Wall clock time and date at job start Tue Mar 31 2020 19:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 5 5 C 1.46903 * 111.00131 * 275.00245 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00248 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99357 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46811 * 90.00524 * 17 15 13 19 19 H 1.48502 * 109.46643 * 209.99901 * 17 15 13 20 20 H 1.48499 * 109.47300 * 329.99977 * 17 15 13 21 21 C 1.50698 * 109.47276 * 239.99828 * 2 1 3 22 22 N 1.29950 * 126.28892 * 285.03103 * 21 2 1 23 23 O 1.21300 * 110.24851 * 179.97438 * 22 21 2 24 24 C 1.33641 * 109.81329 * 359.97438 * 23 22 21 25 25 C 1.50707 * 126.54785 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47139 * 119.97570 * 25 24 23 27 27 F 1.39899 * 109.46810 * 239.97383 * 25 24 23 28 28 N 1.31124 * 106.89871 * 359.76718 * 24 23 22 29 29 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 32 32 H 1.00904 * 111.00509 * 151.04084 * 4 2 1 33 33 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 34 34 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 35 35 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 36 36 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 37 37 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 38 38 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 39 39 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 40 40 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 41 41 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 42 42 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 43 43 H 0.96999 * 119.99895 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.47063 * 359.97147 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3470 6 6 2.5961 -0.5330 3.5742 7 1 3.5915 -0.9264 3.3683 8 8 1.7097 -1.6130 3.8741 9 6 2.6620 0.4203 4.7692 10 7 3.2668 -0.2721 5.9149 11 6 4.6744 -0.5982 5.6499 12 6 3.1330 0.5246 7.1419 13 6 3.5374 -0.3102 8.3296 14 1 3.8618 -1.3305 8.1871 15 6 3.4932 0.2284 9.5980 16 7 3.8466 -0.5000 10.6344 17 14 2.9328 1.9933 9.8442 18 1 1.4624 2.0215 10.0501 19 1 3.6104 2.5662 11.0350 20 1 3.2801 2.7950 8.6435 21 6 2.0323 -0.7104 -1.2304 22 7 2.0326 -1.9944 -1.4310 23 8 2.5027 -2.2491 -2.5198 24 6 2.8572 -1.1175 -3.1361 25 6 3.4778 -0.9972 -4.5042 26 9 2.6455 -0.2320 -5.3281 27 9 4.7265 -0.3757 -4.3966 28 7 2.5567 -0.1317 -2.3254 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1207 1.0287 33 1 1.0870 0.6162 2.5525 34 1 2.7588 1.0461 2.1182 35 1 0.8037 -1.3361 4.0681 36 1 1.6550 0.7448 5.0310 37 1 3.2673 1.2884 4.5084 38 1 5.0780 -1.1714 6.4846 39 1 5.2449 0.3232 5.5323 40 1 4.7449 -1.1883 4.7361 41 1 3.7773 1.4014 7.0778 42 1 2.0968 0.8428 7.2573 43 1 3.8152 -0.1212 11.5268 44 1 3.6022 -1.9905 -4.9353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772053929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:12 Heat of formation + Delta-G solvation = -58.939818 kcal Electronic energy + Delta-G solvation = -28335.310920 eV Core-core repulsion = 23769.790496 eV Total energy + Delta-G solvation = -4565.520424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93558 -47.95569 -46.38154 -38.75149 -37.49874 -36.08549 -35.31857 -33.48283 -32.47758 -31.26580 -29.25478 -28.39906 -27.64069 -26.26549 -25.24941 -23.92775 -23.31120 -21.36404 -21.26232 -20.13668 -19.10316 -18.94782 -18.25883 -17.83110 -17.36934 -16.97877 -16.79815 -15.97001 -15.63610 -15.04354 -14.79085 -14.76540 -14.65623 -14.31970 -14.26977 -14.17825 -13.83973 -13.37036 -13.17077 -13.09292 -12.79689 -12.62033 -12.52709 -12.29805 -12.23917 -12.17467 -11.90340 -11.68750 -11.56651 -11.26072 -11.02527 -10.85222 -10.80668 -10.54506 -10.32138 -10.03545 -9.56919 -9.24603 -8.85093 -8.57683 -7.36028 -6.05299 -4.02600 0.24264 1.43644 1.43944 2.58055 3.06404 3.23082 3.26538 3.33994 3.34965 3.53411 3.73222 3.92407 4.11438 4.40543 4.46383 4.62352 4.70291 4.75755 4.88121 5.00365 5.11533 5.13257 5.24932 5.29424 5.38055 5.42835 5.49609 5.53516 5.81870 5.88418 6.04809 6.17195 6.26348 6.48981 6.65564 6.82824 6.86958 6.96695 7.39055 7.56726 7.87186 7.96413 8.09509 8.65447 9.04351 9.55986 11.07860 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.001822 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.574025 B =15360.090387 C =15536.986044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.175 3.825 3 H 0.078 0.922 4 N -0.664 5.664 5 C 0.025 3.975 6 C 0.118 3.882 7 H 0.094 0.906 8 O -0.532 6.532 9 C 0.022 3.978 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.162 3.838 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.167 3.833 22 N -0.334 5.334 23 O 0.113 5.887 24 C 0.088 3.912 25 C 0.387 3.613 26 F -0.171 7.171 27 F -0.171 7.171 28 N -0.431 5.431 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.369 0.631 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.080 0.920 39 H 0.010 0.990 40 H 0.048 0.952 41 H -0.013 1.013 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 0.807 -33.635 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.096 0.904 4 N -0.297 5.297 5 C -0.105 4.105 6 C 0.057 3.943 7 H 0.112 0.888 8 O -0.336 6.336 9 C -0.108 4.108 10 N -0.243 5.243 11 C -0.113 4.113 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.100 0.900 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.106 4.106 22 N -0.033 5.033 23 O 0.045 5.955 24 C -0.136 4.136 25 C 0.331 3.669 26 F -0.152 7.152 27 F -0.152 7.152 28 N -0.165 5.165 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.215 0.785 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.099 0.901 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.004 0.996 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.099 -0.326 -32.536 32.794 hybrid contribution 0.566 2.851 -0.129 2.909 sum -3.533 2.526 -32.664 32.952 Atomic orbital electron populations 1.21818 0.91709 1.03603 1.02458 1.19916 0.96947 0.94820 0.81933 0.90411 1.60502 1.34266 1.32448 1.02486 1.22872 1.02003 0.94107 0.91507 1.21851 0.94384 0.87851 0.90215 0.88815 1.86628 1.22849 1.32414 1.91696 1.22770 1.00415 0.94841 0.92765 1.61851 1.15798 1.44824 1.01871 1.22289 0.88735 0.98944 1.01306 1.20202 0.95775 0.92183 0.88231 1.21035 1.44030 1.00617 0.88949 0.90045 1.24911 0.95130 0.97426 0.95968 1.69892 1.48633 1.36571 0.98774 0.86864 0.79232 0.85801 0.77838 1.20134 1.21186 1.19436 1.26051 0.99987 0.86937 0.97588 1.74767 1.13858 1.17776 0.96861 1.85401 1.54916 1.33775 1.21359 1.29319 1.01869 0.82246 1.00182 1.19215 0.73750 0.93913 0.79994 1.93129 1.72029 1.78688 1.71382 1.93136 1.40715 1.85296 1.96019 1.71876 1.13159 1.30056 1.01398 0.91069 0.90669 0.92127 0.83592 0.89989 0.94101 0.78490 0.90967 0.95392 0.90122 0.97178 0.93290 0.99579 0.95942 0.92665 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.40 37.15 0.35 -0.79 16 2 C 0.18 1.63 3.16 -68.87 -0.22 1.41 16 3 H 0.08 0.69 7.80 -51.93 -0.40 0.28 16 4 N -0.66 -6.92 6.16 -107.96 -0.67 -7.58 16 5 C 0.02 0.25 5.15 -3.82 -0.02 0.23 16 6 C 0.12 1.58 3.13 -26.73 -0.08 1.49 16 7 H 0.09 1.33 6.26 -51.93 -0.33 1.01 16 8 O -0.53 -8.12 13.15 -35.23 -0.46 -8.59 16 9 C 0.02 0.35 4.60 -3.82 -0.02 0.33 16 10 N -0.52 -10.86 4.70 -244.37 -1.15 -12.01 16 11 C 0.04 0.69 9.17 60.07 0.55 1.24 16 12 C 0.16 3.95 3.79 -4.97 -0.02 3.93 16 13 C -0.51 -14.59 9.07 -34.44 -0.31 -14.90 16 14 H 0.08 2.56 7.35 -52.48 -0.39 2.17 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 17 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C 0.17 1.70 6.71 -156.37 -1.05 0.66 16 22 N -0.33 -3.50 12.15 30.90 0.38 -3.12 16 23 O 0.11 0.90 11.31 18.11 0.20 1.11 16 24 C 0.09 0.63 7.95 -13.06 -0.10 0.53 16 25 C 0.39 1.46 5.86 36.01 0.21 1.67 16 26 F -0.17 -0.97 17.32 2.25 0.04 -0.93 16 27 F -0.17 -1.02 17.32 2.25 0.04 -0.98 16 28 N -0.43 -4.28 11.55 -9.87 -0.11 -4.40 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.56 7.45 -51.93 -0.39 0.18 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.35 3.80 8.35 -39.29 -0.33 3.47 16 33 H 0.08 0.76 7.44 -51.93 -0.39 0.37 16 34 H 0.04 0.39 8.06 -51.92 -0.42 -0.03 16 35 H 0.37 4.58 9.05 45.56 0.41 4.99 16 36 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 37 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.08 1.76 6.86 -51.93 -0.36 1.40 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 41 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 42 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.16 -0.24 8.14 -51.93 -0.42 -0.66 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -34.86 375.57 -6.13 -40.98 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.35 Total: 2.30 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.81 Total: -2.33 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.78 Total: -54.07 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.26 Total: -7.48 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.08 Total: -1.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.86 -6.13 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772053929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.959 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds