Wall clock time and date at job start Tue Mar 31 2020 22:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00300 * 3 2 1 5 5 H 1.48503 * 109.47177 * 29.99774 * 3 2 1 6 6 H 1.48494 * 109.47429 * 150.00197 * 3 2 1 7 7 C 1.38815 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99536 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.46512 * 119.99888 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46609 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.85355 * 316.19424 * 11 10 9 13 13 C 1.53782 * 113.61564 * 87.50805 * 11 10 9 14 14 C 1.53775 * 87.08307 * 139.97496 * 13 11 10 15 15 H 1.09000 * 113.68650 * 220.00734 * 14 13 11 16 16 N 1.46493 * 113.61520 * 89.11973 * 14 13 11 17 17 C 1.34775 * 120.00645 * 107.49758 * 16 14 13 18 18 O 1.21282 * 119.99652 * 0.02562 * 17 16 14 19 19 C 1.50693 * 120.00583 * 179.97438 * 17 16 14 20 20 C 1.53007 * 110.05264 * 58.58396 * 19 17 16 21 21 F 1.39899 * 109.47334 * 181.41518 * 20 19 17 22 22 F 1.39901 * 109.47183 * 301.42055 * 20 19 17 23 23 F 1.39905 * 109.46502 * 61.41972 * 20 19 17 24 24 C 1.53869 * 110.03789 * 180.02562 * 19 17 16 25 25 C 1.54266 * 106.60031 * 119.28673 * 24 19 17 26 26 C 1.54894 * 104.31305 * 336.32486 * 25 24 19 27 27 C 1.54266 * 110.03451 * 297.17247 * 19 17 16 28 28 C 1.53784 * 87.08165 * 334.56528 * 14 13 11 29 29 H 0.96998 * 119.99648 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00173 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46486 * 59.99993 * 10 9 7 32 32 H 1.08996 * 109.46791 * 299.99650 * 10 9 7 33 33 H 1.09004 * 113.61447 * 25.42025 * 13 11 10 34 34 H 1.08997 * 113.61207 * 254.52796 * 13 11 10 35 35 H 0.97001 * 119.99727 * 287.49721 * 16 14 13 36 36 H 1.09001 * 110.02983 * 0.02562 * 24 19 17 37 37 H 1.08996 * 110.07773 * 238.59568 * 24 19 17 38 38 H 1.09002 * 110.48629 * 95.07240 * 25 24 19 39 39 H 1.08998 * 110.48744 * 217.58143 * 25 24 19 40 40 H 1.08996 * 110.75388 * 156.31523 * 26 25 24 41 41 H 1.08993 * 110.76071 * 279.69749 * 26 25 24 42 42 H 1.09005 * 110.48526 * 23.00238 * 27 19 17 43 43 H 1.09006 * 110.48581 * 145.64431 * 27 19 17 44 44 H 1.09002 * 113.61112 * 139.97948 * 28 14 13 45 45 H 1.08994 * 113.61420 * 270.79867 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.2379 -4.6702 0.6957 13 6 0.6162 -5.2484 -1.4073 14 6 0.7044 -6.7000 -0.9077 15 1 1.1223 -7.3907 -1.6402 16 7 -0.5388 -7.1907 -0.3078 17 6 -1.2960 -8.0901 -0.9668 18 8 -0.9479 -8.4936 -2.0562 19 6 -2.5745 -8.5953 -0.3494 20 6 -3.5200 -7.4253 -0.0695 21 9 -4.6886 -7.9038 0.5324 22 9 -2.8934 -6.5141 0.7874 23 9 -3.8423 -6.7882 -1.2727 24 6 -3.2511 -9.6066 -1.2913 25 6 -3.3308 -10.9409 -0.5212 26 6 -2.2018 -10.8418 0.5346 27 6 -2.2667 -9.3508 0.9598 28 6 1.7304 -6.2001 0.1230 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.6847 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 1.3398 -5.0102 -2.1870 34 1 -0.3967 -4.9337 -1.6582 35 1 -0.8170 -6.8683 0.5637 36 1 -2.6544 -9.7324 -2.1948 37 1 -4.2530 -9.2645 -1.5502 38 1 -4.3007 -11.0430 -0.0343 39 1 -3.1521 -11.7804 -1.1931 40 1 -2.4063 -11.4969 1.3814 41 1 -1.2347 -11.0748 0.0892 42 1 -1.3090 -9.0296 1.3696 43 1 -3.0647 -9.1961 1.6862 44 1 1.6168 -6.6537 1.1076 45 1 2.7586 -6.2235 -0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755484011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:13 Heat of formation + Delta-G solvation = -187.919592 kcal Electronic energy + Delta-G solvation = -30424.882787 eV Core-core repulsion = 25833.849418 eV Total energy + Delta-G solvation = -4591.033368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -51.37541 -48.86647 -48.80340 -41.80051 -40.11382 -38.15099 -36.37543 -34.65633 -32.89242 -31.60463 -29.87889 -28.50297 -26.66649 -26.03262 -25.37747 -23.90730 -22.85368 -21.90140 -21.14582 -20.38739 -19.82863 -19.41550 -19.18394 -19.05322 -17.59143 -17.31096 -16.73718 -16.35118 -16.05527 -15.79922 -15.72044 -15.58828 -15.52882 -15.31522 -15.21312 -15.08806 -14.99805 -14.85840 -14.51959 -14.40798 -14.19390 -13.75717 -13.41810 -13.13808 -12.95348 -12.93227 -12.72826 -12.52320 -12.28276 -12.18885 -12.15565 -12.06919 -11.93674 -11.79680 -11.54484 -11.40059 -11.17670 -11.10311 -10.87239 -10.19213 -8.98835 -7.95509 -5.24149 0.96572 1.45983 1.48145 1.56575 1.66823 1.74864 2.52742 2.55546 2.65498 2.84068 3.37045 3.37503 3.38770 3.51448 3.55380 3.58912 3.89964 3.91380 4.09660 4.16807 4.27019 4.31317 4.37415 4.51918 4.63150 4.70435 4.72652 4.82032 4.83756 4.88959 4.91639 4.96461 4.99623 5.11829 5.13249 5.16688 5.23262 5.30537 5.39714 5.47806 5.60520 6.25257 6.27142 6.89851 7.32643 8.10828 8.32715 9.28238 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002777 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.856751 B =10081.292700 C =10840.203483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.115 4.115 12 H 0.080 0.920 13 C -0.145 4.145 14 C 0.124 3.876 15 H 0.105 0.895 16 N -0.697 5.697 17 C 0.528 3.472 18 O -0.546 6.546 19 C -0.126 4.126 20 C 0.461 3.539 21 F -0.166 7.166 22 F -0.180 7.180 23 F -0.189 7.189 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.115 4.115 28 C -0.113 4.113 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -27.458 3.184 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.134 4.134 12 H 0.098 0.902 13 C -0.183 4.183 14 C 0.019 3.981 15 H 0.123 0.877 16 N -0.349 5.349 17 C 0.313 3.687 18 O -0.423 6.423 19 C -0.131 4.131 20 C 0.406 3.594 21 F -0.147 7.147 22 F -0.161 7.161 23 F -0.171 7.171 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.152 4.152 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.250 0.750 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.743 -27.611 2.426 28.306 hybrid contribution -0.549 2.110 0.112 2.183 sum -6.291 -25.500 2.538 26.387 Atomic orbital electron populations 1.69832 1.06696 1.26018 1.59691 1.25605 0.96415 1.01240 1.03851 0.85121 0.77756 0.79378 0.77409 1.21504 1.22185 1.19211 1.19673 0.91539 0.85480 1.40961 0.90569 1.42613 1.05575 1.01400 1.89324 1.20827 0.93678 0.84378 0.97648 1.22705 0.98557 0.94786 0.97314 0.90190 1.23438 1.01179 0.96097 0.97608 1.21878 0.84597 0.94531 0.97078 0.87694 1.45823 1.23493 1.42695 1.22917 1.19955 0.85007 0.78842 0.84882 1.90684 1.72253 1.58532 1.20849 1.22925 0.92274 0.94575 1.03348 1.20378 0.81122 0.83815 0.74059 1.93196 1.50149 1.87777 1.83622 1.93156 1.81805 1.69912 1.71270 1.93216 1.93474 1.83965 1.46398 1.22323 1.00618 0.94145 0.98378 1.22386 1.00059 0.95311 0.97625 1.22553 0.99194 0.93883 0.99661 1.22730 1.04635 0.96169 0.91687 1.23228 0.99020 0.92986 0.99856 0.94079 0.79699 0.95865 0.95942 0.89110 0.93627 0.75029 0.89264 0.90315 0.89609 0.89697 0.87964 0.91322 0.88910 0.87834 0.88799 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.92 29.55 68.60 2.03 48.94 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.24 -13.94 9.99 84.04 0.84 -13.10 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -38.80 5.60 -343.44 -1.92 -40.72 16 10 C 0.16 6.32 6.10 86.38 0.53 6.84 16 11 C -0.11 -3.50 3.63 -10.27 -0.04 -3.54 16 12 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 13 C -0.14 -4.37 7.43 31.12 0.23 -4.14 16 14 C 0.12 2.94 4.32 45.52 0.20 3.14 16 15 H 0.11 2.52 7.46 -2.39 -0.02 2.50 16 16 N -0.70 -15.51 4.65 -440.07 -2.05 -17.56 16 17 C 0.53 12.56 6.22 87.66 0.55 13.11 16 18 O -0.55 -16.31 14.81 -3.04 -0.04 -16.35 16 19 C -0.13 -2.31 0.38 -52.21 -0.02 -2.33 16 20 C 0.46 9.90 2.04 71.98 0.15 10.05 16 21 F -0.17 -3.18 16.07 44.97 0.72 -2.46 16 22 F -0.18 -4.10 14.82 44.97 0.67 -3.43 16 23 F -0.19 -5.05 16.66 44.97 0.75 -4.30 16 24 C -0.12 -1.95 5.69 31.32 0.18 -1.77 16 25 C -0.12 -1.22 6.82 31.67 0.22 -1.00 16 26 C -0.12 -1.09 6.93 31.99 0.22 -0.87 16 27 C -0.11 -1.36 5.63 31.77 0.18 -1.18 16 28 C -0.11 -2.37 7.39 31.12 0.23 -2.14 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.37 20.74 7.67 -92.71 -0.71 20.03 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.02 0.88 7.84 -2.39 -0.02 0.87 16 33 H 0.09 2.76 7.90 -2.38 -0.02 2.74 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 8.15 6.68 -92.71 -0.62 7.54 16 36 H 0.09 1.85 6.39 -2.39 -0.02 1.83 16 37 H 0.08 1.29 7.32 -2.39 -0.02 1.27 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.99 7.50 -2.38 -0.02 0.97 16 43 H 0.10 1.01 7.25 -2.38 -0.02 0.99 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -70.96 370.01 4.05 -66.91 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.30 Total: 30.78 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 3.92 Total: -1.12 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -3.69 Total: -118.96 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.35 kcal Atomic # 9 Polarization: -12.34 SS G_CDS: 2.14 Total: -10.20 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -70.96 4.05 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755484011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.014 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds