Wall clock time and date at job start Tue Mar 31 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47301 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46814 * 119.99950 * 3 2 1 7 7 C 1.37878 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99944 * 269.99758 * 10 9 7 12 12 C 1.50698 * 109.47052 * 269.99803 * 11 10 9 13 13 C 1.38673 * 120.42194 * 269.71906 * 12 11 10 14 14 C 1.38626 * 118.42263 * 179.78503 * 13 12 11 15 15 C 1.38228 * 119.16135 * 0.51470 * 14 13 12 16 16 N 1.31857 * 120.75894 * 359.72608 * 15 14 13 17 17 C 1.31881 * 121.73198 * 359.97438 * 16 15 14 18 18 C 1.34779 * 120.00078 * 89.99875 * 10 9 7 19 19 O 1.21276 * 120.00052 * 180.02562 * 18 10 9 20 20 C 1.50703 * 119.99675 * 359.97438 * 18 10 9 21 21 O 1.42905 * 109.46461 * 180.02562 * 20 18 10 22 22 C 1.42908 * 113.99577 * 180.02562 * 21 20 18 23 23 C 1.53175 * 109.54043 * 90.44155 * 22 21 20 24 24 C 1.53092 * 109.16179 * 176.84918 * 23 22 21 25 25 O 1.42910 * 109.41107 * 302.39040 * 24 23 22 26 26 C 1.42900 * 114.09727 * 61.16189 * 25 24 23 27 27 C 1.53090 * 109.41229 * 298.83586 * 26 25 24 28 28 H 0.96996 * 120.00097 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47257 * 59.99547 * 9 7 2 30 30 H 1.09004 * 109.47046 * 299.99884 * 9 7 2 31 31 H 1.08999 * 109.47244 * 29.99763 * 11 10 9 32 32 H 1.09002 * 109.47220 * 150.00143 * 11 10 9 33 33 H 1.08002 * 120.78628 * 0.02562 * 13 12 11 34 34 H 1.07998 * 120.41817 * 180.22317 * 14 13 12 35 35 H 1.07994 * 119.62204 * 179.74823 * 15 14 13 36 36 H 1.08004 * 119.62135 * 179.97438 * 17 16 15 37 37 H 1.08990 * 109.47326 * 60.00160 * 20 18 10 38 38 H 1.08999 * 109.46802 * 299.99524 * 20 18 10 39 39 H 1.08997 * 109.61229 * 330.22369 * 22 21 20 40 40 H 1.09006 * 109.52647 * 296.75219 * 23 22 21 41 41 H 1.08998 * 109.52537 * 56.94111 * 23 22 21 42 42 H 1.08998 * 109.48147 * 182.40843 * 24 23 22 43 43 H 1.08997 * 109.48550 * 62.37144 * 24 23 22 44 44 H 1.09003 * 109.47953 * 178.86010 * 26 25 24 45 45 H 1.08995 * 109.49265 * 58.82602 * 26 25 24 46 46 H 1.09001 * 109.52724 * 297.70937 * 27 26 25 47 47 H 1.09000 * 109.52338 * 177.51272 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6790 -4.1683 -1.2719 12 6 1.7623 -5.2821 -1.7078 13 6 2.0114 -6.5896 -1.3186 14 6 1.1388 -7.5810 -1.7395 15 6 0.0630 -7.2375 -2.5366 16 7 -0.1402 -5.9839 -2.8916 17 6 0.6657 -5.0143 -2.5050 18 6 2.6410 -4.1259 1.1641 19 8 3.4294 -5.0474 1.1632 20 6 2.1517 -3.5539 2.4697 21 8 2.7556 -4.2605 3.5552 22 6 2.3563 -3.7945 4.8457 23 6 1.1228 -4.5734 5.3126 24 6 0.7498 -4.1229 6.7274 25 8 1.8628 -4.3278 7.6000 26 6 3.0306 -3.5872 7.2398 27 6 3.4953 -4.0163 5.8457 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.6867 -3.3860 -2.0309 32 1 3.6884 -4.5585 -1.1420 33 1 2.8629 -6.8291 -0.6989 34 1 1.3001 -8.6095 -1.4523 35 1 -0.6192 -8.0045 -2.8722 36 1 0.4673 -3.9992 -2.8162 37 1 1.0681 -3.6556 2.5275 38 1 2.4215 -2.4995 2.5281 39 1 2.1184 -2.7320 4.7936 40 1 0.2905 -4.3772 4.6366 41 1 1.3458 -5.6403 5.3170 42 1 -0.1016 -4.7043 7.0814 43 1 0.4877 -3.0650 6.7148 44 1 3.8225 -3.7828 7.9630 45 1 2.7986 -2.5223 7.2339 46 1 3.7662 -5.0720 5.8608 47 1 4.3597 -3.4215 5.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343746998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:25 Heat of formation + Delta-G solvation = -97.248135 kcal Electronic energy + Delta-G solvation = -29192.045402 eV Core-core repulsion = 25146.800583 eV Total energy + Delta-G solvation = -4045.244819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.10894 -39.66051 -38.90254 -37.03520 -35.24691 -33.17858 -32.46371 -32.15569 -31.37371 -31.23045 -28.19112 -27.47024 -25.47390 -24.12386 -23.65662 -23.44140 -22.86513 -21.81736 -20.44593 -18.68259 -17.20902 -16.98389 -16.68326 -16.31412 -16.14925 -16.12359 -15.65937 -15.53669 -15.23395 -14.97263 -14.79793 -14.49772 -14.14843 -13.70233 -13.53470 -13.34238 -13.03307 -12.81273 -12.67042 -12.48404 -12.35728 -12.15379 -11.81559 -11.72271 -11.43204 -11.27855 -11.21475 -11.06433 -10.85459 -10.82002 -10.43223 -10.29760 -9.94167 -9.81000 -9.60794 -9.34842 -9.25239 -9.17846 -8.77077 -8.63640 -7.90532 -6.29704 -4.38723 1.28469 1.51483 3.16505 3.20006 3.22692 3.27782 3.30858 3.74110 3.99978 4.20959 4.36169 4.65650 4.68194 4.76553 4.87180 5.00968 5.03126 5.06131 5.10581 5.14313 5.20520 5.27610 5.31528 5.35405 5.44970 5.52271 5.56435 5.60623 5.66096 5.77187 5.83595 5.89570 5.93278 6.03686 6.08654 6.13602 6.17011 6.34826 6.53613 6.60335 6.92344 6.99700 7.03768 7.26620 7.44082 7.64212 7.91078 8.14030 8.17787 8.66225 8.87006 9.30276 10.76714 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007177 B = 0.004305 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.443209 B = 6501.911800 C = 9362.664896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.590 5.590 11 C 0.163 3.837 12 C -0.146 4.146 13 C -0.055 4.055 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.115 3.885 18 C 0.522 3.478 19 O -0.553 6.553 20 C 0.049 3.951 21 O -0.360 6.360 22 C 0.087 3.913 23 C -0.180 4.180 24 C 0.064 3.936 25 O -0.385 6.385 26 C 0.064 3.936 27 C -0.152 4.152 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -8.308 6.192 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.322 5.322 11 C 0.039 3.961 12 C -0.150 4.150 13 C -0.082 4.082 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.310 3.690 19 O -0.432 6.432 20 C -0.030 4.030 21 O -0.278 6.278 22 C 0.029 3.971 23 C -0.218 4.218 24 C -0.013 4.013 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.190 4.190 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.249 -8.706 5.794 10.532 hybrid contribution 0.756 1.255 0.213 1.481 sum 2.005 -7.451 6.007 9.778 Atomic orbital electron populations 1.69904 1.06016 1.27637 1.49040 1.24940 0.94843 0.99314 0.94522 0.86570 0.79576 0.82503 0.78939 1.19971 1.21081 1.20098 1.21450 0.93663 0.90326 1.52891 0.91923 1.19492 0.87445 0.82519 0.98875 1.48163 1.45851 1.34718 1.03453 1.20128 0.95915 0.93366 0.86671 1.21434 0.98695 0.95972 0.98853 1.21680 0.98634 0.92191 0.95694 1.22110 0.96934 1.00455 1.00609 1.22698 0.95765 0.93546 0.94737 1.67701 1.28967 1.00817 1.22317 1.22809 0.89608 0.98577 0.93261 1.20037 0.81141 0.82608 0.85228 1.90594 1.35310 1.29704 1.87635 1.22310 0.97709 0.97219 0.85769 1.87987 1.68284 1.59012 1.12489 1.22083 0.93809 0.97424 0.83780 1.22743 0.99155 1.02452 0.97402 1.22563 0.89072 1.00560 0.89073 1.87914 1.21506 1.68952 1.51966 1.22581 0.87984 0.95260 0.95417 1.22272 0.98517 1.03991 0.94188 0.92294 0.94255 0.94640 0.88874 0.89726 0.84436 0.85244 0.83282 0.82489 0.90840 0.88950 0.91727 0.90495 0.90135 0.88608 0.92928 0.88415 0.92944 0.90093 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 13.29 55.43 0.74 -22.55 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.24 9.28 -34.44 -0.32 -13.56 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.24 5.23 4.96 -5.19 -0.03 5.21 16 10 N -0.59 -11.72 2.44 -176.43 -0.43 -12.15 16 11 C 0.16 2.84 5.56 -5.20 -0.03 2.81 16 12 C -0.15 -2.40 5.48 -104.48 -0.57 -2.97 16 13 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 14 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 15 C 0.09 1.23 11.18 -17.54 -0.20 1.03 16 16 N -0.49 -7.96 10.36 -13.25 -0.14 -8.10 16 17 C 0.11 1.89 10.86 -17.55 -0.19 1.69 16 18 C 0.52 10.68 7.75 -10.98 -0.09 10.60 16 19 O -0.55 -12.25 15.74 -14.35 -0.23 -12.48 16 20 C 0.05 0.91 4.79 36.01 0.17 1.08 16 21 O -0.36 -6.41 9.53 -55.14 -0.53 -6.94 16 22 C 0.09 1.22 2.70 -26.55 -0.07 1.15 16 23 C -0.18 -2.25 5.76 -26.59 -0.15 -2.40 16 24 C 0.06 0.69 6.84 37.21 0.25 0.95 16 25 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 26 C 0.06 0.67 6.84 37.20 0.25 0.92 16 27 C -0.15 -1.84 5.79 -26.59 -0.15 -2.00 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.09 1.55 8.02 -51.93 -0.42 1.13 16 32 H 0.08 1.46 7.37 -51.93 -0.38 1.08 16 33 H 0.14 2.16 7.71 -52.49 -0.40 1.75 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 37 H 0.07 1.29 7.25 -51.93 -0.38 0.91 16 38 H 0.09 1.75 7.95 -51.93 -0.41 1.33 16 39 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 40 H 0.08 0.95 7.99 -51.93 -0.42 0.53 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -29.62 392.11 -9.41 -39.04 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.34 Total: 5.67 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.00 Total: 2.06 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.17 Total: -42.79 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.13 Total: -24.45 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.62 -9.41 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343746998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.211 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds