Wall clock time and date at job start Tue Mar 31 2020 19:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 5 5 C 1.46903 * 111.00131 * 275.00245 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00248 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99357 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46811 * 90.00524 * 17 15 13 19 19 H 1.48502 * 109.46643 * 209.99901 * 17 15 13 20 20 H 1.48499 * 109.47300 * 329.99977 * 17 15 13 21 21 C 1.50698 * 109.47276 * 239.99828 * 2 1 3 22 22 N 1.29950 * 126.28892 * 285.03103 * 21 2 1 23 23 O 1.21300 * 110.24851 * 179.97438 * 22 21 2 24 24 C 1.33641 * 109.81329 * 359.97438 * 23 22 21 25 25 C 1.50707 * 126.54785 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47139 * 119.97570 * 25 24 23 27 27 F 1.39899 * 109.46810 * 239.97383 * 25 24 23 28 28 N 1.31124 * 106.89871 * 359.76718 * 24 23 22 29 29 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 32 32 H 1.00904 * 111.00509 * 151.04084 * 4 2 1 33 33 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 34 34 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 35 35 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 36 36 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 37 37 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 38 38 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 39 39 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 40 40 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 41 41 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 42 42 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 43 43 H 0.96999 * 119.99895 * 180.02562 * 16 15 13 44 44 H 1.08996 * 109.47063 * 359.97147 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3470 6 6 2.5961 -0.5330 3.5742 7 1 3.5915 -0.9264 3.3683 8 8 1.7097 -1.6130 3.8741 9 6 2.6620 0.4203 4.7692 10 7 3.2668 -0.2721 5.9149 11 6 4.6744 -0.5982 5.6499 12 6 3.1330 0.5246 7.1419 13 6 3.5374 -0.3102 8.3296 14 1 3.8618 -1.3305 8.1871 15 6 3.4932 0.2284 9.5980 16 7 3.8466 -0.5000 10.6344 17 14 2.9328 1.9933 9.8442 18 1 1.4624 2.0215 10.0501 19 1 3.6104 2.5662 11.0350 20 1 3.2801 2.7950 8.6435 21 6 2.0323 -0.7104 -1.2304 22 7 2.0326 -1.9944 -1.4310 23 8 2.5027 -2.2491 -2.5198 24 6 2.8572 -1.1175 -3.1361 25 6 3.4778 -0.9972 -4.5042 26 9 2.6455 -0.2320 -5.3281 27 9 4.7265 -0.3757 -4.3966 28 7 2.5567 -0.1317 -2.3254 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1207 1.0287 33 1 1.0870 0.6162 2.5525 34 1 2.7588 1.0461 2.1182 35 1 0.8037 -1.3361 4.0681 36 1 1.6550 0.7448 5.0310 37 1 3.2673 1.2884 4.5084 38 1 5.0780 -1.1714 6.4846 39 1 5.2449 0.3232 5.5323 40 1 4.7449 -1.1883 4.7361 41 1 3.7773 1.4014 7.0778 42 1 2.0968 0.8428 7.2573 43 1 3.8152 -0.1212 11.5268 44 1 3.6022 -1.9905 -4.9353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772053929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:09 Heat of formation + Delta-G solvation = -90.660722 kcal Electronic energy + Delta-G solvation = -28336.686442 eV Core-core repulsion = 23769.790496 eV Total energy + Delta-G solvation = -4566.895946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -50.30202 -48.33512 -47.05105 -39.79683 -38.49094 -37.20063 -36.34082 -34.60674 -34.17037 -32.17620 -30.62115 -29.27680 -28.83369 -27.44192 -26.28284 -24.86800 -24.32305 -22.60759 -22.06653 -21.64026 -19.72463 -19.53396 -19.03929 -18.60382 -18.25302 -17.93531 -17.74657 -17.08757 -16.86715 -16.26822 -16.06318 -15.81671 -15.73297 -15.32056 -15.16228 -14.65836 -14.65589 -14.59159 -14.51517 -14.03458 -13.86918 -13.71918 -13.52303 -13.35118 -13.01698 -12.97352 -12.91424 -12.78714 -12.57291 -12.53944 -12.41868 -12.32390 -12.29402 -11.91995 -11.64011 -11.53159 -11.48462 -10.79135 -10.71132 -9.61663 -8.97828 -8.28581 -6.32515 -0.34445 0.74799 0.96934 1.33882 1.35950 1.46287 1.99899 2.33719 2.57617 2.76855 2.86425 3.04124 3.22690 3.37111 3.60252 3.63998 3.71917 3.84172 3.98240 4.00811 4.16494 4.21038 4.26555 4.37520 4.45647 4.51113 4.59097 4.61932 4.70656 4.74487 4.80149 4.87080 5.00157 5.07982 5.16931 5.21732 5.51993 5.73209 5.97111 6.05779 6.33331 6.65582 6.74207 6.76398 7.05255 7.30922 8.88270 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.001822 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.574025 B =15360.090387 C =15536.986044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.176 3.824 3 H 0.085 0.915 4 N -0.671 5.671 5 C 0.037 3.963 6 C 0.126 3.874 7 H 0.084 0.916 8 O -0.555 6.555 9 C 0.022 3.978 10 N -0.542 5.542 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.518 4.518 14 H 0.033 0.967 15 C 0.003 3.997 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.250 1.250 21 C 0.159 3.841 22 N -0.359 5.359 23 O 0.123 5.877 24 C 0.098 3.902 25 C 0.388 3.612 26 F -0.182 7.182 27 F -0.183 7.183 28 N -0.462 5.462 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.340 0.660 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.380 0.620 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.020 0.980 40 H 0.074 0.926 41 H -0.012 1.012 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 2.634 -35.952 36.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 H 0.103 0.897 4 N -0.304 5.304 5 C -0.093 4.093 6 C 0.066 3.934 7 H 0.102 0.898 8 O -0.361 6.361 9 C -0.107 4.107 10 N -0.265 5.265 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.556 4.556 14 H 0.052 0.948 15 C -0.194 4.194 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.174 1.174 21 C -0.114 4.114 22 N -0.058 5.058 23 O 0.055 5.945 24 C -0.125 4.125 25 C 0.333 3.667 26 F -0.163 7.163 27 F -0.164 7.164 28 N -0.195 5.195 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.005 0.995 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.941 1.506 -34.888 35.268 hybrid contribution 0.866 2.157 0.509 2.380 sum -4.075 3.664 -34.378 34.812 Atomic orbital electron populations 1.21778 0.91029 1.02910 1.03307 1.19956 0.97371 0.94852 0.81274 0.89728 1.60485 1.34027 1.32836 1.03038 1.22700 1.02950 0.93677 0.89932 1.21745 0.93996 0.87148 0.90525 0.89788 1.86595 1.23899 1.33692 1.91910 1.22883 1.00633 0.95522 0.91622 1.61719 1.16664 1.45489 1.02663 1.22198 0.88324 0.99271 1.00928 1.19955 0.95778 0.91522 0.88216 1.21284 1.43810 0.99286 0.91251 0.94823 1.25923 0.95154 1.02847 0.95429 1.70063 1.50274 1.39174 0.99491 0.85648 0.79179 0.79262 0.78399 1.18785 1.20836 1.17374 1.26196 1.00210 0.86961 0.98028 1.74740 1.14929 1.18168 0.97972 1.85364 1.54558 1.33777 1.20761 1.30089 1.00191 0.81406 1.00841 1.20061 0.72427 0.95999 0.78210 1.93106 1.72463 1.79368 1.71347 1.93110 1.41521 1.85850 1.95942 1.71874 1.14439 1.31192 1.02030 0.92469 0.89628 0.91446 0.84176 0.88496 0.92848 0.77205 0.89905 0.93900 0.93749 0.96159 0.90718 0.99467 0.95096 0.92439 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.40 71.98 0.68 -1.31 16 2 C 0.18 3.03 3.16 44.17 0.14 3.17 16 3 H 0.09 1.33 7.80 -2.39 -0.02 1.31 16 4 N -0.67 -12.95 6.16 -495.46 -3.05 -16.01 16 5 C 0.04 0.66 5.15 86.30 0.44 1.11 16 6 C 0.13 3.15 3.13 30.60 0.10 3.24 16 7 H 0.08 2.26 6.26 -2.39 -0.01 2.24 16 8 O -0.56 -16.28 13.15 -148.98 -1.96 -18.24 16 9 C 0.02 0.66 4.60 86.30 0.40 1.05 16 10 N -0.54 -22.25 4.70 -927.04 -4.36 -26.60 16 11 C 0.04 1.60 9.17 127.69 1.17 2.77 16 12 C 0.17 8.24 3.79 85.55 0.32 8.56 16 13 C -0.52 -30.52 9.07 25.60 0.23 -30.28 16 14 H 0.03 2.24 7.35 -2.91 -0.02 2.22 16 15 C 0.00 0.20 5.47 84.66 0.46 0.67 16 16 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 17 Si 0.95 44.00 27.47 68.60 1.88 45.88 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 21 C 0.16 3.09 6.71 138.46 0.93 4.01 16 22 N -0.36 -7.24 12.15 -60.31 -0.73 -7.97 16 23 O 0.12 1.80 11.31 74.86 0.85 2.65 16 24 C 0.10 1.27 7.95 88.38 0.70 1.97 16 25 C 0.39 1.97 5.86 71.24 0.42 2.39 16 26 F -0.18 -1.72 17.32 44.97 0.78 -0.94 16 27 F -0.18 -1.85 17.32 44.97 0.78 -1.07 16 28 N -0.46 -8.68 11.55 -303.20 -3.50 -12.19 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.09 7.45 -2.38 -0.02 1.07 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.34 7.14 8.35 -89.69 -0.75 6.39 16 33 H 0.10 1.48 7.44 -2.39 -0.02 1.46 16 34 H 0.05 0.85 8.06 -2.38 -0.02 0.83 16 35 H 0.38 8.88 9.05 -74.06 -0.67 8.21 16 36 H 0.08 2.27 7.93 -2.39 -0.02 2.25 16 37 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 38 H 0.04 2.01 6.86 -2.39 -0.02 2.00 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 2.47 6.21 -2.38 -0.01 2.46 16 41 H -0.01 -0.58 7.18 -2.39 -0.02 -0.60 16 42 H 0.03 1.43 7.36 -2.39 -0.02 1.41 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.22 -1.56 8.14 -2.39 -0.02 -1.58 16 Total: -1.00 -78.25 375.57 -3.45 -81.69 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.42 Total: 15.33 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.99 Total: -2.65 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -11.35 Total: -122.66 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.11 Total: -15.59 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 1.56 Total: -2.01 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -78.25 -3.45 -81.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772053929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.968 kcal (2) G-P(sol) polarization free energy of solvation -78.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds