Wall clock time and date at job start Tue Mar 31 2020 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 N 1.46903 * 109.46643 * 119.99683 * 2 1 3 5 5 C 1.46903 * 111.00177 * 274.99960 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.50694 * 109.47317 * 239.99506 * 2 1 3 22 22 N 1.29952 * 126.28893 * 285.02533 * 21 2 1 23 23 O 1.21299 * 110.25105 * 179.97438 * 22 21 2 24 24 C 1.33646 * 109.81132 * 0.02562 * 23 22 21 25 25 C 1.50700 * 126.54926 * 179.97438 * 24 23 22 26 26 F 1.39904 * 109.46980 * 119.97785 * 25 24 23 27 27 F 1.39895 * 109.47156 * 239.97322 * 25 24 23 28 28 N 1.31131 * 106.89860 * 359.76748 * 24 23 22 29 29 H 1.08999 * 109.47607 * 300.00613 * 1 2 3 30 30 H 1.09003 * 109.46749 * 60.00768 * 1 2 3 31 31 H 1.09006 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99771 * 151.04910 * 4 2 1 33 33 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 34 34 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 35 35 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 38 38 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 39 39 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 41 41 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 42 42 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 43 43 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.47508 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5960 -0.5326 3.5743 7 1 1.9707 -1.4080 3.7501 8 8 3.9444 -0.9482 3.3480 9 6 2.5436 0.3855 4.7971 10 7 3.0362 -0.3400 5.9756 11 6 2.1343 -1.4444 6.3290 12 6 3.2250 0.5701 7.1132 13 6 3.9556 -0.1502 8.2170 14 1 4.2505 -1.1809 8.0864 15 6 4.2474 0.5066 9.3936 16 7 4.8854 -0.1219 10.3567 17 14 3.7379 2.2895 9.6192 18 1 2.3790 2.3443 10.2157 19 1 4.7021 2.9696 10.5209 20 1 3.7274 2.9720 8.3004 21 6 2.0324 -0.7105 -1.2303 22 7 2.0327 -1.9944 -1.4308 23 8 2.5028 -2.2493 -2.5196 24 6 2.8582 -1.1178 -3.1356 25 6 3.4801 -0.9976 -4.5030 26 9 2.6487 -0.2320 -5.3277 27 9 4.7289 -0.3765 -4.3944 28 7 2.5584 -0.1319 -2.3246 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0289 33 1 1.0869 0.6165 2.5525 34 1 2.7587 1.0463 2.1182 35 1 4.5583 -0.2194 3.1840 36 1 1.5151 0.7025 4.9697 37 1 3.1690 1.2608 4.6212 38 1 2.0673 -2.1404 5.4928 39 1 2.5229 -1.9648 7.2044 40 1 1.1439 -1.0475 6.5516 41 1 3.8086 1.4339 6.7945 42 1 2.2530 0.9028 7.4775 43 1 5.0911 0.3403 11.1844 44 1 3.6046 -1.9909 -4.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772053934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:05 Heat of formation + Delta-G solvation = -92.810940 kcal Electronic energy + Delta-G solvation = -28354.134124 eV Core-core repulsion = 23787.144938 eV Total energy + Delta-G solvation = -4566.989186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 8.72 seconds Orbital eigenvalues (eV) -50.29709 -48.32987 -47.04758 -39.84626 -38.48721 -37.23808 -36.35498 -34.60916 -34.16610 -32.16590 -30.65387 -29.30032 -28.83115 -27.43978 -26.26438 -24.86209 -24.32314 -22.59026 -22.05395 -21.63946 -19.72213 -19.54238 -19.03926 -18.60004 -18.24854 -17.92860 -17.73029 -17.26965 -16.71621 -16.48734 -16.03294 -15.82896 -15.75069 -15.17155 -15.15056 -14.69025 -14.65281 -14.60988 -14.50577 -14.03247 -13.80964 -13.71962 -13.62028 -13.38609 -13.02909 -12.95593 -12.89591 -12.79564 -12.60622 -12.55902 -12.49724 -12.31297 -12.27265 -11.82841 -11.63227 -11.53781 -11.48638 -10.81606 -10.79870 -9.66706 -8.98164 -8.28645 -6.32419 -0.34327 0.75079 0.97172 1.33543 1.35761 1.46527 2.00153 2.33693 2.57739 2.77411 2.86819 3.03972 3.22622 3.37704 3.60670 3.63825 3.65985 3.85695 4.00545 4.05458 4.12271 4.19809 4.21461 4.40576 4.48859 4.51425 4.59162 4.63791 4.70740 4.75724 4.79517 4.89306 5.00885 5.07556 5.15083 5.24392 5.52548 5.73156 5.97921 6.07607 6.34202 6.65623 6.74285 6.76285 6.91858 7.30964 8.88230 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.001839 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.623888 B =15220.369300 C =15395.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.176 3.824 3 H 0.086 0.914 4 N -0.678 5.678 5 C 0.038 3.962 6 C 0.124 3.876 7 H 0.093 0.907 8 O -0.565 6.565 9 C 0.023 3.977 10 N -0.540 5.540 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.517 4.517 14 H 0.034 0.966 15 C 0.003 3.997 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.246 1.246 21 C 0.159 3.841 22 N -0.360 5.360 23 O 0.123 5.877 24 C 0.099 3.901 25 C 0.388 3.612 26 F -0.182 7.182 27 F -0.183 7.183 28 N -0.461 5.461 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.345 0.655 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.379 0.621 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.022 0.978 41 H 0.032 0.968 42 H -0.013 1.013 43 H 0.267 0.733 44 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 1.238 -34.933 35.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 H 0.103 0.897 4 N -0.311 5.311 5 C -0.091 4.091 6 C 0.064 3.936 7 H 0.111 0.889 8 O -0.370 6.370 9 C -0.106 4.106 10 N -0.264 5.264 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.556 4.556 14 H 0.052 0.948 15 C -0.194 4.194 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.170 1.170 21 C -0.114 4.114 22 N -0.059 5.059 23 O 0.055 5.945 24 C -0.125 4.125 25 C 0.333 3.667 26 F -0.163 7.163 27 F -0.164 7.164 28 N -0.195 5.195 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.004 0.996 43 H 0.076 0.924 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.820 0.129 -33.883 35.012 hybrid contribution 0.383 1.971 0.668 2.116 sum -8.437 2.100 -33.215 34.334 Atomic orbital electron populations 1.21794 0.91007 1.02959 1.03378 1.19952 0.97342 0.94941 0.81269 0.89666 1.60526 1.34458 1.32834 1.03286 1.22671 1.02900 0.93646 0.89925 1.21817 0.83624 0.97266 0.90854 0.88907 1.86599 1.18814 1.37943 1.93685 1.22860 0.99301 0.97048 0.91425 1.61719 1.47920 1.11532 1.05251 1.22190 0.93299 0.94492 1.00706 1.19958 0.94209 0.92462 0.88875 1.21286 1.36202 0.99048 0.99033 0.94810 1.25924 0.94845 1.03327 0.95284 1.70067 1.42741 1.39381 1.06823 0.85648 0.78389 0.79202 0.79249 1.19311 1.20738 1.16971 1.26189 1.00184 0.86969 0.98030 1.74721 1.15013 1.18157 0.97996 1.85359 1.54573 1.33777 1.20748 1.30090 1.00180 0.81394 1.00837 1.20060 0.72430 0.96002 0.78204 1.93108 1.72514 1.79351 1.71300 1.93110 1.41516 1.85861 1.95933 1.71875 1.14403 1.31188 1.02037 0.89651 0.91319 0.92399 0.83574 0.88284 0.93039 0.77272 0.93522 0.90244 0.90924 0.93750 0.95918 0.95046 0.99563 0.92449 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.40 71.98 0.68 -1.31 16 2 C 0.18 3.06 3.16 44.17 0.14 3.20 16 3 H 0.09 1.36 7.80 -2.39 -0.02 1.34 16 4 N -0.68 -13.28 6.30 -495.46 -3.12 -16.40 16 5 C 0.04 0.69 5.16 86.30 0.44 1.14 16 6 C 0.12 3.11 3.08 30.59 0.09 3.21 16 7 H 0.09 2.59 6.55 -2.39 -0.02 2.58 16 8 O -0.56 -16.06 12.72 -148.98 -1.90 -17.95 16 9 C 0.02 0.67 4.62 86.30 0.40 1.06 16 10 N -0.54 -22.16 4.62 -927.04 -4.28 -26.44 16 11 C 0.04 1.62 9.14 127.69 1.17 2.79 16 12 C 0.17 8.21 3.79 85.56 0.32 8.53 16 13 C -0.52 -30.43 9.01 25.60 0.23 -30.20 16 14 H 0.03 2.24 7.37 -2.91 -0.02 2.22 16 15 C 0.00 0.19 5.47 84.66 0.46 0.65 16 16 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 17 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.25 -10.41 6.54 99.48 0.65 -9.75 16 21 C 0.16 3.13 6.71 138.46 0.93 4.06 16 22 N -0.36 -7.31 12.15 -60.30 -0.73 -8.04 16 23 O 0.12 1.83 11.31 74.81 0.85 2.68 16 24 C 0.10 1.30 7.95 88.38 0.70 2.00 16 25 C 0.39 2.07 5.86 71.24 0.42 2.49 16 26 F -0.18 -1.74 17.32 44.97 0.78 -0.96 16 27 F -0.18 -1.92 17.32 44.97 0.78 -1.14 16 28 N -0.46 -8.80 11.55 -303.18 -3.50 -12.30 16 29 H 0.08 1.09 7.45 -2.39 -0.02 1.07 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.35 7.63 7.91 -89.69 -0.71 6.93 16 33 H 0.10 1.55 7.44 -2.39 -0.02 1.53 16 34 H 0.05 0.82 8.06 -2.39 -0.02 0.80 16 35 H 0.38 8.53 9.05 -74.06 -0.67 7.86 16 36 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 37 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 38 H 0.07 2.50 6.47 -2.38 -0.02 2.48 16 39 H 0.04 2.03 6.76 -2.39 -0.02 2.01 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.03 1.47 6.99 -2.39 -0.02 1.45 16 42 H -0.01 -0.62 7.55 -2.38 -0.02 -0.64 16 43 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 44 H 0.22 -1.51 8.14 -2.39 -0.02 -1.53 16 Total: -1.00 -77.51 375.12 -3.34 -80.85 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.38 Total: 16.12 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.99 Total: -2.39 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -11.34 Total: -123.06 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.05 Total: -15.28 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 1.56 Total: -2.10 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -77.51 -3.34 -80.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772053934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.72 seconds