Wall clock time and date at job start Tue Mar 31 2020 19:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 N 1.46903 * 109.46643 * 119.99683 * 2 1 3 5 5 C 1.46903 * 111.00177 * 274.99960 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.50694 * 109.47317 * 239.99506 * 2 1 3 22 22 N 1.29952 * 126.28893 * 285.02533 * 21 2 1 23 23 O 1.21299 * 110.25105 * 179.97438 * 22 21 2 24 24 C 1.33646 * 109.81132 * 0.02562 * 23 22 21 25 25 C 1.50700 * 126.54926 * 179.97438 * 24 23 22 26 26 F 1.39904 * 109.46980 * 119.97785 * 25 24 23 27 27 F 1.39895 * 109.47156 * 239.97322 * 25 24 23 28 28 N 1.31131 * 106.89860 * 359.76748 * 24 23 22 29 29 H 1.08999 * 109.47607 * 300.00613 * 1 2 3 30 30 H 1.09003 * 109.46749 * 60.00768 * 1 2 3 31 31 H 1.09006 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99771 * 151.04910 * 4 2 1 33 33 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 34 34 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 35 35 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 38 38 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 39 39 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 41 41 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 42 42 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 43 43 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.47508 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5960 -0.5326 3.5743 7 1 1.9707 -1.4080 3.7501 8 8 3.9444 -0.9482 3.3480 9 6 2.5436 0.3855 4.7971 10 7 3.0362 -0.3400 5.9756 11 6 2.1343 -1.4444 6.3290 12 6 3.2250 0.5701 7.1132 13 6 3.9556 -0.1502 8.2170 14 1 4.2505 -1.1809 8.0864 15 6 4.2474 0.5066 9.3936 16 7 4.8854 -0.1219 10.3567 17 14 3.7379 2.2895 9.6192 18 1 2.3790 2.3443 10.2157 19 1 4.7021 2.9696 10.5209 20 1 3.7274 2.9720 8.3004 21 6 2.0324 -0.7105 -1.2303 22 7 2.0327 -1.9944 -1.4308 23 8 2.5028 -2.2493 -2.5196 24 6 2.8582 -1.1178 -3.1356 25 6 3.4801 -0.9976 -4.5030 26 9 2.6487 -0.2320 -5.3277 27 9 4.7289 -0.3765 -4.3944 28 7 2.5584 -0.1319 -2.3246 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0289 33 1 1.0869 0.6165 2.5525 34 1 2.7587 1.0463 2.1182 35 1 4.5583 -0.2194 3.1840 36 1 1.5151 0.7025 4.9697 37 1 3.1690 1.2608 4.6212 38 1 2.0673 -2.1404 5.4928 39 1 2.5229 -1.9648 7.2044 40 1 1.1439 -1.0475 6.5516 41 1 3.8086 1.4339 6.7945 42 1 2.2530 0.9028 7.4775 43 1 5.0911 0.3403 11.1844 44 1 3.6046 -1.9909 -4.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772053934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:15 Heat of formation + Delta-G solvation = -61.519986 kcal Electronic energy + Delta-G solvation = -28352.777247 eV Core-core repulsion = 23787.144938 eV Total energy + Delta-G solvation = -4565.632309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 10.43 seconds Orbital eigenvalues (eV) -49.92081 -47.94055 -46.37002 -38.79869 -37.50258 -36.08549 -35.36230 -33.47379 -32.48127 -31.24822 -29.31797 -28.38727 -27.64159 -26.25417 -25.22699 -23.91445 -23.29665 -21.33908 -21.26385 -20.12544 -19.09206 -18.94831 -18.24521 -17.81742 -17.35663 -17.03769 -16.72006 -16.17313 -15.56362 -15.18905 -14.76088 -14.74914 -14.61399 -14.25493 -14.18635 -14.17651 -13.89399 -13.35816 -13.17597 -13.09974 -12.78694 -12.67757 -12.53679 -12.29286 -12.23942 -12.16060 -11.89244 -11.66877 -11.58741 -11.28265 -11.00194 -10.84192 -10.76804 -10.70626 -10.31487 -9.94112 -9.64360 -9.25211 -8.89379 -8.58702 -7.36536 -6.05495 -4.02697 0.25305 1.44694 1.45191 2.59093 3.07764 3.23965 3.26152 3.33901 3.34950 3.55231 3.74583 3.93819 4.12961 4.40435 4.44958 4.60543 4.63909 4.83095 4.88501 5.01240 5.10287 5.12026 5.23202 5.27964 5.38427 5.40882 5.51477 5.57600 5.80068 5.90124 6.10273 6.20133 6.26798 6.50928 6.69286 6.82745 6.92359 6.97958 7.39872 7.57651 7.85109 7.88433 8.05967 8.65571 9.04286 9.55871 11.07673 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.001839 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.623888 B =15220.369300 C =15395.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.175 3.825 3 H 0.079 0.921 4 N -0.671 5.671 5 C 0.027 3.973 6 C 0.115 3.885 7 H 0.107 0.893 8 O -0.544 6.544 9 C 0.022 3.978 10 N -0.520 5.520 11 C 0.035 3.965 12 C 0.162 3.838 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.876 3.124 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.168 3.832 22 N -0.335 5.335 23 O 0.113 5.887 24 C 0.088 3.912 25 C 0.387 3.613 26 F -0.171 7.171 27 F -0.170 7.170 28 N -0.431 5.431 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.352 0.648 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.368 0.632 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.009 0.991 41 H 0.026 0.974 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -0.521 -32.679 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.064 3.936 3 H 0.097 0.903 4 N -0.305 5.305 5 C -0.103 4.103 6 C 0.054 3.946 7 H 0.124 0.876 8 O -0.348 6.348 9 C -0.108 4.108 10 N -0.243 5.243 11 C -0.114 4.114 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.100 0.900 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.105 4.105 22 N -0.034 5.034 23 O 0.046 5.954 24 C -0.136 4.136 25 C 0.331 3.669 26 F -0.152 7.152 27 F -0.151 7.151 28 N -0.164 5.164 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.214 0.786 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.028 0.972 41 H 0.044 0.956 42 H 0.000 1.000 43 H 0.073 0.927 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.732 -1.636 -31.593 32.566 hybrid contribution 0.002 2.644 0.048 2.644 sum -7.730 1.008 -31.545 32.494 Atomic orbital electron populations 1.21829 0.91795 1.03536 1.02520 1.19900 0.96832 0.94936 0.81954 0.90312 1.60541 1.34859 1.32438 1.02704 1.22829 1.02011 0.94004 0.91457 1.21958 0.84152 0.98020 0.90423 0.87555 1.86631 1.17879 1.36661 1.93617 1.22749 0.98476 0.96670 0.92869 1.61852 1.46238 1.11296 1.04923 1.22298 0.93250 0.94459 1.01349 1.20207 0.94814 0.92433 0.88974 1.21039 1.35883 1.00623 0.97065 0.90032 1.24914 0.94945 0.97774 0.95831 1.69897 1.41029 1.36944 1.06002 0.86852 0.78565 0.85914 0.78295 1.20387 1.21127 1.19343 1.26037 0.99951 0.86933 0.97583 1.74749 1.13961 1.17785 0.96904 1.85397 1.54927 1.33779 1.21340 1.29319 1.01841 0.82228 1.00174 1.19214 0.73764 0.93913 0.79981 1.93130 1.72094 1.78678 1.71346 1.93137 1.40681 1.85300 1.96006 1.71878 1.13127 1.30047 1.01399 0.90669 0.92045 0.91161 0.82767 0.89709 0.94393 0.78612 0.95082 0.91254 0.93027 0.90096 0.97222 0.95597 1.00021 0.92669 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.40 37.16 0.35 -0.80 16 2 C 0.18 1.65 3.16 -68.87 -0.22 1.43 16 3 H 0.08 0.70 7.80 -51.93 -0.40 0.30 16 4 N -0.67 -7.08 6.30 -107.95 -0.68 -7.76 16 5 C 0.03 0.28 5.16 -3.83 -0.02 0.26 16 6 C 0.11 1.54 3.08 -26.74 -0.08 1.46 16 7 H 0.11 1.56 6.55 -51.93 -0.34 1.22 16 8 O -0.54 -8.03 12.72 -35.23 -0.45 -8.48 16 9 C 0.02 0.35 4.62 -3.83 -0.02 0.34 16 10 N -0.52 -10.84 4.62 -244.37 -1.13 -11.97 16 11 C 0.03 0.68 9.14 60.07 0.55 1.23 16 12 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 13 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 14 H 0.08 2.56 7.37 -52.48 -0.39 2.18 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 17 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.17 1.73 6.71 -156.37 -1.05 0.68 16 22 N -0.34 -3.53 12.15 30.90 0.38 -3.16 16 23 O 0.11 0.91 11.31 18.09 0.20 1.12 16 24 C 0.09 0.65 7.95 -13.06 -0.10 0.54 16 25 C 0.39 1.50 5.86 36.01 0.21 1.71 16 26 F -0.17 -0.98 17.32 2.25 0.04 -0.94 16 27 F -0.17 -1.04 17.32 2.25 0.04 -1.00 16 28 N -0.43 -4.33 11.55 -9.86 -0.11 -4.44 16 29 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.35 4.06 7.91 -39.29 -0.31 3.75 16 33 H 0.08 0.81 7.44 -51.93 -0.39 0.42 16 34 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.37 4.37 9.05 45.56 0.41 4.78 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 38 H 0.05 0.90 6.47 -51.93 -0.34 0.56 16 39 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.03 0.63 6.99 -51.93 -0.36 0.27 16 42 H -0.02 -0.43 7.55 -51.93 -0.39 -0.83 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.16 -0.22 8.14 -51.93 -0.42 -0.65 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -34.52 375.12 -6.12 -40.64 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.36 Total: 2.69 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.81 Total: -2.27 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.77 Total: -54.28 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.24 Total: -7.36 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.08 Total: -1.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.52 -6.12 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772053934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.884 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.43 seconds