Wall clock time and date at job start Tue Mar 31 2020 21:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48501 * 109.46829 * 239.99880 * 3 2 1 5 5 H 1.48495 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47257 * 120.00209 * 3 2 1 7 7 C 1.38820 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99657 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46842 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.51297 * 304.89549 * 11 10 9 13 13 C 1.52883 * 109.62299 * 184.90618 * 11 10 9 14 14 N 1.47152 * 108.60642 * 187.89392 * 13 11 10 15 15 C 1.34778 * 120.98205 * 230.50152 * 14 13 11 16 16 O 1.21695 * 120.00016 * 6.61223 * 15 14 13 17 17 C 1.46656 * 119.99627 * 186.61414 * 15 14 13 18 18 C 1.36772 * 125.95508 * 187.41322 * 17 15 14 19 19 C 1.39658 * 106.53383 * 180.02562 * 18 17 15 20 20 C 1.35567 * 107.41159 * 0.05302 * 19 18 17 21 21 O 1.33490 * 108.61546 * 0.12151 * 20 19 18 22 22 C 1.51007 * 123.78940 * 179.86701 * 20 19 18 23 23 C 1.53319 * 108.41529 * 343.23619 * 22 20 19 24 24 C 1.53114 * 109.55490 * 50.18521 * 23 22 20 25 25 C 1.50696 * 128.12330 * 180.02562 * 19 18 17 26 26 C 1.47154 * 118.03167 * 50.22844 * 14 13 11 27 27 C 1.53289 * 108.38621 * 309.71621 * 26 14 13 28 28 O 1.42955 * 109.22930 * 52.30229 * 27 26 14 29 29 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99929 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47397 * 60.00299 * 10 9 7 32 32 H 1.08997 * 109.46849 * 300.00181 * 10 9 7 33 33 H 1.09004 * 109.61647 * 68.07405 * 13 11 10 34 34 H 1.09002 * 109.52216 * 307.66558 * 13 11 10 35 35 H 1.07996 * 126.73116 * 0.02562 * 18 17 15 36 36 H 1.08993 * 109.67565 * 102.96982 * 22 20 19 37 37 H 1.09004 * 109.66972 * 223.47000 * 22 20 19 38 38 H 1.09000 * 109.45545 * 170.21050 * 23 22 20 39 39 H 1.09003 * 109.46037 * 290.17682 * 23 22 20 40 40 H 1.08994 * 109.47428 * 49.75776 * 24 23 22 41 41 H 1.09002 * 109.47655 * 169.77632 * 24 23 22 42 42 H 1.09004 * 109.68469 * 43.86871 * 25 19 18 43 43 H 1.09000 * 109.68628 * 283.31125 * 25 19 18 44 44 H 1.09001 * 109.68239 * 69.43776 * 26 14 13 45 45 H 1.09005 * 109.67809 * 189.95083 * 26 14 13 46 46 H 1.08998 * 109.51214 * 172.23005 * 27 26 14 47 47 H 1.09007 * 109.50744 * 292.37617 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3882 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 1 0.3800 -4.7147 0.8412 13 6 1.8205 -6.1424 0.1220 14 7 0.8685 -7.2478 -0.0713 15 6 0.7998 -8.2661 0.8089 16 8 1.4432 -8.2228 1.8409 17 6 -0.0503 -9.4264 0.5228 18 6 -0.3226 -10.4541 1.3832 19 6 -1.1666 -11.3319 0.6995 20 6 -1.3743 -10.8149 -0.5365 21 8 -0.6969 -9.6692 -0.6384 22 6 -2.2352 -11.4729 -1.5882 23 6 -2.4514 -12.9377 -1.1903 24 6 -2.9213 -13.0094 0.2652 25 6 -1.7628 -12.6244 1.1944 26 6 -0.0104 -7.2053 -1.2508 27 6 -0.6816 -5.8282 -1.3042 28 8 0.3209 -4.8123 -1.2227 29 1 -0.4851 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6846 -3.7147 0.8895 32 1 2.6846 -3.7145 -0.8905 33 1 2.2715 -6.2152 1.1116 34 1 2.5979 -6.1896 -0.6406 35 1 0.0433 -10.5650 2.3932 36 1 -3.1966 -10.9629 -1.6472 37 1 -1.7343 -11.4248 -2.5551 38 1 -3.2070 -13.3821 -1.8381 39 1 -1.5147 -13.4849 -1.2965 40 1 -3.7516 -12.3191 0.4134 41 1 -3.2473 -14.0244 0.4923 42 1 -2.1357 -12.4915 2.2101 43 1 -1.0047 -13.4075 1.1806 44 1 0.5795 -7.3614 -2.1540 45 1 -0.7708 -7.9821 -1.1701 46 1 -1.2283 -5.7258 -2.2416 47 1 -1.3716 -5.7268 -0.4665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755000520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:02 Heat of formation + Delta-G solvation = -70.647735 kcal Electronic energy + Delta-G solvation = -28847.603838 eV Core-core repulsion = 24803.512499 eV Total energy + Delta-G solvation = -4044.091339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 31.70 seconds Orbital eigenvalues (eV) -44.00934 -41.39464 -39.59244 -38.10199 -36.72016 -35.90717 -34.13460 -33.99344 -32.06909 -31.15977 -30.56479 -29.30781 -27.48272 -25.44051 -24.80423 -24.17243 -23.33374 -22.82865 -22.26464 -21.10085 -20.05938 -19.24548 -18.49650 -17.89007 -17.73447 -17.44963 -17.13612 -16.69994 -16.46001 -16.00801 -15.76999 -15.59389 -15.36417 -15.06276 -14.75629 -14.59313 -14.51810 -14.42632 -14.23150 -13.95965 -13.82673 -13.52222 -13.37112 -13.10602 -12.93542 -12.76024 -12.66853 -12.33487 -12.11775 -11.91539 -11.80860 -11.76632 -11.71952 -11.46769 -11.40854 -11.20087 -10.96184 -10.76164 -9.86344 -9.36369 -9.02383 -7.94385 -5.24433 -0.12710 1.21465 1.30542 1.47393 1.51680 1.57552 1.72703 1.94710 2.56210 2.68674 3.18718 3.39163 3.48121 3.65933 3.72110 3.80754 3.86735 3.98079 4.00020 4.01873 4.09605 4.16039 4.28509 4.35523 4.37590 4.43411 4.47281 4.58497 4.60167 4.65228 4.70749 4.76526 4.87596 4.91812 4.93317 5.02747 5.04774 5.07529 5.15435 5.20112 5.22761 5.45652 5.47819 5.51165 5.78186 6.06098 6.15237 6.26308 6.71421 7.32531 8.05735 8.30744 9.29217 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.002141 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.933188 B =13075.029708 C =13516.748383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.047 0.953 13 C 0.095 3.905 14 N -0.607 5.607 15 C 0.601 3.399 16 O -0.558 6.558 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.201 4.201 20 C 0.021 3.979 21 O -0.154 6.154 22 C -0.043 4.043 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.052 4.052 26 C 0.071 3.929 27 C 0.043 3.957 28 O -0.384 6.384 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.132 0.868 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -32.749 -4.435 33.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.035 3.965 11 C 0.027 3.973 12 H 0.065 0.935 13 C -0.028 4.028 14 N -0.338 5.338 15 C 0.392 3.608 16 O -0.439 6.439 17 C -0.160 4.160 18 C -0.128 4.128 19 C -0.202 4.202 20 C -0.032 4.032 21 O -0.051 6.051 22 C -0.080 4.080 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.089 4.089 26 C -0.050 4.050 27 C -0.035 4.035 28 O -0.302 6.302 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.140 0.860 46 H 0.150 0.850 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.889 -32.286 -4.309 33.292 hybrid contribution 0.171 1.197 0.641 1.369 sum -6.718 -31.088 -3.668 32.017 Atomic orbital electron populations 1.69837 1.06756 1.26191 1.59304 1.25660 0.96484 1.01364 1.03542 0.85124 0.77116 0.78692 0.78278 1.20218 1.22103 1.20239 1.19644 0.91644 0.85153 1.41564 0.90257 1.42418 1.05649 1.00874 1.89442 1.20757 0.92939 0.83674 0.99179 1.22410 0.93553 0.94251 0.87038 0.93534 1.22148 0.91682 0.84202 1.04751 1.48103 1.38589 1.21823 1.25320 1.16927 0.80332 0.80926 0.82635 1.90842 1.46670 1.80063 1.26354 1.21603 1.06572 1.00426 0.87413 1.21833 0.97808 0.92480 1.00722 1.20507 1.03921 1.01237 0.94527 1.23728 0.96103 0.85051 0.98281 1.84016 1.50089 1.36383 1.34607 1.20649 0.97468 0.95389 0.94483 1.21640 1.03106 0.93368 0.97036 1.21676 0.97004 1.03004 0.94232 1.20230 0.97829 0.91065 0.99785 1.22949 0.94888 0.99434 0.87732 1.23181 0.90064 0.86057 1.04149 1.88101 1.50535 1.54047 1.37551 0.93984 0.79407 0.93571 0.94802 0.88296 0.88570 0.82340 0.87474 0.87920 0.87947 0.91255 0.91527 0.89251 0.90302 0.89920 0.88733 0.86034 0.84983 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 3 Si 0.98 47.35 29.55 68.60 2.03 49.37 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.74 -40.11 5.55 -343.45 -1.91 -42.01 16 10 C 0.16 6.85 5.93 86.38 0.51 7.36 16 11 C 0.09 3.13 2.80 30.56 0.09 3.21 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 C 0.09 2.88 5.92 86.22 0.51 3.39 16 14 N -0.61 -17.19 3.03 -822.86 -2.49 -19.67 16 15 C 0.60 18.35 7.66 86.44 0.66 19.02 16 16 O -0.56 -20.39 16.35 -4.33 -0.07 -20.46 16 17 C -0.11 -2.77 6.77 24.13 0.16 -2.61 16 18 C -0.11 -2.43 10.61 22.27 0.24 -2.19 16 19 C -0.20 -3.43 5.93 -20.14 -0.12 -3.55 16 20 C 0.02 0.33 7.22 25.16 0.18 0.51 16 21 O -0.15 -3.17 7.29 -3.02 -0.02 -3.19 16 22 C -0.04 -0.32 6.30 30.05 0.19 -0.13 16 23 C -0.11 -0.53 5.89 30.74 0.18 -0.35 16 24 C -0.12 -0.75 5.91 30.77 0.18 -0.57 16 25 C -0.05 -0.55 6.28 29.99 0.19 -0.36 16 26 C 0.07 1.62 6.25 86.35 0.54 2.16 16 27 C 0.04 1.12 6.98 72.08 0.50 1.62 16 28 O -0.38 -13.88 10.33 -148.98 -1.54 -15.42 16 29 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.37 21.81 7.67 -92.71 -0.71 21.10 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 3.12 7.06 -2.38 -0.02 3.11 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.07 0.38 8.11 -2.39 -0.02 0.36 16 40 H 0.07 0.45 8.11 -2.39 -0.02 0.43 16 41 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.12 2.42 4.44 -8.01 -0.04 2.39 16 46 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -76.29 377.87 1.85 -74.44 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.25 Total: 28.47 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.32 Total: 9.70 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.11 Total: -122.92 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.63 Total: -39.07 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.29 1.85 -74.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755000520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.790 kcal (2) G-P(sol) polarization free energy of solvation -76.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.70 seconds