933188 B =13075.029708 C =13516.748383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.065 0.935 13 C 0.086 3.914 14 N -0.604 5.604 15 C 0.603 3.397 16 O -0.520 6.520 17 C -0.078 4.078 18 C -0.107 4.107 19 C -0.190 4.190 20 C 0.011 3.989 21 O -0.151 6.151 22 C -0.041 4.041 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.051 4.051 26 C 0.064 3.936 27 C 0.047 3.953 28 O -0.357 6.357 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -30.710 -3.060 31.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.036 3.964 11 C 0.014 3.986 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.337 5.337 15 C 0.392 3.608 16 O -0.398 6.398 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.191 4.191 20 C -0.041 4.041 21 O -0.047 6.047 22 C -0.078 4.078 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.088 4.088 26 C -0.058 4.058 27 C -0.031 4.031 28 O -0.275 6.275 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.446 -30.208 -2.916 31.025 hybrid contribution 0.097 0.717 0.241 0.763 sum -6.349 -29.491 -2.675 30.285 Atomic orbital electron populations 1.69664 1.05120 1.25682 1.57628 1.24753 0.95538 0.97693 1.03048 0.86240 0.78473 0.83471 0.77828 1.21265 1.21730 1.21280 1.19185 0.91000 0.84073 1.42808 0.91156 1.42220 1.06012 0.99476 1.89373 1.20615 0.92353 0.84587 0.98881 1.22731 0.94295 0.94123 0.87424 0.91750 1.22356 0.91606 0.85166 1.04537 1.48032 1.38531 1.22355 1.24764 1.16658 0.80559 0.80394 0.83211 1.90879 1.44959 1.79106 1.24893 1.22030 1.04597 1.00291 0.86054 1.21595 0.98041 0.92424 1.00729 1.20151 1.04142 1.00301 0.94495 1.22871 0.97501 0.86310 0.97437 1.84075 1.49901 1.35371 1.35383 1.20352 0.97540 0.94830 0.95099 1.21599 1.02428 0.94348 0.97021 1.21656 0.97988 1.02090 0.94333 1.20110 0.97016 0.92436 0.99206 1.22877 0.94730 1.00092 0.88134 1.22915 0.90891 0.86265 1.03003 1.88160 1.49440 1.52024 1.37875 0.93514 0.77903 0.94551 0.95211 0.87704 0.90004 0.82249 0.89004 0.89301 0.90242 0.91097 0.91349 0.90954 0.90468 0.90590 0.90200 0.87571 0.87626 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.29 5.55 -59.91 -0.33 -19.62 16 10 C 0.16 3.44 5.93 -4.04 -0.02 3.41 16 11 C 0.07 1.30 2.80 -26.79 -0.07 1.22 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.09 1.29 5.92 -3.75 -0.02 1.27 16 14 N -0.60 -8.58 3.03 -174.07 -0.53 -9.11 16 15 C 0.60 9.04 7.66 -12.86 -0.10 8.94 16 16 O -0.52 -9.15 16.35 5.19 0.08 -9.06 16 17 C -0.08 -1.00 6.77 -36.72 -0.25 -1.25 16 18 C -0.11 -1.21 10.61 -39.58 -0.42 -1.63 16 19 C -0.19 -1.75 5.93 -105.05 -0.62 -2.37 16 20 C 0.01 0.10 7.22 -35.11 -0.25 -0.15 16 21 O -0.15 -1.65 7.29 5.56 0.04 -1.61 16 22 C -0.04 -0.22 6.30 -27.57 -0.17 -0.40 16 23 C -0.12 -0.48 5.89 -26.51 -0.16 -0.63 16 24 C -0.12 -0.56 5.91 -26.46 -0.16 -0.72 16 25 C -0.05 -0.32 6.28 -27.67 -0.17 -0.49 16 26 C 0.06 0.76 6.25 -3.54 -0.02 0.74 16 27 C 0.05 0.64 6.98 37.31 0.26 0.90 16 28 O -0.36 -6.44 10.33 -35.23 -0.36 -6.81 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.39 10.92 7.67 -40.82 -0.31 10.61 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.61 7.06 -51.93 -0.37 1.25 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 40 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.11 1.14 4.44 -52.28 -0.23 0.91 16 46 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -34.80 377.87 -9.35 -44.15 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.22 Total: 5.50 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.43 Total: 1.25 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.13 Total: -57.00 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.24 Total: -17.48 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.80 -9.35 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755000520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.681 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds