Wall clock time and date at job start Tue Mar 31 2020 17:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47274 * 270.26965 * 3 2 1 5 5 H 1.48499 * 109.47538 * 30.27280 * 3 2 1 6 6 H 1.48505 * 109.47010 * 150.27433 * 3 2 1 7 7 C 1.38624 * 119.99338 * 180.27184 * 2 1 3 8 8 H 1.08006 * 119.99533 * 179.72864 * 7 2 1 9 9 O 1.34812 * 120.00457 * 359.72498 * 7 2 1 10 10 C 1.35785 * 116.99885 * 174.96300 * 9 7 2 11 11 C 1.38906 * 119.99598 * 185.07567 * 10 9 7 12 12 C 1.38015 * 119.99852 * 179.73117 * 11 10 9 13 13 C 1.38907 * 119.99615 * 0.51603 * 12 11 10 14 14 N 1.40028 * 119.99656 * 179.77681 * 13 12 11 15 15 C 1.34775 * 119.99741 * 215.10668 * 14 13 12 16 16 O 1.21597 * 120.00267 * 355.49436 * 15 14 13 17 17 N 1.34781 * 120.00304 * 175.49159 * 15 14 13 18 18 C 1.46497 * 120.00256 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47012 * 180.02562 * 18 17 15 20 20 H 1.08997 * 109.47448 * 54.99977 * 19 18 17 21 21 C 1.53003 * 109.47073 * 294.99784 * 19 18 17 22 22 C 1.52997 * 109.47073 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47097 * 60.00387 * 22 21 19 24 24 C 1.53000 * 109.47070 * 299.99455 * 23 22 21 25 25 C 1.52997 * 109.47097 * 175.00171 * 19 18 17 26 26 H 1.09000 * 109.47835 * 59.99804 * 25 19 18 27 27 O 1.42900 * 109.47000 * 299.99661 * 25 19 18 28 28 C 1.38912 * 120.00289 * 359.75057 * 13 12 11 29 29 C 1.38012 * 119.99817 * 0.02562 * 28 13 12 30 30 H 0.97006 * 119.99374 * 359.72835 * 1 2 3 31 31 H 1.07999 * 120.00134 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.99658 * 180.29456 * 12 11 10 33 33 H 0.96992 * 120.00471 * 35.10488 * 14 13 12 34 34 H 0.96999 * 119.99553 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46981 * 299.99745 * 18 17 15 36 36 H 1.08993 * 109.47003 * 60.00064 * 18 17 15 37 37 H 1.08997 * 109.47140 * 300.00381 * 21 19 18 38 38 H 1.08999 * 109.46708 * 60.00578 * 21 19 18 39 39 H 1.08997 * 109.47448 * 300.00192 * 22 21 19 40 40 H 1.09005 * 109.47077 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47570 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47445 * 60.00036 * 23 22 21 43 43 H 1.08995 * 109.47461 * 300.00571 * 24 23 22 44 44 H 1.08999 * 109.47388 * 179.97438 * 24 23 22 45 45 H 0.96706 * 114.00174 * 179.97438 * 27 25 19 46 46 H 1.07996 * 120.00370 * 180.02562 * 28 13 12 47 47 H 1.07993 * 120.00131 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4916 2.0497 -1.4001 5 1 1.4502 2.6510 0.7058 6 1 3.5503 1.4384 0.6943 7 6 2.0088 -1.2006 -0.0057 8 1 3.0888 -1.2006 -0.0101 9 8 1.3347 -2.3681 -0.0056 10 6 2.0697 -3.5043 -0.1176 11 6 1.4341 -4.7342 -0.2304 12 6 2.1811 -5.8886 -0.3498 13 6 3.5686 -5.8214 -0.3463 14 7 4.3265 -6.9931 -0.4627 15 6 5.4956 -7.1077 0.1979 16 8 5.9325 -6.1645 0.8289 17 7 6.1806 -8.2679 0.1594 18 6 7.4517 -8.3923 0.8770 19 6 8.0183 -9.7984 0.6706 20 1 8.0998 -10.0043 -0.3967 21 6 7.0858 -10.8242 1.3181 22 6 7.6521 -12.2303 1.1112 23 6 9.0370 -12.3223 1.7550 24 6 9.9695 -11.2966 1.1075 25 6 9.4030 -9.8899 1.3149 26 1 9.3216 -9.6841 2.3822 27 8 10.2739 -8.9319 0.7101 28 6 4.2042 -4.5919 -0.2279 29 6 3.4571 -3.4372 -0.1132 30 1 -0.4849 0.8401 0.0040 31 1 0.3554 -4.7869 -0.2287 32 1 1.6869 -6.8444 -0.4423 33 1 4.0102 -7.7221 -1.0187 34 1 5.8323 -9.0202 -0.3442 35 1 8.1587 -7.6563 0.4941 36 1 7.2870 -8.2191 1.9404 37 1 7.0043 -10.6183 2.3854 38 1 6.0993 -10.7590 0.8591 39 1 7.7333 -12.4359 0.0438 40 1 6.9875 -12.9612 1.5721 41 1 9.4407 -13.3239 1.6072 42 1 8.9559 -12.1167 2.8223 43 1 10.0506 -11.5021 0.0401 44 1 10.9560 -11.3617 1.5664 45 1 11.1713 -8.9334 1.0706 46 1 5.2829 -4.5396 -0.2256 47 1 3.9512 -2.4814 -0.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077671898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:15 Heat of formation + Delta-G solvation = -93.965370 kcal Electronic energy + Delta-G solvation = -27826.144464 eV Core-core repulsion = 23781.041996 eV Total energy + Delta-G solvation = -4045.102467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41075 -39.62484 -38.63363 -36.65215 -36.02336 -34.85128 -33.86699 -32.14560 -31.38923 -30.12061 -30.09388 -27.85994 -25.79052 -25.07959 -23.14851 -22.35443 -21.83252 -21.31562 -20.56861 -20.19776 -18.46105 -17.83864 -17.66801 -17.30398 -16.44213 -15.73623 -15.66547 -15.22785 -14.93024 -14.50639 -14.47149 -14.40066 -14.13538 -13.74921 -13.56589 -13.52851 -13.42736 -13.37066 -12.79872 -12.57761 -12.44383 -12.29963 -11.91468 -11.67905 -11.52772 -11.46458 -11.41712 -11.17961 -10.98323 -10.93239 -10.69786 -10.65482 -10.38191 -10.21335 -9.87486 -9.60533 -9.11906 -9.05812 -8.61396 -8.11798 -6.83956 -6.38110 -3.95455 2.22295 2.33233 2.79020 3.18051 3.19685 3.24590 3.42607 3.69522 4.03580 4.10158 4.16084 4.33527 4.49040 4.59388 4.65886 4.72075 4.83374 4.85472 4.93137 4.98386 5.16438 5.25835 5.33163 5.33735 5.42385 5.53441 5.58615 5.62726 5.71073 5.74110 5.75798 5.82415 5.88081 5.96120 6.21218 6.27024 6.36476 6.47942 6.76097 6.82040 7.04307 7.18858 7.24638 7.28644 7.42265 7.52408 7.87539 8.07296 8.13846 8.77264 9.08035 9.78310 10.80027 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.001893 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.284383 B =14787.535180 C =15687.703609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.145 3.855 11 C -0.178 4.178 12 C -0.096 4.096 13 C 0.054 3.946 14 N -0.676 5.676 15 C 0.698 3.302 16 O -0.575 6.575 17 N -0.748 5.748 18 C 0.147 3.853 19 C -0.090 4.090 20 H 0.083 0.917 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.151 4.151 25 C 0.113 3.887 26 H 0.059 0.941 27 O -0.564 6.564 28 C -0.064 4.064 29 C -0.219 4.219 30 H 0.269 0.731 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.397 0.603 34 H 0.392 0.608 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.378 0.622 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.700 -26.172 0.907 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.091 3.909 11 C -0.198 4.198 12 C -0.116 4.116 13 C -0.039 4.039 14 N -0.323 5.323 15 C 0.399 3.601 16 O -0.451 6.451 17 N -0.405 5.405 18 C 0.023 3.977 19 C -0.109 4.109 20 H 0.102 0.898 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.189 4.189 25 C 0.054 3.946 26 H 0.077 0.923 27 O -0.369 6.369 28 C -0.085 4.085 29 C -0.239 4.239 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.226 0.774 46 H 0.145 0.855 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.162 -24.957 1.204 30.313 hybrid contribution 0.719 -0.167 -0.154 0.754 sum 17.881 -25.124 1.049 30.855 Atomic orbital electron populations 1.70055 1.05907 1.27522 1.46519 1.25270 0.95848 0.98783 0.96692 0.85718 0.78981 0.80130 0.78665 1.19928 1.20327 1.19164 1.21329 0.91842 0.80862 1.52480 0.89059 1.83973 1.34264 1.11398 1.78603 1.19408 0.90281 0.88134 0.93099 1.19964 0.99393 0.89835 1.10616 1.20321 0.91402 0.97412 1.02506 1.17042 0.89471 0.84669 1.12693 1.42290 1.21465 1.18462 1.50123 1.15959 0.80760 0.83210 0.80181 1.90939 1.69168 1.37916 1.47087 1.45103 1.24615 1.13869 1.56887 1.21140 0.83837 0.96045 0.96714 1.21372 0.93301 0.94795 1.01428 0.89832 1.21618 0.98408 0.93761 1.01504 1.21578 0.96363 0.96861 1.01185 1.21498 0.95212 0.98832 1.00097 1.22277 0.99122 0.95339 1.02118 1.21716 0.89380 0.87386 0.96156 0.92331 1.86557 1.25344 1.59496 1.65550 1.20898 0.99977 0.90265 0.97313 1.21115 0.93540 0.98781 1.10483 0.92138 0.86118 0.86854 0.76972 0.77438 0.90568 0.91828 0.91293 0.91099 0.91748 0.91562 0.91671 0.91724 0.91030 0.91595 0.77438 0.85549 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.18 9.48 30.87 0.29 -10.89 16 8 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 9 O -0.18 -5.22 9.76 -0.01 0.00 -5.22 16 10 C 0.14 3.61 6.65 -39.09 -0.26 3.35 16 11 C -0.18 -3.81 9.99 -39.42 -0.39 -4.20 16 12 C -0.10 -1.73 9.96 -39.42 -0.39 -2.12 16 13 C 0.05 1.01 6.30 -83.62 -0.53 0.48 16 14 N -0.68 -9.74 5.35 -14.18 -0.08 -9.82 16 15 C 0.70 10.77 8.41 -86.92 -0.73 10.04 16 16 O -0.57 -11.56 13.78 5.28 0.07 -11.49 16 17 N -0.75 -7.97 5.29 -65.23 -0.34 -8.31 16 18 C 0.15 1.52 4.99 -4.04 -0.02 1.50 16 19 C -0.09 -0.63 1.97 -90.62 -0.18 -0.81 16 20 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 21 C -0.12 -0.65 5.08 -26.73 -0.14 -0.79 16 22 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 23 C -0.12 -0.52 5.92 -26.73 -0.16 -0.68 16 24 C -0.15 -0.73 5.55 -26.70 -0.15 -0.87 16 25 C 0.11 0.72 2.91 -26.70 -0.08 0.65 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 O -0.56 -4.30 12.56 -35.23 -0.44 -4.74 16 28 C -0.06 -1.37 8.69 -39.42 -0.34 -1.71 16 29 C -0.22 -5.15 9.16 -39.42 -0.36 -5.51 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.40 4.08 8.84 -40.82 -0.36 3.72 16 34 H 0.39 2.88 7.67 -40.82 -0.31 2.57 16 35 H 0.08 0.97 7.54 -51.93 -0.39 0.58 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.38 1.37 9.08 45.56 0.41 1.78 16 46 H 0.13 2.72 6.22 -52.49 -0.33 2.39 16 47 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -35.81 380.93 -9.13 -44.94 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.13 Total: 9.13 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.69 Total: -11.32 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.34 Total: -43.17 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.37 Total: -21.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.81 -9.13 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077671898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.030 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds