Wall clock time and date at job start Tue Mar 31 2020 17:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48506 * 109.46972 * 269.99863 * 3 2 1 5 5 H 1.48497 * 109.47338 * 30.00102 * 3 2 1 6 6 H 1.48505 * 109.46877 * 150.00229 * 3 2 1 7 7 C 1.38653 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99836 * 174.97583 * 9 7 2 11 11 C 1.38952 * 120.02836 * 185.36965 * 10 9 7 12 12 C 1.38131 * 120.06614 * 180.02562 * 11 10 9 13 13 C 1.38205 * 120.13660 * 359.97438 * 12 11 10 14 14 C 1.38913 * 120.06961 * 0.02562 * 13 12 11 15 15 N 1.39937 * 120.03528 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00268 * 35.12183 * 15 14 13 17 17 O 1.21592 * 119.99960 * 355.50715 * 16 15 14 18 18 N 1.34778 * 120.00310 * 175.50202 * 16 15 14 19 19 C 1.46500 * 120.00177 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.46881 * 179.97438 * 19 18 16 21 21 H 1.09006 * 109.47379 * 304.99643 * 20 19 18 22 22 C 1.52997 * 109.47421 * 65.00002 * 20 19 18 23 23 C 1.52999 * 109.47248 * 179.97438 * 22 20 19 24 24 C 1.52991 * 109.47361 * 299.99896 * 23 22 20 25 25 C 1.53008 * 109.47103 * 60.00055 * 24 23 22 26 26 C 1.52999 * 109.46967 * 300.00186 * 25 24 23 27 27 H 1.09001 * 109.46769 * 300.00171 * 26 25 24 28 28 O 1.42896 * 109.47081 * 180.02562 * 26 25 24 29 29 C 1.38733 * 120.03433 * 5.62290 * 10 9 7 30 30 H 0.96992 * 119.99821 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.96917 * 0.02562 * 11 10 9 32 32 H 1.07998 * 119.92740 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.96148 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99785 * 215.12814 * 15 14 13 35 35 H 0.97000 * 119.99552 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.46741 * 60.00224 * 19 18 16 37 37 H 1.09001 * 109.46890 * 299.99930 * 19 18 16 38 38 H 1.08998 * 109.47223 * 299.99931 * 22 20 19 39 39 H 1.09001 * 109.47483 * 59.99810 * 22 20 19 40 40 H 1.09009 * 109.46948 * 60.00307 * 23 22 20 41 41 H 1.09003 * 109.47390 * 179.97438 * 23 22 20 42 42 H 1.09004 * 109.47531 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47666 * 299.99933 * 24 23 22 44 44 H 1.08998 * 109.47009 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46856 * 60.00222 * 25 24 23 46 46 H 0.96698 * 114.00399 * 59.99786 * 28 26 25 47 47 H 1.07996 * 120.06974 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1070 11 6 1.4353 -4.7350 -0.2258 12 6 2.1827 -5.8917 -0.3337 13 6 3.5633 -5.8290 -0.3243 14 6 4.2037 -4.6020 -0.2058 15 7 5.6016 -4.5395 -0.1959 16 6 6.3199 -5.3952 -0.9497 17 8 5.7578 -6.2739 -1.5747 18 7 7.6610 -5.2771 -1.0109 19 6 8.4417 -6.2069 -1.8308 20 6 9.9271 -5.8555 -1.7261 21 1 10.0730 -4.8097 -1.9967 22 6 10.4050 -6.0824 -0.2906 23 6 11.8906 -5.7316 -0.1861 24 6 12.6929 -6.6216 -1.1373 25 6 12.2150 -6.3948 -2.5730 26 6 10.7294 -6.7456 -2.6775 27 1 10.5832 -7.7912 -2.4067 28 8 10.2832 -6.5343 -4.0184 29 6 3.4556 -3.4389 -0.0920 30 1 -0.4849 0.8400 0.0004 31 1 0.3567 -4.7872 -0.2339 32 1 1.6872 -6.8467 -0.4263 33 1 4.1450 -6.7352 -0.4084 34 1 6.0537 -3.8803 0.3537 35 1 8.1094 -4.5763 -0.5120 36 1 8.1229 -6.1303 -2.8703 37 1 8.2830 -7.2253 -1.4761 38 1 9.8331 -5.4486 0.3872 39 1 10.2591 -7.1282 -0.0200 40 1 12.0368 -4.6858 -0.4568 41 1 12.2310 -5.8928 0.8368 42 1 13.7512 -6.3714 -1.0633 43 1 12.5467 -7.6673 -0.8667 44 1 12.7863 -7.0292 -3.2506 45 1 12.3613 -5.3491 -2.8437 46 1 10.7493 -7.0676 -4.6767 47 1 3.9511 -2.4841 0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265867963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:56 Heat of formation + Delta-G solvation = -120.941603 kcal Electronic energy + Delta-G solvation = -28081.054630 eV Core-core repulsion = 24034.782386 eV Total energy + Delta-G solvation = -4046.272245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73906 -40.61752 -40.07191 -38.24290 -36.64480 -35.82938 -35.64414 -34.21391 -32.30647 -30.89534 -30.56391 -29.98054 -27.33101 -26.56550 -23.92250 -23.47363 -23.27969 -22.20718 -21.82833 -20.85752 -20.07734 -19.41051 -19.00836 -18.19001 -17.46684 -16.90304 -16.63858 -16.45003 -16.22650 -16.00015 -15.73822 -15.54279 -15.37069 -15.34597 -14.95767 -14.57092 -14.52080 -14.33582 -14.05418 -13.85143 -13.56892 -13.22595 -13.02972 -12.89018 -12.79063 -12.66112 -12.43560 -12.39558 -12.10984 -11.99936 -11.59911 -11.49172 -11.42270 -11.30981 -11.14269 -11.02810 -10.71940 -10.69258 -10.16702 -9.31644 -8.83766 -8.44823 -6.13470 0.46361 0.72841 1.36375 1.46107 1.52731 1.54002 2.05520 2.19041 2.86219 3.12602 3.17977 3.26322 3.52741 3.55797 3.75922 3.99875 4.12939 4.16312 4.26323 4.28577 4.35813 4.39548 4.44511 4.47583 4.55077 4.64957 4.65638 4.73994 4.82280 4.94149 4.99907 5.05109 5.13146 5.17055 5.19026 5.21320 5.30582 5.33676 5.36142 5.41976 5.49909 5.53638 5.69129 5.71711 5.95881 6.03597 6.22789 6.90447 6.94957 6.99586 7.44682 7.79446 8.78262 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.002263 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.139635 B =12368.150221 C =13553.187526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.134 3.866 11 C -0.214 4.214 12 C -0.053 4.053 13 C -0.200 4.200 14 C 0.204 3.796 15 N -0.673 5.673 16 C 0.700 3.300 17 O -0.611 6.611 18 N -0.723 5.723 19 C 0.150 3.850 20 C -0.083 4.083 21 H 0.081 0.919 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.145 4.145 26 C 0.112 3.888 27 H 0.063 0.937 28 O -0.587 6.587 29 C -0.260 4.260 30 H 0.272 0.728 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.394 0.606 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.797 -12.468 -0.913 32.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.133 6.133 10 C 0.083 3.917 11 C -0.234 4.234 12 C -0.071 4.071 13 C -0.221 4.221 14 C 0.108 3.892 15 N -0.321 5.321 16 C 0.401 3.599 17 O -0.490 6.490 18 N -0.380 5.380 19 C 0.026 3.974 20 C -0.102 4.102 21 H 0.100 0.900 22 C -0.150 4.150 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.182 4.182 26 C 0.052 3.948 27 H 0.080 0.920 28 O -0.396 6.396 29 C -0.282 4.282 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.257 0.743 35 H 0.249 0.751 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.244 0.756 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 28.595 -12.680 -1.181 31.303 hybrid contribution 0.540 1.076 0.031 1.204 sum 29.135 -11.604 -1.150 31.382 Atomic orbital electron populations 1.70189 1.08040 1.28769 1.48819 1.26596 0.96855 1.02745 0.95896 0.84587 0.77982 0.74563 0.79081 1.19186 1.19684 1.17219 1.21809 0.92525 0.81349 1.53180 0.87969 1.83979 1.35562 1.12434 1.81281 1.19571 0.90677 0.88049 0.93423 1.20478 1.00217 0.90349 1.12320 1.20935 0.93029 0.97511 0.95667 1.21006 0.94627 0.96714 1.09716 1.17192 0.81674 0.92838 0.97474 1.42386 1.04016 1.38110 1.47618 1.16057 0.82497 0.81729 0.79659 1.90904 1.70778 1.37268 1.50083 1.44964 1.03471 1.36940 1.52633 1.21180 0.90048 0.92092 0.94057 1.21347 0.91614 1.01027 0.96206 0.90045 1.21605 0.96800 1.02675 0.93896 1.21571 0.94014 1.00071 1.00190 1.21511 1.00020 1.00410 0.93612 1.22209 0.95058 1.02619 0.98363 1.21761 0.93003 0.98080 0.81921 0.91955 1.86522 1.65643 1.69960 1.17433 1.20804 0.93204 0.97967 1.16239 0.91876 0.86261 0.82924 0.84943 0.74276 0.75139 0.93088 0.92199 0.90726 0.91296 0.91725 0.90784 0.90863 0.91380 0.90323 0.91720 0.75635 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.47 13.67 21.61 0.30 -56.18 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 42.40 29.55 68.60 2.03 44.42 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.41 -23.85 9.49 67.92 0.64 -23.21 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.65 9.76 -22.78 -0.22 -13.87 16 10 C 0.13 6.82 6.64 22.56 0.15 6.97 16 11 C -0.21 -9.53 9.99 22.42 0.22 -9.31 16 12 C -0.05 -2.00 10.03 22.24 0.22 -1.77 16 13 C -0.20 -7.71 8.69 22.42 0.19 -7.52 16 14 C 0.20 7.86 6.29 38.13 0.24 8.10 16 15 N -0.67 -20.02 5.34 -317.23 -1.69 -21.71 16 16 C 0.70 21.16 8.41 179.05 1.51 22.66 16 17 O -0.61 -23.65 13.78 -4.01 -0.06 -23.71 16 18 N -0.72 -14.90 5.29 -478.54 -2.53 -17.43 16 19 C 0.15 2.99 4.99 86.38 0.43 3.42 16 20 C -0.08 -1.08 1.97 -10.80 -0.02 -1.10 16 21 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 22 C -0.11 -1.06 5.08 30.59 0.16 -0.90 16 23 C -0.12 -0.89 5.92 30.59 0.18 -0.71 16 24 C -0.12 -0.78 5.92 30.59 0.18 -0.60 16 25 C -0.14 -1.16 5.55 30.60 0.17 -0.99 16 26 C 0.11 1.29 2.90 30.59 0.09 1.38 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 O -0.59 -8.66 12.56 -148.98 -1.87 -10.53 16 29 C -0.26 -11.56 9.08 22.51 0.20 -11.36 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.13 5.03 6.22 -2.91 -0.02 5.01 16 34 H 0.42 9.33 8.84 -92.71 -0.82 8.51 16 35 H 0.41 5.70 7.67 -92.71 -0.71 4.99 16 36 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 0.65 7.18 -2.39 -0.02 0.63 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.39 2.54 9.08 -74.06 -0.67 1.86 16 47 H 0.13 5.62 5.64 -2.91 -0.02 5.60 16 Total: -1.00 -79.64 380.93 -0.19 -79.84 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.18 Total: 34.97 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 5.04 Total: -15.81 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.93 Total: -95.32 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.15 Total: -48.11 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -79.64 -0.19 -79.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265867963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.106 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds