Wall clock time and date at job start Tue Mar 31 2020 17:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48494 * 109.47008 * 240.00134 * 3 2 1 5 5 H 1.48506 * 109.46811 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47072 * 119.99514 * 3 2 1 7 7 C 1.40044 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00319 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99844 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00388 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00381 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.38287 * 119.97310 * 270.02054 * 13 12 11 15 15 C 1.38243 * 120.11206 * 180.02562 * 14 13 12 16 16 C 1.38170 * 120.05658 * 359.68073 * 15 14 13 17 17 C 1.38710 * 119.94104 * 0.57169 * 16 15 14 18 18 O 1.35897 * 120.05438 * 179.72372 * 17 16 15 19 19 C 1.42895 * 116.99902 * 359.72611 * 18 17 16 20 20 C 1.53003 * 109.46988 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.47247 * 65.06671 * 20 19 18 22 22 C 1.47014 * 111.00145 * 199.40400 * 21 20 19 23 23 C 1.53101 * 109.25834 * 177.60668 * 22 21 20 24 24 O 1.43015 * 109.25639 * 56.85203 * 23 22 21 25 25 C 1.43017 * 113.73796 * 301.32579 * 24 23 22 26 26 C 1.47016 * 111.00232 * 75.76786 * 21 20 19 27 27 C 1.38125 * 119.97083 * 90.00058 * 13 12 11 28 28 H 0.97003 * 120.00003 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00102 * 0.02562 * 11 9 7 30 30 H 1.08997 * 109.47304 * 59.99652 * 12 11 9 31 31 H 1.09010 * 109.46787 * 300.00408 * 12 11 9 32 32 H 1.08006 * 119.94123 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.97125 * 179.97438 * 15 14 13 34 34 H 1.07992 * 120.02799 * 180.29747 * 16 15 14 35 35 H 1.09001 * 109.47614 * 300.00077 * 19 18 17 36 36 H 1.08999 * 109.47477 * 60.00128 * 19 18 17 37 37 H 1.09000 * 109.46948 * 185.06472 * 20 19 18 38 38 H 1.08994 * 109.47067 * 305.06623 * 20 19 18 39 39 H 1.09000 * 109.50564 * 297.53947 * 22 21 20 40 40 H 1.08993 * 109.50802 * 57.67186 * 22 21 20 41 41 H 1.08992 * 109.50372 * 296.91393 * 23 22 21 42 42 H 1.08994 * 109.54065 * 176.80305 * 23 22 21 43 43 H 1.09007 * 109.50913 * 298.74209 * 25 24 23 44 44 H 1.09000 * 109.54692 * 178.63493 * 25 24 23 45 45 H 1.09003 * 109.50480 * 302.33117 * 26 21 20 46 46 H 1.09006 * 109.50492 * 62.41471 * 26 21 20 47 47 H 1.08001 * 120.03137 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6477 0.0017 12 6 1.2163 -4.9164 0.0022 13 6 2.1955 -6.0619 0.0028 14 6 2.6448 -6.5873 -1.1949 15 6 3.5427 -7.6384 -1.1978 16 6 3.9986 -8.1624 -0.0034 17 6 3.5455 -7.6406 1.1993 18 8 3.9880 -8.1580 2.3755 19 6 4.9152 -9.2426 2.2990 20 6 5.2960 -9.6885 3.7122 21 7 4.1127 -10.2374 4.3881 22 6 4.2967 -10.2482 5.8466 23 6 3.0209 -10.7703 6.5126 24 8 2.7164 -12.0685 5.9957 25 6 2.5301 -12.0946 4.5780 26 6 3.8009 -11.5858 3.8923 27 6 2.6439 -6.5859 1.1995 28 1 -0.4850 0.8401 -0.0004 29 1 2.9188 -3.6478 0.0013 30 1 0.5892 -4.9744 -0.8874 31 1 0.5899 -4.9739 0.8925 32 1 2.2929 -6.1762 -2.1297 33 1 3.8917 -8.0473 -2.1345 34 1 4.7037 -8.9804 -0.0062 35 1 4.4565 -10.0759 1.7667 36 1 5.8095 -8.9194 1.7663 37 1 6.0697 -10.4542 3.6555 38 1 5.6714 -8.8335 4.2742 39 1 5.1333 -10.8981 6.1031 40 1 4.5012 -9.2359 6.1952 41 1 2.1954 -10.0911 6.3003 42 1 3.1720 -10.8339 7.5902 43 1 1.6902 -11.4538 4.3093 44 1 2.3264 -13.1157 4.2556 45 1 3.6434 -11.5499 2.8143 46 1 4.6300 -12.2569 4.1169 47 1 2.2927 -6.1753 2.1347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019832924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:01 Heat of formation + Delta-G solvation = -88.044040 kcal Electronic energy + Delta-G solvation = -27759.953405 eV Core-core repulsion = 23715.107706 eV Total energy + Delta-G solvation = -4044.845699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.31112 -39.75422 -38.00075 -36.92740 -36.07104 -33.52033 -32.31960 -31.67041 -31.25199 -30.53065 -29.38445 -26.96045 -26.60213 -24.84743 -24.45855 -22.78047 -22.39664 -21.01309 -20.51626 -19.62271 -18.04858 -17.22560 -16.98080 -16.60654 -16.13874 -15.88391 -15.74943 -15.47368 -15.30061 -15.25010 -14.95608 -14.50157 -14.27847 -13.98406 -13.90801 -13.44314 -13.13934 -12.87353 -12.80755 -12.61039 -12.37047 -12.23083 -11.98572 -11.79285 -11.51350 -11.40840 -11.24214 -11.12743 -10.95581 -10.89562 -10.83492 -10.62516 -10.40360 -10.22296 -10.06120 -8.82696 -8.81570 -8.81242 -8.10124 -7.56127 -7.47110 -6.15187 -4.60735 1.39306 1.57391 3.08284 3.18368 3.22862 3.24997 3.26034 3.50034 3.83837 4.15456 4.38220 4.48294 4.50075 4.62122 4.66731 4.75045 4.81749 4.83077 4.87394 4.96095 4.98581 5.00683 5.13513 5.15118 5.24969 5.27168 5.34201 5.37697 5.44382 5.48784 5.56785 5.57799 5.67236 5.83101 6.05004 6.32109 6.35874 6.46314 6.47040 6.49430 6.52504 6.75114 6.83924 6.94192 7.46556 7.48275 7.96488 8.11489 8.36213 9.05471 9.57045 10.63201 10.81595 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002030 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.708792 B =13787.200470 C =14447.263174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.169 3.831 13 C -0.047 4.047 14 C -0.143 4.143 15 C -0.084 4.084 16 C -0.216 4.216 17 C 0.127 3.873 18 O -0.299 6.299 19 C 0.067 3.933 20 C 0.056 3.944 21 N -0.529 5.529 22 C 0.019 3.981 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.063 3.937 26 C 0.015 3.985 27 C -0.135 4.135 28 H 0.269 0.731 29 H 0.381 0.619 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -24.511 6.982 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.044 3.956 13 C -0.047 4.047 14 C -0.161 4.161 15 C -0.103 4.103 16 C -0.235 4.235 17 C 0.082 3.918 18 O -0.212 6.212 19 C -0.009 4.009 20 C -0.072 4.072 21 N -0.255 5.255 22 C -0.109 4.109 23 C -0.014 4.014 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.113 4.113 27 C -0.154 4.154 28 H 0.079 0.921 29 H 0.213 0.787 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.882 -24.203 7.201 27.497 hybrid contribution 1.903 0.320 -0.269 1.949 sum 12.785 -23.884 6.932 27.963 Atomic orbital electron populations 1.70014 1.07036 1.27335 1.35346 1.25707 0.94626 1.00258 0.92653 0.86428 0.79800 0.81043 0.79427 1.19309 1.20581 1.19293 1.20839 0.93553 0.89314 1.54432 0.91472 1.18235 0.87200 0.82330 0.76318 1.90601 1.14087 1.86729 1.54970 1.46180 1.08641 1.04148 1.82804 1.19828 0.92066 0.82012 1.01645 1.20015 0.96503 0.96073 0.92154 1.21043 0.99402 0.97682 0.98010 1.20871 0.96382 0.95841 0.97156 1.21126 1.05673 1.04300 0.92421 1.18966 0.94573 0.93765 0.84538 1.86160 1.59311 1.48048 1.27679 1.22739 0.92134 0.88823 0.97181 1.22184 0.90988 0.99749 0.94297 1.62126 1.37196 1.21760 1.04401 1.22805 0.98084 1.02109 0.87874 1.22682 0.96006 0.84662 0.98098 1.87978 1.91203 1.29738 1.21660 1.22655 0.96261 1.01787 0.80669 1.22867 0.98427 0.89166 1.00829 1.20379 0.99268 0.96750 0.98987 0.92068 0.78722 0.92239 0.92327 0.85744 0.86095 0.86172 0.92226 0.91689 0.92357 0.89308 0.94048 0.89243 0.91859 0.88371 0.91910 0.88441 0.89615 0.93972 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.33 11.83 55.55 0.66 -22.67 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 16.09 7.75 -12.99 -0.10 15.98 16 10 O -0.58 -19.11 15.02 5.20 0.08 -19.04 16 11 N -0.76 -17.55 5.54 -62.90 -0.35 -17.90 16 12 C 0.17 3.37 5.80 -5.19 -0.03 3.34 16 13 C -0.05 -0.76 5.25 -104.65 -0.55 -1.31 16 14 C -0.14 -2.03 9.70 -39.56 -0.38 -2.42 16 15 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 16 C -0.22 -2.55 9.04 -39.43 -0.36 -2.90 16 17 C 0.13 1.72 6.69 -39.21 -0.26 1.46 16 18 O -0.30 -3.75 10.08 -19.42 -0.20 -3.94 16 19 C 0.07 0.57 4.93 37.16 0.18 0.76 16 20 C 0.06 0.41 5.38 -3.82 -0.02 0.39 16 21 N -0.53 -4.51 4.61 -234.31 -1.08 -5.59 16 22 C 0.02 0.14 5.60 -3.71 -0.02 0.12 16 23 C 0.06 0.49 7.01 37.21 0.26 0.75 16 24 O -0.39 -3.67 10.83 -35.23 -0.38 -4.05 16 25 C 0.06 0.49 7.01 37.21 0.26 0.75 16 26 C 0.02 0.11 5.47 -3.71 -0.02 0.09 16 27 C -0.13 -2.08 9.64 -39.43 -0.38 -2.46 16 28 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 29 H 0.38 7.94 8.44 -40.82 -0.34 7.59 16 30 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.08 -51.92 -0.42 0.81 16 32 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 35 H 0.06 0.46 6.28 -51.93 -0.33 0.14 16 36 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.06 0.33 7.99 -51.93 -0.41 -0.09 16 38 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.58 6.74 -51.93 -0.35 0.23 16 46 H 0.04 0.29 8.13 -51.93 -0.42 -0.13 16 47 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -36.08 387.73 -9.88 -45.97 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.18 Total: 6.48 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.25 Total: -0.44 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.77 Total: -46.16 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.50 Total: -27.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.08 -9.88 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019832924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.077 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds