Wall clock time and date at job start Tue Mar 31 2020 17:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48494 * 109.47008 * 240.00134 * 3 2 1 5 5 H 1.48506 * 109.46811 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47072 * 119.99514 * 3 2 1 7 7 C 1.40044 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00319 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99844 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00388 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00381 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.38287 * 119.97310 * 270.02054 * 13 12 11 15 15 C 1.38243 * 120.11206 * 180.02562 * 14 13 12 16 16 C 1.38170 * 120.05658 * 359.68073 * 15 14 13 17 17 C 1.38710 * 119.94104 * 0.57169 * 16 15 14 18 18 O 1.35897 * 120.05438 * 179.72372 * 17 16 15 19 19 C 1.42895 * 116.99902 * 359.72611 * 18 17 16 20 20 C 1.53003 * 109.46988 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.47247 * 65.06671 * 20 19 18 22 22 C 1.47014 * 111.00145 * 199.40400 * 21 20 19 23 23 C 1.53101 * 109.25834 * 177.60668 * 22 21 20 24 24 O 1.43015 * 109.25639 * 56.85203 * 23 22 21 25 25 C 1.43017 * 113.73796 * 301.32579 * 24 23 22 26 26 C 1.47016 * 111.00232 * 75.76786 * 21 20 19 27 27 C 1.38125 * 119.97083 * 90.00058 * 13 12 11 28 28 H 0.97003 * 120.00003 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00102 * 0.02562 * 11 9 7 30 30 H 1.08997 * 109.47304 * 59.99652 * 12 11 9 31 31 H 1.09010 * 109.46787 * 300.00408 * 12 11 9 32 32 H 1.08006 * 119.94123 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.97125 * 179.97438 * 15 14 13 34 34 H 1.07992 * 120.02799 * 180.29747 * 16 15 14 35 35 H 1.09001 * 109.47614 * 300.00077 * 19 18 17 36 36 H 1.08999 * 109.47477 * 60.00128 * 19 18 17 37 37 H 1.09000 * 109.46948 * 185.06472 * 20 19 18 38 38 H 1.08994 * 109.47067 * 305.06623 * 20 19 18 39 39 H 1.09000 * 109.50564 * 297.53947 * 22 21 20 40 40 H 1.08993 * 109.50802 * 57.67186 * 22 21 20 41 41 H 1.08992 * 109.50372 * 296.91393 * 23 22 21 42 42 H 1.08994 * 109.54065 * 176.80305 * 23 22 21 43 43 H 1.09007 * 109.50913 * 298.74209 * 25 24 23 44 44 H 1.09000 * 109.54692 * 178.63493 * 25 24 23 45 45 H 1.09003 * 109.50480 * 302.33117 * 26 21 20 46 46 H 1.09006 * 109.50492 * 62.41471 * 26 21 20 47 47 H 1.08001 * 120.03137 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6477 0.0017 12 6 1.2163 -4.9164 0.0022 13 6 2.1955 -6.0619 0.0028 14 6 2.6448 -6.5873 -1.1949 15 6 3.5427 -7.6384 -1.1978 16 6 3.9986 -8.1624 -0.0034 17 6 3.5455 -7.6406 1.1993 18 8 3.9880 -8.1580 2.3755 19 6 4.9152 -9.2426 2.2990 20 6 5.2960 -9.6885 3.7122 21 7 4.1127 -10.2374 4.3881 22 6 4.2967 -10.2482 5.8466 23 6 3.0209 -10.7703 6.5126 24 8 2.7164 -12.0685 5.9957 25 6 2.5301 -12.0946 4.5780 26 6 3.8009 -11.5858 3.8923 27 6 2.6439 -6.5859 1.1995 28 1 -0.4850 0.8401 -0.0004 29 1 2.9188 -3.6478 0.0013 30 1 0.5892 -4.9744 -0.8874 31 1 0.5899 -4.9739 0.8925 32 1 2.2929 -6.1762 -2.1297 33 1 3.8917 -8.0473 -2.1345 34 1 4.7037 -8.9804 -0.0062 35 1 4.4565 -10.0759 1.7667 36 1 5.8095 -8.9194 1.7663 37 1 6.0697 -10.4542 3.6555 38 1 5.6714 -8.8335 4.2742 39 1 5.1333 -10.8981 6.1031 40 1 4.5012 -9.2359 6.1952 41 1 2.1954 -10.0911 6.3003 42 1 3.1720 -10.8339 7.5902 43 1 1.6902 -11.4538 4.3093 44 1 2.3264 -13.1157 4.2556 45 1 3.6434 -11.5499 2.8143 46 1 4.6300 -12.2569 4.1169 47 1 2.2927 -6.1753 2.1347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019832924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:00 Heat of formation + Delta-G solvation = -115.268839 kcal Electronic energy + Delta-G solvation = -27761.133961 eV Core-core repulsion = 23715.107706 eV Total energy + Delta-G solvation = -4046.026255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22105 -40.48293 -39.52346 -38.50171 -36.78567 -35.31971 -34.46804 -32.32959 -32.13380 -31.81417 -30.33638 -28.78263 -27.44437 -26.46513 -25.04352 -23.62791 -23.43287 -22.00506 -21.63842 -21.24332 -19.52473 -18.57120 -17.84181 -17.44459 -17.33133 -16.95170 -16.93750 -16.56076 -16.26049 -16.06639 -15.96508 -15.90051 -15.61542 -15.33235 -14.82831 -14.74182 -14.37521 -14.24127 -13.92044 -13.65050 -13.34428 -13.21152 -13.14034 -13.02045 -12.81711 -12.67508 -12.63625 -12.40830 -12.38794 -12.17665 -12.04219 -11.77857 -11.63514 -11.48523 -10.92034 -10.69985 -10.11849 -9.71760 -9.52546 -9.37645 -9.11318 -8.28973 -6.86526 0.27963 0.50814 1.40440 1.44371 1.56184 2.24350 2.26619 2.46391 2.68510 2.72049 2.93070 3.34979 3.60116 3.70805 3.82587 3.89294 3.92299 3.95652 4.10165 4.15613 4.17753 4.26502 4.28258 4.32932 4.39097 4.40284 4.51355 4.54619 4.59992 4.70095 4.73689 4.77418 4.80186 4.85326 4.88000 4.99132 5.06533 5.31302 5.32729 5.47041 5.68617 5.79804 5.86321 5.91652 5.96236 6.14132 6.17327 6.24989 6.55742 6.85778 7.51877 8.47154 8.66408 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002030 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.708792 B =13787.200470 C =14447.263174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.175 3.825 13 C -0.060 4.060 14 C -0.152 4.152 15 C -0.073 4.073 16 C -0.202 4.202 17 C 0.127 3.873 18 O -0.317 6.317 19 C 0.060 3.940 20 C 0.057 3.943 21 N -0.552 5.552 22 C 0.022 3.978 23 C 0.059 3.941 24 O -0.404 6.404 25 C 0.059 3.941 26 C 0.019 3.981 27 C -0.154 4.154 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.126 0.874 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.048 0.952 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.935 -25.689 6.309 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.609 4.609 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.403 5.403 12 C 0.051 3.949 13 C -0.061 4.061 14 C -0.171 4.171 15 C -0.091 4.091 16 C -0.221 4.221 17 C 0.082 3.918 18 O -0.231 6.231 19 C -0.016 4.016 20 C -0.070 4.070 21 N -0.278 5.278 22 C -0.106 4.106 23 C -0.017 4.017 24 O -0.323 6.323 25 C -0.018 4.018 26 C -0.109 4.109 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.132 0.868 43 H 0.067 0.933 44 H 0.133 0.867 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.414 -25.439 6.532 29.960 hybrid contribution 0.846 0.516 -0.015 0.991 sum 15.260 -24.923 6.517 29.941 Atomic orbital electron populations 1.70188 1.09567 1.29085 1.36284 1.27020 0.95577 1.05041 0.91169 0.85033 0.78170 0.74512 0.80324 1.17684 1.19808 1.17863 1.21386 0.94720 0.89955 1.54835 0.89455 1.18658 0.86848 0.84225 0.76082 1.90551 1.16197 1.87891 1.57399 1.45849 1.09174 1.04094 1.81159 1.19757 0.92813 0.82333 1.00018 1.19579 0.97168 0.95701 0.93612 1.21138 1.00189 0.98679 0.97048 1.21240 0.94672 0.94273 0.98889 1.21516 1.05046 1.04269 0.91241 1.18958 0.93938 0.93104 0.85818 1.86155 1.60171 1.49286 1.27444 1.23076 0.92091 0.87991 0.98399 1.22220 0.91090 1.00201 0.93522 1.62120 1.38175 1.22562 1.04946 1.22771 0.97911 1.02318 0.87556 1.22778 0.95840 0.83960 0.99155 1.87950 1.91323 1.30477 1.22593 1.22777 0.96255 1.02633 0.80128 1.22851 0.98212 0.88792 1.01056 1.20267 1.00832 0.98335 0.97951 0.91488 0.77295 0.93423 0.94382 0.85586 0.82468 0.82538 0.91025 0.89741 0.89943 0.89726 0.93322 0.89069 0.93239 0.86764 0.93327 0.86697 0.88879 0.93173 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.83 21.83 0.26 -51.16 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.62 29.56 68.60 2.03 43.65 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.57 -33.39 9.54 24.83 0.24 -33.16 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.54 32.48 7.75 86.36 0.67 33.15 16 10 O -0.63 -43.98 15.02 -4.32 -0.06 -44.05 16 11 N -0.75 -35.94 5.54 -471.14 -2.61 -38.56 16 12 C 0.17 7.43 5.80 85.63 0.50 7.93 16 13 C -0.06 -1.99 5.25 -19.88 -0.10 -2.09 16 14 C -0.15 -4.16 9.70 22.28 0.22 -3.95 16 15 C -0.07 -1.51 10.04 22.25 0.22 -1.28 16 16 C -0.20 -4.01 9.04 22.37 0.20 -3.81 16 17 C 0.13 3.27 6.69 22.51 0.15 3.42 16 18 O -0.32 -7.46 10.08 -92.39 -0.93 -8.39 16 19 C 0.06 0.83 4.93 71.98 0.36 1.18 16 20 C 0.06 0.69 5.38 86.30 0.46 1.16 16 21 N -0.55 -8.56 4.61 -895.21 -4.12 -12.68 16 22 C 0.02 0.31 5.60 86.32 0.48 0.79 16 23 C 0.06 0.91 7.01 72.02 0.50 1.41 16 24 O -0.40 -7.43 10.83 -148.98 -1.61 -9.04 16 25 C 0.06 0.87 7.01 72.01 0.50 1.37 16 26 C 0.02 0.24 5.47 86.31 0.47 0.71 16 27 C -0.15 -4.88 9.64 22.37 0.22 -4.67 16 28 H 0.28 15.57 8.29 -92.71 -0.77 14.80 16 29 H 0.39 16.77 8.44 -92.71 -0.78 15.99 16 30 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 31 H 0.04 1.74 8.08 -2.38 -0.02 1.72 16 32 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 35 H 0.07 0.83 6.28 -2.39 -0.01 0.82 16 36 H 0.08 0.86 7.65 -2.39 -0.02 0.85 16 37 H 0.08 0.63 7.99 -2.39 -0.02 0.61 16 38 H 0.08 1.10 7.86 -2.39 -0.02 1.08 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 1.19 8.02 -2.39 -0.02 1.18 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.03 6.74 -2.39 -0.02 1.01 16 46 H 0.05 0.57 8.13 -2.38 -0.02 0.55 16 47 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -82.20 387.73 -1.30 -83.51 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.20 Total: 32.54 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.56 Total: 4.17 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -6.48 Total: -102.39 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -2.61 Total: -61.48 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -82.20 -1.30 -83.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019832924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.762 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds