Wall clock time and date at job start Tue Mar 31 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00264 * 3 2 1 5 5 H 1.48494 * 109.47249 * 30.00304 * 3 2 1 6 6 H 1.48498 * 109.46738 * 150.00188 * 3 2 1 7 7 C 1.38810 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99930 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99952 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47469 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47223 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.46624 * 180.02562 * 12 11 10 14 14 C 1.42901 * 113.99560 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46885 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47327 * 64.99973 * 15 14 13 17 17 C 1.34785 * 120.00297 * 179.97438 * 16 15 14 18 18 O 1.21278 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.99898 * 180.02562 * 17 16 15 20 20 H 1.09004 * 110.66434 * 301.78123 * 19 17 16 21 21 C 1.54705 * 110.75260 * 64.99935 * 19 17 16 22 22 C 1.51646 * 101.90713 * 92.97057 * 21 19 17 23 23 C 1.37740 * 132.17837 * 195.95093 * 22 21 19 24 24 C 1.38352 * 119.97764 * 179.86683 * 23 22 21 25 25 C 1.38287 * 119.76476 * 359.53506 * 24 23 22 26 26 C 1.37930 * 120.35433 * 0.36923 * 25 24 23 27 27 C 1.38880 * 107.02971 * 15.67861 * 22 21 19 28 28 O 1.36127 * 111.25829 * 0.63889 * 27 22 21 29 29 H 0.97008 * 120.00068 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00061 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47546 * 60.00395 * 10 9 7 32 32 H 1.08999 * 109.47231 * 299.99833 * 10 9 7 33 33 H 1.09002 * 109.46424 * 59.99695 * 11 10 9 34 34 H 1.08996 * 109.46937 * 300.00605 * 11 10 9 35 35 H 1.08994 * 109.46973 * 60.00262 * 12 11 10 36 36 H 1.08999 * 109.47541 * 299.99859 * 12 11 10 37 37 H 1.08997 * 109.47105 * 60.00614 * 14 13 12 38 38 H 1.09001 * 109.47334 * 300.00244 * 14 13 12 39 39 H 1.09006 * 109.47250 * 305.00212 * 15 14 13 40 40 H 1.08999 * 109.47107 * 185.00088 * 15 14 13 41 41 H 0.96997 * 120.00343 * 0.02562 * 16 15 14 42 42 H 1.09003 * 110.94409 * 334.82030 * 21 19 17 43 43 H 1.08997 * 110.94665 * 211.12749 * 21 19 17 44 44 H 1.07998 * 120.01194 * 359.72093 * 23 22 21 45 45 H 1.08001 * 120.12085 * 179.75845 * 24 23 22 46 46 H 1.07998 * 119.82309 * 180.38801 * 25 24 23 47 47 H 1.08001 * 119.88343 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1913 -0.0020 12 6 6.3813 -3.5163 -0.0025 13 8 7.7863 -3.2551 -0.0017 14 6 8.5962 -4.4324 -0.0027 15 6 10.0737 -4.0349 -0.0010 16 7 10.3927 -3.3461 1.2519 17 6 11.6453 -2.9021 1.4769 18 8 12.5083 -3.0732 0.6423 19 6 11.9734 -2.1940 2.7661 20 1 11.3447 -1.3125 2.8916 21 6 11.8215 -3.1517 3.9715 22 6 13.2309 -3.6908 4.1224 23 6 13.7379 -4.7772 4.8005 24 6 15.0953 -5.0424 4.7650 25 6 15.9368 -4.2192 4.0394 26 6 15.4311 -3.1318 3.3581 27 6 14.0668 -2.8531 3.3954 28 8 13.3665 -1.8414 2.8131 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0007 31 1 3.8485 -3.0418 -0.8925 32 1 3.8491 -3.0430 0.8875 33 1 5.8796 -1.6205 0.8886 34 1 5.8797 -1.6189 -0.8913 35 1 6.1181 -4.0874 -0.8927 36 1 6.1180 -4.0883 0.8872 37 1 8.3793 -5.0219 -0.8934 38 1 8.3785 -5.0241 0.8866 39 1 10.2721 -3.3701 -0.8418 40 1 10.6906 -4.9290 -0.0913 41 1 9.7027 -3.2102 1.9200 42 1 11.1196 -3.9544 3.7454 43 1 11.5146 -2.6080 4.8649 44 1 13.0763 -5.4206 5.3617 45 1 15.4958 -5.8915 5.2990 46 1 16.9957 -4.4290 4.0059 47 1 16.0952 -2.4942 2.7935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755554037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:18 Heat of formation + Delta-G solvation = -99.674568 kcal Electronic energy + Delta-G solvation = -27197.415369 eV Core-core repulsion = 23152.065333 eV Total energy + Delta-G solvation = -4045.350037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.61 seconds Orbital eigenvalues (eV) -42.55730 -40.40190 -39.15864 -38.25555 -37.19150 -35.94066 -34.23942 -33.80749 -32.23398 -31.14690 -31.02991 -29.61338 -26.88649 -25.64677 -23.95352 -23.68699 -23.25439 -22.61459 -22.43904 -21.75448 -19.65208 -19.12820 -18.10834 -18.03952 -17.79092 -17.30334 -16.82438 -16.67955 -16.55944 -16.19180 -15.91075 -15.54072 -15.37547 -15.16880 -14.94283 -14.69148 -14.52507 -14.27524 -14.20220 -13.94424 -13.63562 -13.59177 -13.37294 -12.87615 -12.80458 -12.71989 -12.67952 -12.58355 -12.31551 -12.13203 -11.97810 -11.91749 -11.80592 -11.78889 -11.01988 -10.98222 -10.54214 -10.24508 -9.87234 -9.31792 -9.16897 -8.04192 -5.38373 0.29091 0.36901 1.36452 1.38370 1.41537 1.48993 1.82914 2.28735 2.47765 2.56534 2.76065 3.27430 3.33179 3.42212 3.58034 3.68332 3.88273 3.93855 4.09701 4.13704 4.18000 4.21306 4.28386 4.33675 4.34789 4.49147 4.52154 4.57748 4.59478 4.66082 4.72209 4.73349 4.75547 4.81511 4.87027 5.05779 5.27858 5.30665 5.32562 5.34018 5.40318 5.52008 5.60533 5.74081 6.13359 6.19174 6.24050 6.38614 7.05687 7.06486 7.82791 8.01064 9.17001 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.001677 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.970103 B =16687.975031 C =17166.807331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.240 4.240 8 H 0.058 0.942 9 N -0.762 5.762 10 C 0.156 3.844 11 C -0.118 4.118 12 C 0.076 3.924 13 O -0.405 6.405 14 C 0.052 3.948 15 C 0.123 3.877 16 N -0.704 5.704 17 C 0.495 3.505 18 O -0.575 6.575 19 C 0.058 3.942 20 H 0.172 0.828 21 C -0.089 4.089 22 C -0.188 4.188 23 C -0.076 4.076 24 C -0.149 4.149 25 C -0.090 4.090 26 C -0.157 4.157 27 C 0.073 3.927 28 O -0.302 6.302 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.028 0.972 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.419 0.581 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.025 -13.552 11.376 37.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.175 1.175 7 C -0.371 4.371 8 H 0.076 0.924 9 N -0.408 5.408 10 C 0.030 3.970 11 C -0.156 4.156 12 C -0.001 4.001 13 O -0.325 6.325 14 C -0.025 4.025 15 C -0.001 4.001 16 N -0.358 5.358 17 C 0.281 3.719 18 O -0.455 6.455 19 C -0.001 4.001 20 H 0.189 0.811 21 C -0.126 4.126 22 C -0.189 4.189 23 C -0.093 4.093 24 C -0.167 4.167 25 C -0.107 4.107 26 C -0.176 4.176 27 C 0.029 3.971 28 O -0.215 6.215 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.257 0.743 42 H 0.133 0.867 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.173 0.827 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 33.579 -13.397 10.675 37.696 hybrid contribution -0.546 1.111 -0.224 1.258 sum 33.033 -12.286 10.452 36.761 Atomic orbital electron populations 1.69887 1.07134 1.26778 1.59484 1.25539 0.96167 1.01379 1.02450 0.85389 0.78708 0.79453 0.78122 1.20533 1.22070 1.17486 1.19067 0.82714 0.93630 1.41669 0.92350 1.42731 1.02582 1.04355 1.91093 1.20668 0.90195 0.87471 0.98712 1.21529 0.93003 0.98095 1.02950 1.22315 0.79748 0.96356 1.01697 1.87869 1.17105 1.31759 1.95741 1.22836 0.88430 0.87836 1.03388 1.21433 0.94575 0.97683 0.86364 1.45791 1.10514 1.58354 1.21191 1.21333 0.82717 0.78802 0.89069 1.90721 1.48681 1.57969 1.48087 1.23616 0.82475 1.01492 0.92502 0.81141 1.21860 0.94288 0.98836 0.97602 1.21082 0.96156 0.99103 1.02541 1.20695 0.96177 0.95026 0.97448 1.21477 0.93010 1.01224 1.01003 1.21243 1.01488 0.92850 0.95151 1.20589 0.91970 1.00680 1.04346 1.19972 0.94148 0.88970 0.94035 1.86894 1.19268 1.37576 1.77754 0.93268 0.80074 0.95437 0.95010 0.91116 0.91849 0.92209 0.91299 0.90046 0.90164 0.92368 0.89235 0.74345 0.86720 0.85238 0.83125 0.82625 0.82746 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.96 45.27 27.74 68.60 1.90 47.17 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 7 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.76 -35.26 5.41 -343.46 -1.86 -37.12 16 10 C 0.16 5.52 6.26 86.38 0.54 6.06 16 11 C -0.12 -3.16 5.70 30.59 0.17 -2.98 16 12 C 0.08 1.47 5.94 71.98 0.43 1.90 16 13 O -0.40 -7.60 10.29 -148.98 -1.53 -9.13 16 14 C 0.05 0.63 6.07 71.98 0.44 1.06 16 15 C 0.12 1.86 6.06 86.38 0.52 2.38 16 16 N -0.70 -10.24 5.34 -463.06 -2.47 -12.71 16 17 C 0.49 10.21 7.07 87.65 0.62 10.83 16 18 O -0.58 -17.81 16.53 15.21 0.25 -17.56 16 19 C 0.06 0.92 4.11 30.43 0.13 1.05 16 20 H 0.17 1.62 8.14 -2.38 -0.02 1.60 16 21 C -0.09 -0.91 6.64 30.73 0.20 -0.71 16 22 C -0.19 -3.03 6.26 -19.53 -0.12 -3.15 16 23 C -0.08 -0.94 10.03 22.18 0.22 -0.72 16 24 C -0.15 -1.71 10.07 22.31 0.22 -1.48 16 25 C -0.09 -1.22 10.02 22.21 0.22 -1.00 16 26 C -0.16 -3.04 10.06 22.45 0.23 -2.82 16 27 C 0.07 1.59 6.91 22.68 0.16 1.75 16 28 O -0.30 -7.13 10.41 -76.77 -0.80 -7.93 16 29 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 30 H 0.37 16.17 5.53 -92.71 -0.51 15.66 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.42 3.83 8.47 -92.71 -0.79 3.05 16 42 H 0.11 0.73 7.78 -2.39 -0.02 0.71 16 43 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 46 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -82.86 395.67 0.75 -82.11 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.38 Total: 21.62 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.33 Total: -3.93 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.03 Total: -112.36 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.08 Total: -34.62 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Total: -82.86 0.75 -82.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755554037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.561 kcal (2) G-P(sol) polarization free energy of solvation -82.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.61 seconds