Wall clock time and date at job start Tue Mar 31 2020 17:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99527 * 2 1 4 4 H 1.48497 * 109.46943 * 270.00063 * 3 2 1 5 5 H 1.48504 * 109.46979 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.46932 * 149.99875 * 3 2 1 7 7 C 1.38803 * 120.00764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00753 * 190.05664 * 7 2 1 9 9 N 1.36945 * 119.99723 * 10.05766 * 7 2 1 10 10 C 1.46962 * 120.59417 * 211.71065 * 9 7 2 11 11 C 1.53368 * 108.63509 * 235.20173 * 10 9 7 12 12 N 1.46968 * 108.63402 * 310.57675 * 11 10 9 13 13 C 1.34775 * 120.59045 * 235.20177 * 12 11 10 14 14 O 1.21286 * 120.00541 * 4.77999 * 13 12 11 15 15 C 1.50699 * 119.99649 * 184.77948 * 13 12 11 16 16 H 1.08990 * 109.47369 * 335.25114 * 15 13 12 17 17 C 1.53005 * 109.46946 * 95.25355 * 15 13 12 18 18 C 1.53000 * 109.47022 * 59.99876 * 17 15 13 19 19 C 1.52999 * 109.47320 * 60.00372 * 18 17 15 20 20 C 1.52998 * 109.46839 * 299.99524 * 19 18 17 21 21 C 1.53004 * 109.47217 * 60.00414 * 20 19 18 22 22 H 1.09000 * 109.47095 * 59.99657 * 21 20 19 23 23 C 1.52998 * 109.47217 * 179.97438 * 21 20 19 24 24 F 1.39903 * 109.47166 * 174.26262 * 23 21 20 25 25 F 1.39896 * 109.47448 * 54.26296 * 23 21 20 26 26 F 1.39898 * 109.47310 * 294.26103 * 23 21 20 27 27 C 1.46961 * 118.81152 * 55.47666 * 12 11 10 28 28 C 1.46958 * 120.59515 * 31.68178 * 9 7 2 29 29 H 0.96995 * 120.00476 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.61694 * 115.45502 * 10 9 7 31 31 H 1.08998 * 109.61032 * 354.94389 * 10 9 7 32 32 H 1.08998 * 109.61369 * 190.83050 * 11 10 9 33 33 H 1.09004 * 109.75182 * 70.40167 * 11 10 9 34 34 H 1.09000 * 109.47191 * 179.97438 * 17 15 13 35 35 H 1.08995 * 109.46996 * 299.99531 * 17 15 13 36 36 H 1.09004 * 109.46690 * 179.97438 * 18 17 15 37 37 H 1.08990 * 109.47204 * 299.99986 * 18 17 15 38 38 H 1.09000 * 109.47335 * 59.99782 * 19 18 17 39 39 H 1.09004 * 109.47272 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47367 * 300.00238 * 20 19 18 41 41 H 1.08996 * 109.47463 * 180.02562 * 20 19 18 42 42 H 1.08993 * 109.61241 * 64.26687 * 27 12 11 43 43 H 1.09002 * 109.60724 * 184.78409 * 27 12 11 44 44 H 1.09000 * 109.61628 * 244.54292 * 28 9 7 45 45 H 1.09000 * 109.61234 * 5.05420 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0779 -1.2091 0.1638 9 7 1.3415 -2.3790 -0.2061 10 6 1.8005 -3.6217 0.4301 11 6 2.0225 -4.6773 -0.6602 12 7 0.8325 -4.7202 -1.5216 13 6 0.1743 -5.8786 -1.7249 14 8 0.5096 -6.8796 -1.1277 15 6 -0.9784 -5.9300 -2.6942 16 1 -1.4142 -4.9360 -2.7936 17 6 -0.4763 -6.4056 -4.0590 18 6 0.1355 -7.8010 -3.9194 19 6 -0.9253 -8.7732 -3.3993 20 6 -1.4274 -8.2977 -2.0345 21 6 -2.0392 -6.9023 -2.1740 22 1 -2.8730 -6.9396 -2.8752 23 6 -2.5419 -6.4271 -0.8094 24 9 -2.9816 -5.1027 -0.9097 25 9 -1.5021 -6.5038 0.1233 26 9 -3.6019 -7.2400 -0.3938 27 6 0.3768 -3.4785 -2.1621 28 6 0.1515 -2.4219 -1.0673 29 1 -0.4850 0.8400 -0.0004 30 1 1.0450 -3.9742 1.1320 31 1 2.7365 -3.4385 0.9578 32 1 2.1756 -5.6530 -0.1990 33 1 2.8962 -4.4133 -1.2562 34 1 -1.3101 -6.4433 -4.7600 35 1 0.2794 -5.7130 -4.4296 36 1 0.4928 -8.1400 -4.8918 37 1 0.9691 -7.7638 -3.2183 38 1 -1.7590 -8.8105 -4.1004 39 1 -0.4896 -9.7675 -3.3002 40 1 -0.5937 -8.2605 -1.3334 41 1 -2.1828 -8.9905 -1.6637 42 1 1.1354 -3.1281 -2.8619 43 1 -0.5574 -3.6623 -2.6930 44 1 -0.7216 -2.6889 -0.4720 45 1 -0.0016 -1.4462 -1.5285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134732939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:19 Heat of formation + Delta-G solvation = -162.866049 kcal Electronic energy + Delta-G solvation = -32297.353070 eV Core-core repulsion = 27707.406105 eV Total energy + Delta-G solvation = -4589.946965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.90463 -47.43584 -47.28222 -40.59832 -37.86826 -36.29835 -33.94855 -32.07373 -31.78919 -30.74894 -30.08224 -27.01691 -25.76111 -24.10485 -23.25989 -22.64703 -21.92258 -21.08032 -19.99077 -18.53940 -18.10628 -18.02724 -17.50109 -17.11982 -16.19115 -15.37409 -15.25070 -14.96234 -14.68415 -14.30447 -14.19000 -13.91155 -13.80434 -13.76387 -13.68011 -13.48075 -13.46664 -13.37028 -13.27944 -13.17425 -12.69356 -12.47309 -12.33300 -12.03964 -11.83104 -11.54326 -11.35588 -11.14985 -10.96047 -10.85101 -10.73187 -10.47989 -10.41752 -10.32250 -10.20726 -9.96040 -9.83107 -8.92702 -8.58527 -8.24266 -6.66387 -5.85165 -3.35917 2.85937 2.92609 3.32693 3.35125 3.40261 3.41590 3.90566 3.98371 4.15993 4.42321 4.60389 4.65667 4.75966 4.90593 5.00121 5.08950 5.15447 5.22141 5.26614 5.33757 5.40975 5.53499 5.67117 5.73269 5.81444 5.86901 5.93118 5.95939 6.01922 6.06660 6.13885 6.18058 6.20581 6.35818 6.39876 6.56480 6.81136 6.95260 7.24140 7.51311 7.70823 7.90666 8.38516 8.55711 9.12979 9.73356 10.32082 11.21877 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.004006 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.843980 B = 6987.956289 C = 7529.232295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.097 3.903 12 N -0.590 5.590 13 C 0.515 3.485 14 O -0.538 6.538 15 C -0.116 4.116 16 H 0.107 0.893 17 C -0.099 4.099 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.109 4.109 22 H 0.112 0.888 23 C 0.446 3.554 24 F -0.183 7.183 25 F -0.165 7.165 26 F -0.189 7.189 27 C 0.074 3.926 28 C 0.159 3.841 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.131 0.869 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -14.908 -9.321 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.027 4.027 12 N -0.321 5.321 13 C 0.302 3.698 14 O -0.418 6.418 15 C -0.137 4.137 16 H 0.124 0.876 17 C -0.137 4.137 18 C -0.164 4.164 19 C -0.142 4.142 20 C -0.184 4.184 21 C -0.129 4.129 22 H 0.131 0.869 23 C 0.391 3.609 24 F -0.164 7.164 25 F -0.146 7.146 26 F -0.171 7.171 27 C -0.050 4.050 28 C 0.032 3.968 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.950 -15.224 -8.935 18.089 hybrid contribution 0.056 1.227 0.213 1.246 sum -3.893 -13.998 -8.722 16.946 Atomic orbital electron populations 1.69938 1.05286 1.25678 1.53969 1.25192 0.95428 0.98480 1.00192 0.86229 0.79050 0.83386 0.77697 1.21351 1.21640 1.20378 1.19208 0.90822 0.83668 1.44809 0.91600 1.43931 1.31425 1.03884 1.52103 1.21296 0.98476 0.87154 0.92615 1.22195 0.86157 1.00936 0.93419 1.48044 1.28831 1.07986 1.47246 1.20180 0.83849 0.83303 0.82424 1.90432 1.67477 1.33754 1.50149 1.21462 0.94823 1.00609 0.96782 0.87553 1.21377 1.01230 0.97632 0.93477 1.21633 0.99235 0.94189 1.01369 1.21352 0.98238 0.98813 0.95787 1.22210 1.03637 0.91616 1.00945 1.22286 0.99943 0.98919 0.91772 0.86947 1.20672 0.75621 0.75217 0.89342 1.93205 1.89975 1.36815 1.96413 1.93281 1.57183 1.95815 1.68326 1.93143 1.58739 1.73161 1.92013 1.22922 0.98702 0.85497 0.97861 1.21283 0.88755 0.97066 0.89706 0.93423 0.95798 0.91636 0.89954 0.92071 0.90613 0.90751 0.91858 0.90567 0.92485 0.91544 0.85194 0.91858 0.91713 0.90985 0.95763 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.00 55.49 0.61 -24.83 16 2 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 3 Si 0.91 21.06 29.57 -169.99 -5.03 16.03 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 N -0.59 -14.39 2.96 -171.78 -0.51 -14.90 16 10 C 0.13 2.79 6.67 -3.60 -0.02 2.76 16 11 C 0.10 1.76 6.60 -3.60 -0.02 1.73 16 12 N -0.59 -10.34 2.94 -172.22 -0.51 -10.85 16 13 C 0.51 8.28 4.55 -10.99 -0.05 8.23 16 14 O -0.54 -9.47 9.85 5.55 0.05 -9.41 16 15 C -0.12 -1.47 1.92 -91.76 -0.18 -1.64 16 16 H 0.11 1.35 5.08 -51.93 -0.26 1.08 16 17 C -0.10 -1.00 5.44 -26.73 -0.15 -1.14 16 18 C -0.13 -1.29 5.64 -26.73 -0.15 -1.44 16 19 C -0.10 -1.00 5.92 -26.73 -0.16 -1.16 16 20 C -0.15 -1.73 4.66 -26.73 -0.12 -1.85 16 21 C -0.11 -1.32 2.06 -90.61 -0.19 -1.50 16 22 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 23 C 0.45 6.65 2.63 37.16 0.10 6.75 16 24 F -0.18 -2.95 16.58 2.25 0.04 -2.91 16 25 F -0.16 -2.95 13.50 2.25 0.03 -2.92 16 26 F -0.19 -2.70 17.02 2.25 0.04 -2.66 16 27 C 0.07 1.31 6.52 -3.37 -0.02 1.29 16 28 C 0.16 3.61 5.47 -3.37 -0.02 3.59 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 32 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.97 6.45 -51.93 -0.33 0.63 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 1.91 4.59 -52.15 -0.24 1.67 16 41 H 0.06 0.69 7.96 -51.93 -0.41 0.27 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.08 5.19 -51.93 -0.27 0.81 16 44 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 2.56 6.01 -51.93 -0.31 2.25 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -29.66 345.24 -7.66 -37.32 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.38 Total: 1.16 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.21 Total: 8.77 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.40 Total: -50.58 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.05 Total: -9.41 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 0.11 Total: -8.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.66 -7.66 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134732939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.544 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds