Wall clock time and date at job start Tue Mar 31 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48506 * 109.46972 * 269.99863 * 3 2 1 5 5 H 1.48497 * 109.47338 * 30.00102 * 3 2 1 6 6 H 1.48505 * 109.46877 * 150.00229 * 3 2 1 7 7 C 1.38653 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99836 * 174.97583 * 9 7 2 11 11 C 1.38952 * 120.02836 * 185.36965 * 10 9 7 12 12 C 1.38131 * 120.06614 * 180.02562 * 11 10 9 13 13 C 1.38205 * 120.13660 * 359.97438 * 12 11 10 14 14 C 1.38913 * 120.06961 * 0.02562 * 13 12 11 15 15 N 1.39937 * 120.03528 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00268 * 35.12183 * 15 14 13 17 17 O 1.21592 * 119.99960 * 355.50715 * 16 15 14 18 18 N 1.34778 * 120.00310 * 175.50202 * 16 15 14 19 19 C 1.46500 * 120.00177 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.46881 * 179.97438 * 19 18 16 21 21 H 1.09006 * 109.47379 * 304.99643 * 20 19 18 22 22 C 1.52997 * 109.47421 * 65.00002 * 20 19 18 23 23 C 1.52999 * 109.47248 * 179.97438 * 22 20 19 24 24 C 1.52991 * 109.47361 * 299.99896 * 23 22 20 25 25 C 1.53008 * 109.47103 * 60.00055 * 24 23 22 26 26 C 1.52999 * 109.46967 * 300.00186 * 25 24 23 27 27 H 1.09001 * 109.46769 * 300.00171 * 26 25 24 28 28 O 1.42896 * 109.47081 * 180.02562 * 26 25 24 29 29 C 1.38733 * 120.03433 * 5.62290 * 10 9 7 30 30 H 0.96992 * 119.99821 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.96917 * 0.02562 * 11 10 9 32 32 H 1.07998 * 119.92740 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.96148 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99785 * 215.12814 * 15 14 13 35 35 H 0.97000 * 119.99552 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.46741 * 60.00224 * 19 18 16 37 37 H 1.09001 * 109.46890 * 299.99930 * 19 18 16 38 38 H 1.08998 * 109.47223 * 299.99931 * 22 20 19 39 39 H 1.09001 * 109.47483 * 59.99810 * 22 20 19 40 40 H 1.09009 * 109.46948 * 60.00307 * 23 22 20 41 41 H 1.09003 * 109.47390 * 179.97438 * 23 22 20 42 42 H 1.09004 * 109.47531 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47666 * 299.99933 * 24 23 22 44 44 H 1.08998 * 109.47009 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46856 * 60.00222 * 25 24 23 46 46 H 0.96698 * 114.00399 * 59.99786 * 28 26 25 47 47 H 1.07996 * 120.06974 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1070 11 6 1.4353 -4.7350 -0.2258 12 6 2.1827 -5.8917 -0.3337 13 6 3.5633 -5.8290 -0.3243 14 6 4.2037 -4.6020 -0.2058 15 7 5.6016 -4.5395 -0.1959 16 6 6.3199 -5.3952 -0.9497 17 8 5.7578 -6.2739 -1.5747 18 7 7.6610 -5.2771 -1.0109 19 6 8.4417 -6.2069 -1.8308 20 6 9.9271 -5.8555 -1.7261 21 1 10.0730 -4.8097 -1.9967 22 6 10.4050 -6.0824 -0.2906 23 6 11.8906 -5.7316 -0.1861 24 6 12.6929 -6.6216 -1.1373 25 6 12.2150 -6.3948 -2.5730 26 6 10.7294 -6.7456 -2.6775 27 1 10.5832 -7.7912 -2.4067 28 8 10.2832 -6.5343 -4.0184 29 6 3.4556 -3.4389 -0.0920 30 1 -0.4849 0.8400 0.0004 31 1 0.3567 -4.7872 -0.2339 32 1 1.6872 -6.8467 -0.4263 33 1 4.1450 -6.7352 -0.4084 34 1 6.0537 -3.8803 0.3537 35 1 8.1094 -4.5763 -0.5120 36 1 8.1229 -6.1303 -2.8703 37 1 8.2830 -7.2253 -1.4761 38 1 9.8331 -5.4486 0.3872 39 1 10.2591 -7.1282 -0.0200 40 1 12.0368 -4.6858 -0.4568 41 1 12.2310 -5.8928 0.8368 42 1 13.7512 -6.3714 -1.0633 43 1 12.5467 -7.6673 -0.8667 44 1 12.7863 -7.0292 -3.2506 45 1 12.3613 -5.3491 -2.8437 46 1 10.7493 -7.0676 -4.6767 47 1 3.9511 -2.4841 0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265867963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:57 Heat of formation + Delta-G solvation = -94.867868 kcal Electronic energy + Delta-G solvation = -28079.923988 eV Core-core repulsion = 24034.782386 eV Total energy + Delta-G solvation = -4045.141603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45005 -39.63850 -38.63836 -36.58411 -36.01008 -34.87114 -34.13730 -32.20787 -31.48662 -30.10921 -29.20895 -28.37082 -25.84193 -25.20968 -23.17105 -22.24741 -21.72945 -21.45148 -20.55671 -20.19142 -18.55216 -17.80788 -17.66155 -17.32199 -16.06848 -15.69842 -15.58531 -15.17397 -14.89098 -14.81935 -14.55082 -14.37129 -14.17050 -13.90996 -13.81617 -13.52645 -13.43410 -13.35509 -12.92042 -12.48428 -12.41004 -12.24078 -11.90422 -11.71320 -11.50864 -11.43487 -11.16435 -11.12023 -10.99798 -10.92020 -10.72704 -10.64264 -10.43747 -10.20079 -9.92581 -9.53494 -9.39402 -9.07818 -8.76272 -7.64998 -7.08150 -6.41035 -4.00576 2.12934 2.46902 2.74449 3.13163 3.14971 3.18806 3.39461 3.70826 3.98750 4.11052 4.16182 4.31376 4.50128 4.60665 4.66773 4.73180 4.84454 4.86434 4.94607 4.99827 5.12583 5.26841 5.34275 5.35693 5.43195 5.54526 5.60241 5.64460 5.71959 5.74653 5.77486 5.89021 5.96945 6.07906 6.15708 6.30687 6.32786 6.44925 6.63297 6.86683 7.06723 7.17076 7.26597 7.34983 7.40713 7.48808 7.89683 8.03448 8.10027 8.71436 9.04505 9.75901 10.77242 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.002263 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.139635 B =12368.150221 C =13553.187526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.168 3.832 11 C -0.201 4.201 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.197 3.803 15 N -0.683 5.683 16 C 0.703 3.297 17 O -0.571 6.571 18 N -0.747 5.747 19 C 0.147 3.853 20 C -0.091 4.091 21 H 0.084 0.916 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.151 4.151 26 C 0.114 3.886 27 H 0.058 0.942 28 O -0.563 6.563 29 C -0.258 4.258 30 H 0.269 0.731 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.401 0.599 35 H 0.394 0.606 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.378 0.622 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.399 -11.954 -1.247 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.103 3.897 15 N -0.330 5.330 16 C 0.403 3.597 17 O -0.447 6.447 18 N -0.403 5.403 19 C 0.023 3.977 20 C -0.110 4.110 21 H 0.103 0.897 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.189 4.189 26 C 0.054 3.946 27 H 0.076 0.924 28 O -0.369 6.369 29 C -0.280 4.280 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.227 0.773 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.225 0.775 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.097 -12.140 -1.530 27.920 hybrid contribution 1.474 1.207 0.190 1.914 sum 26.570 -10.933 -1.340 28.763 Atomic orbital electron populations 1.70038 1.05897 1.27543 1.46383 1.25265 0.95831 0.98739 0.96708 0.85732 0.78835 0.80279 0.78651 1.19951 1.20297 1.19338 1.21264 0.91644 0.80915 1.52909 0.89296 1.84007 1.33936 1.11305 1.78883 1.19050 0.89360 0.88167 0.92034 1.20251 0.99689 0.90304 1.11847 1.20557 0.93147 0.96863 0.97820 1.20719 0.94248 0.96391 1.11116 1.17191 0.79829 0.93682 0.99004 1.42556 1.05513 1.37543 1.47344 1.15896 0.81326 0.82345 0.80122 1.90933 1.69635 1.35594 1.48507 1.45120 1.05131 1.36732 1.53326 1.21152 0.88270 0.92412 0.95862 1.21381 0.93882 1.01023 0.94707 0.89733 1.21617 0.95953 1.02530 0.95176 1.21580 0.94848 1.00008 0.99593 1.21496 0.99640 1.00253 0.94210 1.22271 0.96183 1.02840 0.97595 1.21694 0.92214 0.98098 0.82569 0.92378 1.86564 1.64701 1.69177 1.16459 1.20788 0.93947 0.97064 1.16218 0.92089 0.86451 0.86676 0.85705 0.76429 0.77256 0.90484 0.91818 0.91079 0.91329 0.91694 0.91553 0.91664 0.91756 0.91592 0.90992 0.77455 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 9 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 10 C 0.17 4.16 6.64 -39.13 -0.26 3.90 16 11 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 12 C -0.06 -1.28 10.03 -39.63 -0.40 -1.67 16 13 C -0.20 -4.10 8.69 -39.34 -0.34 -4.45 16 14 C 0.20 3.92 6.29 -83.72 -0.53 3.39 16 15 N -0.68 -10.79 5.34 -14.24 -0.08 -10.87 16 16 C 0.70 11.20 8.41 -86.92 -0.73 10.47 16 17 O -0.57 -11.37 13.78 5.28 0.07 -11.30 16 18 N -0.75 -8.39 5.29 -65.23 -0.34 -8.74 16 19 C 0.15 1.55 4.99 -4.04 -0.02 1.53 16 20 C -0.09 -0.67 1.97 -90.62 -0.18 -0.85 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.12 -0.68 5.08 -26.73 -0.14 -0.82 16 23 C -0.12 -0.61 5.92 -26.74 -0.16 -0.77 16 24 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 25 C -0.15 -0.77 5.55 -26.73 -0.15 -0.92 16 26 C 0.11 0.75 2.90 -26.73 -0.08 0.67 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 O -0.56 -4.45 12.56 -35.23 -0.44 -4.90 16 29 C -0.26 -5.73 9.08 -39.21 -0.36 -6.09 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.13 2.50 6.22 -52.49 -0.33 2.18 16 34 H 0.40 4.94 8.84 -40.82 -0.36 4.58 16 35 H 0.39 3.25 7.67 -40.82 -0.31 2.93 16 36 H 0.08 1.01 7.53 -51.93 -0.39 0.62 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.41 7.18 -51.93 -0.37 0.03 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.38 1.44 9.08 45.56 0.41 1.85 16 47 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -35.35 380.93 -9.13 -44.48 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.13 Total: 10.76 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.69 Total: -10.86 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.34 Total: -44.35 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.37 Total: -21.32 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.35 -9.13 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265867963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.392 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds