Wall clock time and date at job start Tue Mar 31 2020 21:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00264 * 3 2 1 5 5 H 1.48494 * 109.47249 * 30.00304 * 3 2 1 6 6 H 1.48498 * 109.46738 * 150.00188 * 3 2 1 7 7 C 1.38810 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99930 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99952 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47469 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47223 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.46624 * 180.02562 * 12 11 10 14 14 C 1.42901 * 113.99560 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46885 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47327 * 64.99973 * 15 14 13 17 17 C 1.34785 * 120.00297 * 179.97438 * 16 15 14 18 18 O 1.21278 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.99898 * 180.02562 * 17 16 15 20 20 H 1.09004 * 110.66434 * 301.78123 * 19 17 16 21 21 C 1.54705 * 110.75260 * 64.99935 * 19 17 16 22 22 C 1.51646 * 101.90713 * 92.97057 * 21 19 17 23 23 C 1.37740 * 132.17837 * 195.95093 * 22 21 19 24 24 C 1.38352 * 119.97764 * 179.86683 * 23 22 21 25 25 C 1.38287 * 119.76476 * 359.53506 * 24 23 22 26 26 C 1.37930 * 120.35433 * 0.36923 * 25 24 23 27 27 C 1.38880 * 107.02971 * 15.67861 * 22 21 19 28 28 O 1.36127 * 111.25829 * 0.63889 * 27 22 21 29 29 H 0.97008 * 120.00068 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00061 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47546 * 60.00395 * 10 9 7 32 32 H 1.08999 * 109.47231 * 299.99833 * 10 9 7 33 33 H 1.09002 * 109.46424 * 59.99695 * 11 10 9 34 34 H 1.08996 * 109.46937 * 300.00605 * 11 10 9 35 35 H 1.08994 * 109.46973 * 60.00262 * 12 11 10 36 36 H 1.08999 * 109.47541 * 299.99859 * 12 11 10 37 37 H 1.08997 * 109.47105 * 60.00614 * 14 13 12 38 38 H 1.09001 * 109.47334 * 300.00244 * 14 13 12 39 39 H 1.09006 * 109.47250 * 305.00212 * 15 14 13 40 40 H 1.08999 * 109.47107 * 185.00088 * 15 14 13 41 41 H 0.96997 * 120.00343 * 0.02562 * 16 15 14 42 42 H 1.09003 * 110.94409 * 334.82030 * 21 19 17 43 43 H 1.08997 * 110.94665 * 211.12749 * 21 19 17 44 44 H 1.07998 * 120.01194 * 359.72093 * 23 22 21 45 45 H 1.08001 * 120.12085 * 179.75845 * 24 23 22 46 46 H 1.07998 * 119.82309 * 180.38801 * 25 24 23 47 47 H 1.08001 * 119.88343 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1913 -0.0020 12 6 6.3813 -3.5163 -0.0025 13 8 7.7863 -3.2551 -0.0017 14 6 8.5962 -4.4324 -0.0027 15 6 10.0737 -4.0349 -0.0010 16 7 10.3927 -3.3461 1.2519 17 6 11.6453 -2.9021 1.4769 18 8 12.5083 -3.0732 0.6423 19 6 11.9734 -2.1940 2.7661 20 1 11.3447 -1.3125 2.8916 21 6 11.8215 -3.1517 3.9715 22 6 13.2309 -3.6908 4.1224 23 6 13.7379 -4.7772 4.8005 24 6 15.0953 -5.0424 4.7650 25 6 15.9368 -4.2192 4.0394 26 6 15.4311 -3.1318 3.3581 27 6 14.0668 -2.8531 3.3954 28 8 13.3665 -1.8414 2.8131 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 3.8485 -3.0418 -0.8925 32 1 3.8491 -3.0430 0.8875 33 1 5.8796 -1.6205 0.8886 34 1 5.8797 -1.6189 -0.8913 35 1 6.1181 -4.0874 -0.8927 36 1 6.1180 -4.0883 0.8872 37 1 8.3793 -5.0219 -0.8934 38 1 8.3785 -5.0241 0.8866 39 1 10.2721 -3.3701 -0.8418 40 1 10.6906 -4.9290 -0.0913 41 1 9.7027 -3.2102 1.9200 42 1 11.1196 -3.9544 3.7454 43 1 11.5146 -2.6080 4.8649 44 1 13.0763 -5.4206 5.3617 45 1 15.4958 -5.8915 5.2990 46 1 16.9957 -4.4290 4.0059 47 1 16.0952 -2.4942 2.7935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755554037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:39 Heat of formation + Delta-G solvation = -73.805939 kcal Electronic energy + Delta-G solvation = -27196.293621 eV Core-core repulsion = 23152.065333 eV Total energy + Delta-G solvation = -4044.228289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 24.73 seconds Orbital eigenvalues (eV) -41.92561 -39.65646 -38.35310 -37.62944 -35.67269 -34.95162 -33.30500 -32.38913 -30.90445 -30.46638 -30.12328 -28.88214 -25.43489 -24.96001 -23.08775 -22.63137 -22.23823 -22.05615 -21.05594 -21.02271 -18.47913 -17.58639 -17.44497 -17.40974 -16.97328 -16.56609 -16.20750 -15.80086 -15.51358 -15.14316 -14.67010 -14.55441 -14.27598 -14.06667 -13.82415 -13.78554 -13.66286 -13.59117 -13.24786 -12.97774 -12.74088 -12.38835 -12.25408 -12.09862 -12.05415 -11.97079 -11.66324 -11.24907 -11.06508 -10.97391 -10.76622 -10.73360 -10.22385 -10.16152 -9.78513 -9.62431 -9.49917 -9.31610 -8.92901 -8.55828 -7.27334 -5.79752 -3.15949 0.84817 0.95898 2.11757 2.45976 2.91488 3.32094 3.36080 3.37364 3.39650 3.44409 3.86281 3.94633 4.19413 4.39584 4.53529 4.57052 4.63022 4.68820 4.75513 4.77967 4.96979 4.99329 5.03179 5.09823 5.12267 5.16447 5.19483 5.24571 5.39842 5.49212 5.50354 5.57575 5.70443 5.88846 5.90013 5.90297 5.95546 5.97785 6.05653 6.14318 6.15402 6.64255 6.68988 6.72044 6.99756 7.03607 7.76145 7.95818 8.39118 9.17940 9.90338 10.09915 11.38436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.001677 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.970103 B =16687.975031 C =17166.807331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.160 3.840 11 C -0.129 4.129 12 C 0.068 3.932 13 O -0.388 6.388 14 C 0.049 3.951 15 C 0.123 3.877 16 N -0.718 5.718 17 C 0.498 3.502 18 O -0.521 6.521 19 C 0.063 3.937 20 H 0.146 0.854 21 C -0.099 4.099 22 C -0.178 4.178 23 C -0.069 4.069 24 C -0.149 4.149 25 C -0.085 4.085 26 C -0.132 4.132 27 C 0.111 3.889 28 O -0.273 6.273 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.406 0.594 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.698 -12.586 9.855 35.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.166 4.166 12 C -0.009 4.009 13 O -0.308 6.308 14 C -0.029 4.029 15 C 0.000 4.000 16 N -0.373 5.373 17 C 0.282 3.718 18 O -0.396 6.396 19 C 0.003 3.997 20 H 0.163 0.837 21 C -0.136 4.136 22 C -0.178 4.178 23 C -0.087 4.087 24 C -0.168 4.168 25 C -0.103 4.103 26 C -0.151 4.151 27 C 0.066 3.934 28 O -0.185 6.185 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.241 0.759 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 32.234 -12.392 9.132 35.720 hybrid contribution -0.154 0.958 0.260 1.005 sum 32.079 -11.434 9.392 35.328 Atomic orbital electron populations 1.69706 1.05109 1.25895 1.57409 1.24682 0.95269 0.97286 1.01887 0.86526 0.79196 0.84822 0.77861 1.21001 1.21653 1.20299 1.19057 0.80552 0.94810 1.43308 0.89191 1.42678 1.04090 1.02182 1.91239 1.20487 0.87895 0.89595 0.98719 1.21717 0.95601 0.96119 1.03210 1.22491 0.79601 0.98393 1.00399 1.87915 1.17363 1.29979 1.95504 1.22716 0.89894 0.88666 1.01578 1.21433 0.93688 0.97908 0.86984 1.45845 1.10902 1.59441 1.21069 1.20832 0.82773 0.79355 0.88817 1.90752 1.47029 1.55646 1.46192 1.23338 0.83280 1.00122 0.92928 0.83660 1.21783 0.95207 0.98757 0.97841 1.20711 0.95195 0.99082 1.02848 1.20300 0.95424 0.95241 0.97701 1.21055 0.93062 1.00910 1.01730 1.20910 1.00056 0.93595 0.95714 1.20309 0.91894 0.99564 1.03341 1.19589 0.93292 0.88010 0.92508 1.86951 1.17753 1.36580 1.77206 0.93011 0.80562 0.95427 0.95502 0.91250 0.91178 0.92976 0.93058 0.91362 0.92546 0.90257 0.89908 0.75884 0.88488 0.87575 0.85652 0.85367 0.85045 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.13 27.74 -169.99 -4.71 17.41 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -18.03 5.41 -59.91 -0.32 -18.35 16 10 C 0.16 2.99 6.26 -4.04 -0.03 2.97 16 11 C -0.13 -1.89 5.70 -26.73 -0.15 -2.04 16 12 C 0.07 0.77 5.94 37.16 0.22 0.99 16 13 O -0.39 -4.23 10.29 -35.23 -0.36 -4.60 16 14 C 0.05 0.37 6.07 37.16 0.23 0.60 16 15 C 0.12 1.02 6.06 -4.04 -0.02 1.00 16 16 N -0.72 -5.84 5.34 -60.30 -0.32 -6.16 16 17 C 0.50 5.24 7.07 -10.98 -0.08 5.16 16 18 O -0.52 -7.79 16.53 -13.50 -0.22 -8.01 16 19 C 0.06 0.53 4.11 -26.99 -0.11 0.42 16 20 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -0.61 6.64 -26.52 -0.18 -0.79 16 22 C -0.18 -1.54 6.26 -104.10 -0.65 -2.19 16 23 C -0.07 -0.50 10.03 -39.72 -0.40 -0.90 16 24 C -0.15 -1.00 10.07 -39.52 -0.40 -1.40 16 25 C -0.08 -0.61 10.02 -39.68 -0.40 -1.01 16 26 C -0.13 -1.23 10.06 -39.30 -0.40 -1.62 16 27 C 0.11 1.18 6.91 -38.95 -0.27 0.91 16 28 O -0.27 -3.11 10.41 -39.21 -0.41 -3.52 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.36 8.42 5.53 -40.82 -0.23 8.19 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.41 2.43 8.47 -40.82 -0.35 2.09 16 42 H 0.10 0.46 7.78 -51.93 -0.40 0.06 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -36.91 395.67 -9.83 -46.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.33 Total: 4.11 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.88 Total: -5.06 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.13 Total: -53.04 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.99 Total: -16.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.91 -9.83 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755554037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.063 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.73 seconds