Wall clock time and date at job start Tue Mar 31 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00300 * 3 2 1 5 5 H 1.48503 * 109.47177 * 29.99774 * 3 2 1 6 6 H 1.48494 * 109.47429 * 150.00197 * 3 2 1 7 7 C 1.38815 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.46512 * 119.99888 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46609 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.85355 * 316.19424 * 11 10 9 13 13 C 1.53782 * 113.61564 * 87.50805 * 11 10 9 14 14 C 1.53775 * 87.08307 * 139.97496 * 13 11 10 15 15 H 1.09000 * 113.68650 * 220.00734 * 14 13 11 16 16 N 1.46493 * 113.61520 * 89.11973 * 14 13 11 17 17 C 1.34775 * 120.00645 * 107.49758 * 16 14 13 18 18 O 1.21282 * 119.99652 * 0.02562 * 17 16 14 19 19 C 1.50693 * 120.00583 * 179.97438 * 17 16 14 20 20 C 1.53007 * 110.05264 * 58.58396 * 19 17 16 21 21 F 1.39899 * 109.47334 * 181.41518 * 20 19 17 22 22 F 1.39901 * 109.47183 * 301.42055 * 20 19 17 23 23 F 1.39905 * 109.46502 * 61.41972 * 20 19 17 24 24 C 1.53869 * 110.03789 * 180.02562 * 19 17 16 25 25 C 1.54266 * 106.60031 * 119.28673 * 24 19 17 26 26 C 1.54894 * 104.31305 * 336.32486 * 25 24 19 27 27 C 1.54266 * 110.03451 * 297.17247 * 19 17 16 28 28 C 1.53784 * 87.08165 * 334.56528 * 14 13 11 29 29 H 0.96998 * 119.99648 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00173 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46486 * 59.99993 * 10 9 7 32 32 H 1.08996 * 109.46791 * 299.99650 * 10 9 7 33 33 H 1.09004 * 113.61447 * 25.42025 * 13 11 10 34 34 H 1.08997 * 113.61207 * 254.52796 * 13 11 10 35 35 H 0.97001 * 119.99727 * 287.49721 * 16 14 13 36 36 H 1.09001 * 110.02983 * 0.02562 * 24 19 17 37 37 H 1.08996 * 110.07773 * 238.59568 * 24 19 17 38 38 H 1.09002 * 110.48629 * 95.07240 * 25 24 19 39 39 H 1.08998 * 110.48744 * 217.58143 * 25 24 19 40 40 H 1.08996 * 110.75388 * 156.31523 * 26 25 24 41 41 H 1.08993 * 110.76071 * 279.69749 * 26 25 24 42 42 H 1.09005 * 110.48526 * 23.00238 * 27 19 17 43 43 H 1.09006 * 110.48581 * 145.64431 * 27 19 17 44 44 H 1.09002 * 113.61112 * 139.97948 * 28 14 13 45 45 H 1.08994 * 113.61420 * 270.79867 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.2379 -4.6702 0.6957 13 6 0.6162 -5.2484 -1.4073 14 6 0.7044 -6.7000 -0.9077 15 1 1.1223 -7.3907 -1.6402 16 7 -0.5388 -7.1907 -0.3078 17 6 -1.2960 -8.0901 -0.9668 18 8 -0.9479 -8.4936 -2.0562 19 6 -2.5745 -8.5953 -0.3494 20 6 -3.5200 -7.4253 -0.0695 21 9 -4.6886 -7.9038 0.5324 22 9 -2.8934 -6.5141 0.7874 23 9 -3.8423 -6.7882 -1.2727 24 6 -3.2511 -9.6066 -1.2913 25 6 -3.3308 -10.9409 -0.5212 26 6 -2.2018 -10.8418 0.5346 27 6 -2.2667 -9.3508 0.9598 28 6 1.7304 -6.2001 0.1230 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.6847 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 1.3398 -5.0102 -2.1870 34 1 -0.3967 -4.9337 -1.6582 35 1 -0.8170 -6.8683 0.5637 36 1 -2.6544 -9.7324 -2.1948 37 1 -4.2530 -9.2645 -1.5502 38 1 -4.3007 -11.0430 -0.0343 39 1 -3.1521 -11.7804 -1.1931 40 1 -2.4063 -11.4969 1.3814 41 1 -1.2347 -11.0748 0.0892 42 1 -1.3090 -9.0296 1.3696 43 1 -3.0647 -9.1961 1.6862 44 1 1.6168 -6.6537 1.1076 45 1 2.7586 -6.2235 -0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755484011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:16 Heat of formation + Delta-G solvation = -167.897661 kcal Electronic energy + Delta-G solvation = -30424.014570 eV Core-core repulsion = 25833.849418 eV Total energy + Delta-G solvation = -4590.165152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.46898 -47.95835 -47.87714 -40.85346 -39.06412 -37.31192 -34.60853 -33.36224 -31.20440 -30.59608 -29.27561 -26.85083 -25.53909 -25.17586 -23.78786 -22.69828 -21.49114 -21.28875 -20.28953 -19.18093 -18.91837 -18.52181 -18.29627 -17.05730 -16.78233 -16.31650 -15.55616 -15.06833 -14.85108 -14.78273 -14.70899 -14.61718 -14.36384 -14.21892 -14.11076 -13.98889 -13.90507 -13.72291 -13.44764 -13.33063 -12.79573 -12.44680 -12.28274 -12.11240 -11.87921 -11.68985 -11.67066 -11.62575 -11.48282 -11.02933 -11.01682 -10.82038 -10.50075 -10.35861 -10.15315 -10.10634 -9.83198 -9.60660 -9.14236 -8.83051 -6.88081 -5.73427 -3.01797 1.88371 2.55883 2.65900 3.34613 3.45251 3.46561 3.50057 3.51947 3.67683 4.08702 4.15298 4.33160 4.59031 4.59941 4.64461 4.75590 4.78797 4.85013 4.95448 5.07895 5.11627 5.13902 5.24334 5.42840 5.51341 5.60309 5.61945 5.63180 5.68249 5.81809 5.90317 5.91181 5.98182 6.10114 6.20440 6.27856 6.41552 6.57091 6.79028 6.93436 7.20836 7.72175 7.84875 8.45612 9.56496 10.15793 10.50156 11.49508 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002777 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.856751 B =10081.292700 C =10840.203483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.138 4.138 14 C 0.113 3.887 15 H 0.102 0.898 16 N -0.701 5.701 17 C 0.530 3.470 18 O -0.515 6.515 19 C -0.132 4.132 20 C 0.464 3.536 21 F -0.173 7.173 22 F -0.175 7.175 23 F -0.172 7.172 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.137 4.137 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 -25.778 1.983 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.036 3.964 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.177 4.177 14 C 0.009 3.991 15 H 0.120 0.880 16 N -0.353 5.353 17 C 0.314 3.686 18 O -0.390 6.390 19 C -0.137 4.137 20 C 0.410 3.590 21 F -0.155 7.155 22 F -0.156 7.156 23 F -0.153 7.153 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.153 4.153 28 C -0.175 4.175 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.684 -25.897 1.206 26.773 hybrid contribution -0.259 1.605 0.520 1.707 sum -6.943 -24.293 1.726 25.324 Atomic orbital electron populations 1.69666 1.05100 1.25585 1.57872 1.24747 0.95525 0.97686 1.03160 0.86191 0.78620 0.83894 0.77504 1.21751 1.21794 1.20798 1.19237 0.91002 0.84267 1.42499 0.91253 1.42355 1.05865 0.99993 1.89396 1.20628 0.92948 0.85198 0.97669 1.22777 0.99167 0.94275 0.97084 0.89370 1.23413 1.02672 0.93763 0.97835 1.22032 0.84006 0.96284 0.96804 0.87991 1.45819 1.23714 1.43006 1.22754 1.19542 0.84444 0.79315 0.85330 1.90697 1.71298 1.57459 1.19564 1.22877 0.94041 0.95017 1.01770 1.20129 0.80621 0.83647 0.74637 1.93187 1.50473 1.87949 1.83842 1.93169 1.81712 1.69549 1.71200 1.93250 1.93281 1.83508 1.45294 1.22286 1.01202 0.92854 0.98820 1.22364 0.99154 0.96714 0.97604 1.22536 0.99676 0.94406 0.99095 1.22607 1.03824 0.95853 0.93015 1.23312 0.98831 0.96611 0.98760 0.93554 0.78307 0.96402 0.96194 0.88875 0.91233 0.75767 0.87444 0.90277 0.90915 0.90509 0.90204 0.90671 0.89599 0.89067 0.91212 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.84 5.60 -59.90 -0.34 -19.17 16 10 C 0.16 3.26 6.10 -4.04 -0.02 3.23 16 11 C -0.11 -1.78 3.63 -89.80 -0.33 -2.11 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 13 C -0.14 -2.08 7.43 -25.92 -0.19 -2.27 16 14 C 0.11 1.41 4.32 -67.12 -0.29 1.12 16 15 H 0.10 1.29 7.46 -51.93 -0.39 0.91 16 16 N -0.70 -8.12 4.65 -53.03 -0.25 -8.37 16 17 C 0.53 6.43 6.22 -10.99 -0.07 6.37 16 18 O -0.52 -7.68 14.81 5.56 0.08 -7.60 16 19 C -0.13 -1.27 0.38 -154.54 -0.06 -1.33 16 20 C 0.46 5.09 2.04 37.16 0.08 5.17 16 21 F -0.17 -1.76 16.07 2.25 0.04 -1.72 16 22 F -0.17 -2.03 14.82 2.25 0.03 -2.00 16 23 F -0.17 -2.25 16.66 2.25 0.04 -2.21 16 24 C -0.11 -0.99 5.69 -25.62 -0.15 -1.14 16 25 C -0.12 -0.76 6.82 -25.07 -0.17 -0.93 16 26 C -0.12 -0.72 6.93 -24.58 -0.17 -0.89 16 27 C -0.12 -0.81 5.63 -24.91 -0.14 -0.95 16 28 C -0.14 -1.61 7.39 -25.92 -0.19 -1.80 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 33 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.41 4.26 6.68 -40.82 -0.27 3.99 16 36 H 0.11 1.10 6.39 -51.93 -0.33 0.77 16 37 H 0.08 0.66 7.32 -51.93 -0.38 0.28 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.56 7.50 -51.93 -0.39 0.18 16 43 H 0.09 0.57 7.25 -51.93 -0.38 0.19 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -32.63 370.01 -7.68 -40.32 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.62 Total: 8.52 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.95 Total: -3.03 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.14 Total: -55.57 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.08 Total: -7.60 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.93 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.63 -7.68 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755484011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.582 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds