Wall clock time and date at job start Tue Mar 31 2020 17:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47274 * 270.26965 * 3 2 1 5 5 H 1.48499 * 109.47538 * 30.27280 * 3 2 1 6 6 H 1.48505 * 109.47010 * 150.27433 * 3 2 1 7 7 C 1.38624 * 119.99338 * 180.27184 * 2 1 3 8 8 H 1.08006 * 119.99533 * 179.72864 * 7 2 1 9 9 O 1.34812 * 120.00457 * 359.72498 * 7 2 1 10 10 C 1.35785 * 116.99885 * 174.96300 * 9 7 2 11 11 C 1.38906 * 119.99598 * 185.07567 * 10 9 7 12 12 C 1.38015 * 119.99852 * 179.73117 * 11 10 9 13 13 C 1.38907 * 119.99615 * 0.51603 * 12 11 10 14 14 N 1.40028 * 119.99656 * 179.77681 * 13 12 11 15 15 C 1.34775 * 119.99741 * 215.10668 * 14 13 12 16 16 O 1.21597 * 120.00267 * 355.49436 * 15 14 13 17 17 N 1.34781 * 120.00304 * 175.49159 * 15 14 13 18 18 C 1.46497 * 120.00256 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47012 * 180.02562 * 18 17 15 20 20 H 1.08997 * 109.47448 * 54.99977 * 19 18 17 21 21 C 1.53003 * 109.47073 * 294.99784 * 19 18 17 22 22 C 1.52997 * 109.47073 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47097 * 60.00387 * 22 21 19 24 24 C 1.53000 * 109.47070 * 299.99455 * 23 22 21 25 25 C 1.52997 * 109.47097 * 175.00171 * 19 18 17 26 26 H 1.09000 * 109.47835 * 59.99804 * 25 19 18 27 27 O 1.42900 * 109.47000 * 299.99661 * 25 19 18 28 28 C 1.38912 * 120.00289 * 359.75057 * 13 12 11 29 29 C 1.38012 * 119.99817 * 0.02562 * 28 13 12 30 30 H 0.97006 * 119.99374 * 359.72835 * 1 2 3 31 31 H 1.07999 * 120.00134 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.99658 * 180.29456 * 12 11 10 33 33 H 0.96992 * 120.00471 * 35.10488 * 14 13 12 34 34 H 0.96999 * 119.99553 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46981 * 299.99745 * 18 17 15 36 36 H 1.08993 * 109.47003 * 60.00064 * 18 17 15 37 37 H 1.08997 * 109.47140 * 300.00381 * 21 19 18 38 38 H 1.08999 * 109.46708 * 60.00578 * 21 19 18 39 39 H 1.08997 * 109.47448 * 300.00192 * 22 21 19 40 40 H 1.09005 * 109.47077 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47570 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47445 * 60.00036 * 23 22 21 43 43 H 1.08995 * 109.47461 * 300.00571 * 24 23 22 44 44 H 1.08999 * 109.47388 * 179.97438 * 24 23 22 45 45 H 0.96706 * 114.00174 * 179.97438 * 27 25 19 46 46 H 1.07996 * 120.00370 * 180.02562 * 28 13 12 47 47 H 1.07993 * 120.00131 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4916 2.0497 -1.4001 5 1 1.4502 2.6510 0.7058 6 1 3.5503 1.4384 0.6943 7 6 2.0088 -1.2006 -0.0057 8 1 3.0888 -1.2006 -0.0101 9 8 1.3347 -2.3681 -0.0056 10 6 2.0697 -3.5043 -0.1176 11 6 1.4341 -4.7342 -0.2304 12 6 2.1811 -5.8886 -0.3498 13 6 3.5686 -5.8214 -0.3463 14 7 4.3265 -6.9931 -0.4627 15 6 5.4956 -7.1077 0.1979 16 8 5.9325 -6.1645 0.8289 17 7 6.1806 -8.2679 0.1594 18 6 7.4517 -8.3923 0.8770 19 6 8.0183 -9.7984 0.6706 20 1 8.0998 -10.0043 -0.3967 21 6 7.0858 -10.8242 1.3181 22 6 7.6521 -12.2303 1.1112 23 6 9.0370 -12.3223 1.7550 24 6 9.9695 -11.2966 1.1075 25 6 9.4030 -9.8899 1.3149 26 1 9.3216 -9.6841 2.3822 27 8 10.2739 -8.9319 0.7101 28 6 4.2042 -4.5919 -0.2279 29 6 3.4571 -3.4372 -0.1132 30 1 -0.4849 0.8401 0.0040 31 1 0.3554 -4.7869 -0.2287 32 1 1.6869 -6.8444 -0.4423 33 1 4.0102 -7.7221 -1.0187 34 1 5.8323 -9.0202 -0.3442 35 1 8.1587 -7.6563 0.4941 36 1 7.2870 -8.2191 1.9404 37 1 7.0043 -10.6183 2.3854 38 1 6.0993 -10.7590 0.8591 39 1 7.7333 -12.4359 0.0438 40 1 6.9875 -12.9612 1.5721 41 1 9.4407 -13.3239 1.6072 42 1 8.9559 -12.1167 2.8223 43 1 10.0506 -11.5021 0.0401 44 1 10.9560 -11.3617 1.5664 45 1 11.1713 -8.9334 1.0706 46 1 5.2829 -4.5396 -0.2256 47 1 3.9512 -2.4814 -0.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077671898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:14 Heat of formation + Delta-G solvation = -121.031473 kcal Electronic energy + Delta-G solvation = -27827.318138 eV Core-core repulsion = 23781.041996 eV Total energy + Delta-G solvation = -4046.276142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66179 -40.60620 -40.06966 -38.28954 -36.63283 -35.79915 -35.38398 -34.15255 -32.17765 -31.81784 -30.56721 -29.41254 -27.33431 -26.41467 -24.02576 -23.63983 -23.07759 -22.19103 -21.78916 -20.82921 -20.04946 -19.43182 -18.90479 -18.18857 -18.11400 -16.80880 -16.49916 -16.27646 -16.18616 -15.99234 -15.61652 -15.44363 -15.27397 -15.22956 -14.92472 -14.63565 -14.50462 -14.25516 -14.11767 -13.82918 -13.56997 -13.25526 -13.19464 -13.03160 -12.85861 -12.68155 -12.44493 -12.38896 -12.12858 -11.99250 -11.59571 -11.47880 -11.41194 -11.31561 -11.09567 -10.93291 -10.69081 -10.54185 -10.08819 -9.81550 -8.56404 -8.45822 -6.12317 0.54585 0.61038 1.35084 1.43371 1.52103 1.62360 2.10448 2.18834 2.84345 3.16438 3.21435 3.28116 3.53814 3.57120 3.76875 4.00125 4.11505 4.15027 4.17179 4.27425 4.29325 4.40309 4.45699 4.50328 4.55746 4.65930 4.68299 4.73575 4.83815 4.95130 5.01109 5.08645 5.15218 5.17565 5.20508 5.22024 5.31796 5.34348 5.36676 5.42854 5.45836 5.54692 5.64102 5.72575 6.00971 6.04720 6.21294 6.89839 6.98878 7.06438 7.55094 7.78622 8.76810 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.001893 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.284383 B =14787.535180 C =15687.703609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.096 0.904 9 O -0.227 6.227 10 C 0.105 3.895 11 C -0.178 4.178 12 C -0.077 4.077 13 C 0.081 3.919 14 N -0.661 5.661 15 C 0.695 3.305 16 O -0.624 6.624 17 N -0.723 5.723 18 C 0.150 3.850 19 C -0.081 4.081 20 H 0.086 0.914 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.144 4.144 25 C 0.110 3.890 26 H 0.058 0.942 27 O -0.587 6.587 28 C -0.078 4.078 29 C -0.229 4.229 30 H 0.273 0.727 31 H 0.130 0.870 32 H 0.169 0.831 33 H 0.423 0.577 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.393 0.607 46 H 0.122 0.878 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.970 -29.528 0.445 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.113 0.887 9 O -0.134 6.134 10 C 0.054 3.946 11 C -0.198 4.198 12 C -0.097 4.097 13 C -0.013 4.013 14 N -0.311 5.311 15 C 0.395 3.605 16 O -0.504 6.504 17 N -0.380 5.380 18 C 0.025 3.975 19 C -0.100 4.100 20 H 0.105 0.895 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.182 4.182 25 C 0.051 3.949 26 H 0.076 0.924 27 O -0.395 6.395 28 C -0.098 4.098 29 C -0.248 4.248 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.186 0.814 33 H 0.261 0.739 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.243 0.757 46 H 0.140 0.860 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.473 -28.450 0.709 33.929 hybrid contribution 0.498 0.508 -0.017 0.712 sum 18.971 -27.942 0.692 33.781 Atomic orbital electron populations 1.70182 1.07774 1.28728 1.48880 1.26515 0.96896 1.02500 0.95949 0.84625 0.77704 0.74848 0.79278 1.18691 1.19249 1.18259 1.21748 0.92337 0.81655 1.53175 0.88710 1.83933 1.35558 1.12388 1.81529 1.19933 0.91002 0.88461 0.95185 1.20321 1.00355 0.89528 1.09585 1.20748 0.90826 0.98393 0.99756 1.17152 0.90219 0.85103 1.08832 1.42057 1.20849 1.17807 1.50383 1.16178 0.80837 0.83717 0.79769 1.90927 1.70318 1.40006 1.49112 1.44884 1.24008 1.12980 1.56081 1.21137 0.82944 0.97699 0.95674 1.21334 0.93923 0.92829 1.01885 0.89546 1.21610 0.98355 0.93981 1.01070 1.21565 0.96520 0.96080 1.01555 1.21518 0.95034 0.99091 1.00033 1.22210 0.99749 0.94158 1.02038 1.21787 0.88993 0.88237 0.95911 0.92417 1.86516 1.26673 1.60143 1.66176 1.20937 0.99733 0.90903 0.98259 1.21084 0.93373 0.99197 1.11194 0.91813 0.85162 0.81405 0.73867 0.74953 0.93130 0.93013 0.91783 0.90413 0.91352 0.90813 0.90782 0.91700 0.91400 0.90499 0.75679 0.85983 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.16 13.67 21.61 0.30 -56.86 16 2 C -0.02 -1.23 5.49 84.82 0.47 -0.76 16 3 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.41 -25.03 9.48 67.91 0.64 -24.39 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.04 9.76 -22.95 -0.22 -14.26 16 10 C 0.10 5.42 6.65 22.59 0.15 5.57 16 11 C -0.18 -7.48 9.99 22.38 0.22 -7.26 16 12 C -0.08 -2.51 9.96 22.38 0.22 -2.29 16 13 C 0.08 2.82 6.30 38.15 0.24 3.06 16 14 N -0.66 -16.73 5.35 -317.03 -1.69 -18.43 16 15 C 0.69 19.95 8.41 179.05 1.51 21.46 16 16 O -0.62 -24.80 13.78 -4.02 -0.06 -24.86 16 17 N -0.72 -13.61 5.29 -478.53 -2.53 -16.14 16 18 C 0.15 2.93 4.99 86.38 0.43 3.36 16 19 C -0.08 -0.98 1.97 -10.79 -0.02 -1.00 16 20 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 21 C -0.11 -0.97 5.08 30.59 0.16 -0.82 16 22 C -0.12 -0.75 5.92 30.59 0.18 -0.57 16 23 C -0.12 -0.73 5.92 30.59 0.18 -0.55 16 24 C -0.14 -1.06 5.55 30.61 0.17 -0.89 16 25 C 0.11 1.24 2.91 30.61 0.09 1.33 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 O -0.59 -8.42 12.56 -148.98 -1.87 -10.29 16 28 C -0.08 -3.31 8.69 22.38 0.19 -3.12 16 29 C -0.23 -11.15 9.16 22.38 0.20 -10.94 16 30 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 31 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 32 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 33 H 0.42 6.54 8.84 -92.71 -0.82 5.72 16 34 H 0.41 4.49 7.67 -92.71 -0.71 3.78 16 35 H 0.05 1.28 7.54 -2.38 -0.02 1.26 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.56 7.18 -2.39 -0.02 0.54 16 39 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 42 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.39 2.48 9.08 -74.05 -0.67 1.81 16 46 H 0.12 5.32 6.22 -2.91 -0.02 5.30 16 47 H 0.11 5.78 5.63 -2.91 -0.02 5.76 16 Total: -1.00 -83.54 380.93 -0.19 -83.74 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -1.18 Total: 28.20 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 5.04 Total: -17.80 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -3.93 Total: -91.43 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.15 Total: -49.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -83.54 -0.19 -83.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077671898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.294 kcal (2) G-P(sol) polarization free energy of solvation -83.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds