Wall clock time and date at job start Tue Mar 31 2020 17:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47301 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46814 * 119.99950 * 3 2 1 7 7 C 1.37878 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99944 * 269.99758 * 10 9 7 12 12 C 1.50698 * 109.47052 * 269.99803 * 11 10 9 13 13 C 1.38673 * 120.42194 * 269.71906 * 12 11 10 14 14 C 1.38626 * 118.42263 * 179.78503 * 13 12 11 15 15 C 1.38228 * 119.16135 * 0.51470 * 14 13 12 16 16 N 1.31857 * 120.75894 * 359.72608 * 15 14 13 17 17 C 1.31881 * 121.73198 * 359.97438 * 16 15 14 18 18 C 1.34779 * 120.00078 * 89.99875 * 10 9 7 19 19 O 1.21276 * 120.00052 * 180.02562 * 18 10 9 20 20 C 1.50703 * 119.99675 * 359.97438 * 18 10 9 21 21 O 1.42905 * 109.46461 * 180.02562 * 20 18 10 22 22 C 1.42908 * 113.99577 * 180.02562 * 21 20 18 23 23 C 1.53175 * 109.54043 * 90.44155 * 22 21 20 24 24 C 1.53092 * 109.16179 * 176.84918 * 23 22 21 25 25 O 1.42910 * 109.41107 * 302.39040 * 24 23 22 26 26 C 1.42900 * 114.09727 * 61.16189 * 25 24 23 27 27 C 1.53090 * 109.41229 * 298.83586 * 26 25 24 28 28 H 0.96996 * 120.00097 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47257 * 59.99547 * 9 7 2 30 30 H 1.09004 * 109.47046 * 299.99884 * 9 7 2 31 31 H 1.08999 * 109.47244 * 29.99763 * 11 10 9 32 32 H 1.09002 * 109.47220 * 150.00143 * 11 10 9 33 33 H 1.08002 * 120.78628 * 0.02562 * 13 12 11 34 34 H 1.07998 * 120.41817 * 180.22317 * 14 13 12 35 35 H 1.07994 * 119.62204 * 179.74823 * 15 14 13 36 36 H 1.08004 * 119.62135 * 179.97438 * 17 16 15 37 37 H 1.08990 * 109.47326 * 60.00160 * 20 18 10 38 38 H 1.08999 * 109.46802 * 299.99524 * 20 18 10 39 39 H 1.08997 * 109.61229 * 330.22369 * 22 21 20 40 40 H 1.09006 * 109.52647 * 296.75219 * 23 22 21 41 41 H 1.08998 * 109.52537 * 56.94111 * 23 22 21 42 42 H 1.08998 * 109.48147 * 182.40843 * 24 23 22 43 43 H 1.08997 * 109.48550 * 62.37144 * 24 23 22 44 44 H 1.09003 * 109.47953 * 178.86010 * 26 25 24 45 45 H 1.08995 * 109.49265 * 58.82602 * 26 25 24 46 46 H 1.09001 * 109.52724 * 297.70937 * 27 26 25 47 47 H 1.09000 * 109.52338 * 177.51272 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6790 -4.1683 -1.2719 12 6 1.7623 -5.2821 -1.7078 13 6 2.0114 -6.5896 -1.3186 14 6 1.1388 -7.5810 -1.7395 15 6 0.0630 -7.2375 -2.5366 16 7 -0.1402 -5.9839 -2.8916 17 6 0.6657 -5.0143 -2.5050 18 6 2.6410 -4.1259 1.1641 19 8 3.4294 -5.0474 1.1632 20 6 2.1517 -3.5539 2.4697 21 8 2.7556 -4.2605 3.5552 22 6 2.3563 -3.7945 4.8457 23 6 1.1228 -4.5734 5.3126 24 6 0.7498 -4.1229 6.7274 25 8 1.8628 -4.3278 7.6000 26 6 3.0306 -3.5872 7.2398 27 6 3.4953 -4.0163 5.8457 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.6867 -3.3860 -2.0309 32 1 3.6884 -4.5585 -1.1420 33 1 2.8629 -6.8291 -0.6989 34 1 1.3001 -8.6095 -1.4523 35 1 -0.6192 -8.0045 -2.8722 36 1 0.4673 -3.9992 -2.8162 37 1 1.0681 -3.6556 2.5275 38 1 2.4215 -2.4995 2.5281 39 1 2.1184 -2.7320 4.7936 40 1 0.2905 -4.3772 4.6366 41 1 1.3458 -5.6403 5.3170 42 1 -0.1016 -4.7043 7.0814 43 1 0.4877 -3.0650 6.7148 44 1 3.8225 -3.7828 7.9630 45 1 2.7986 -2.5223 7.2339 46 1 3.7662 -5.0720 5.8608 47 1 4.3597 -3.4215 5.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343746998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:24 Heat of formation + Delta-G solvation = -113.431341 kcal Electronic energy + Delta-G solvation = -29192.747158 eV Core-core repulsion = 25146.800583 eV Total energy + Delta-G solvation = -4045.946575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43964 -40.78253 -40.23153 -38.27760 -36.89770 -34.86452 -33.74674 -33.42867 -32.61837 -32.13224 -29.61200 -29.25108 -26.85260 -25.20867 -24.96512 -24.57100 -24.33648 -23.08047 -21.47223 -20.23866 -18.73414 -18.51617 -17.94200 -17.75427 -17.35514 -17.17892 -16.97313 -16.87450 -16.59392 -16.26319 -16.14951 -15.74286 -15.41905 -14.97404 -14.67832 -14.54979 -14.31210 -14.23595 -14.05523 -13.86643 -13.67248 -13.47514 -13.31429 -13.22727 -12.80252 -12.69345 -12.49977 -12.41940 -12.28131 -12.10532 -11.91294 -11.77453 -11.40874 -10.95373 -10.75439 -10.67857 -10.63085 -10.50931 -10.47426 -9.98035 -9.56624 -8.21920 -6.36945 0.10163 0.31496 1.43089 1.44831 1.51378 1.61859 1.89941 2.39472 2.74687 2.92001 3.01946 3.09107 3.52789 3.60798 3.70771 3.80998 3.86370 3.93789 3.95436 4.04901 4.07947 4.09264 4.14832 4.24847 4.31244 4.41364 4.46002 4.52071 4.64938 4.65861 4.72263 4.73706 4.80490 4.81848 4.86059 5.01061 5.09117 5.13482 5.16494 5.19030 5.35486 5.59103 5.74276 5.76258 6.01473 6.07678 6.19037 6.45583 6.76184 6.99721 7.21059 7.36727 8.83474 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007177 B = 0.004305 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.443209 B = 6501.911800 C = 9362.664896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.252 3.748 10 N -0.589 5.589 11 C 0.163 3.837 12 C -0.157 4.157 13 C -0.066 4.066 14 C -0.170 4.170 15 C 0.091 3.909 16 N -0.510 5.510 17 C 0.102 3.898 18 C 0.516 3.484 19 O -0.573 6.573 20 C 0.059 3.941 21 O -0.379 6.379 22 C 0.076 3.924 23 C -0.176 4.176 24 C 0.066 3.934 25 O -0.398 6.398 26 C 0.066 3.934 27 C -0.149 4.149 28 H 0.268 0.732 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.165 0.835 35 H 0.187 0.813 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -8.815 6.928 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.132 3.868 10 N -0.320 5.320 11 C 0.040 3.960 12 C -0.160 4.160 13 C -0.092 4.092 14 C -0.189 4.189 15 C -0.066 4.066 16 N -0.219 5.219 17 C -0.054 4.054 18 C 0.304 3.696 19 O -0.453 6.453 20 C -0.021 4.021 21 O -0.298 6.298 22 C 0.018 3.982 23 C -0.214 4.214 24 C -0.011 4.011 25 O -0.317 6.317 26 C -0.011 4.011 27 C -0.186 4.186 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.183 0.817 35 H 0.204 0.796 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.170 -9.213 6.527 11.352 hybrid contribution 0.782 1.311 -0.032 1.527 sum 1.952 -7.902 6.495 10.414 Atomic orbital electron populations 1.69993 1.07178 1.28340 1.50005 1.25585 0.95465 1.02089 0.94235 0.85684 0.78449 0.79074 0.78958 1.19757 1.20856 1.19626 1.21621 0.93420 0.91319 1.52433 0.92573 1.19151 0.87344 0.82601 0.97739 1.48140 1.45289 1.34140 1.04397 1.20191 0.96175 0.93935 0.85698 1.21266 0.98814 0.96098 0.99801 1.21763 0.99156 0.92360 0.95955 1.22462 0.95679 1.01591 0.99198 1.23342 0.96182 0.93297 0.93793 1.67722 1.29223 1.01869 1.23037 1.22751 0.89992 0.98784 0.93884 1.20401 0.80856 0.82394 0.85906 1.90571 1.36217 1.30585 1.87962 1.22142 0.97940 0.96567 0.85412 1.87969 1.68747 1.59406 1.13646 1.22407 0.95345 0.97888 0.82518 1.22706 0.98383 1.01558 0.98733 1.22650 0.89278 1.01516 0.87643 1.87902 1.22120 1.69478 1.52223 1.22711 0.88096 0.95739 0.94522 1.22285 0.98019 1.03456 0.94884 0.92240 0.95455 0.95533 0.88669 0.89796 0.84997 0.81745 0.79633 0.83049 0.90208 0.89663 0.91285 0.90594 0.91212 0.86897 0.91843 0.86314 0.91707 0.91161 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.24 13.29 21.45 0.28 -47.96 16 2 C 0.03 1.37 5.46 84.66 0.46 1.83 16 3 Si 0.95 39.89 29.54 68.60 2.03 41.91 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.55 -26.95 9.28 25.60 0.24 -26.71 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.25 11.41 4.96 85.63 0.43 11.84 16 10 N -0.59 -23.87 2.44 -830.50 -2.03 -25.90 16 11 C 0.16 5.81 5.56 85.63 0.48 6.29 16 12 C -0.16 -5.18 5.48 -19.77 -0.11 -5.29 16 13 C -0.07 -1.98 9.86 22.47 0.22 -1.76 16 14 C -0.17 -4.12 10.11 22.36 0.23 -3.89 16 15 C 0.09 2.28 11.18 84.69 0.95 3.23 16 16 N -0.51 -16.12 10.36 -195.84 -2.03 -18.15 16 17 C 0.10 3.40 10.86 84.67 0.92 4.32 16 18 C 0.52 21.47 7.75 87.66 0.68 22.15 16 19 O -0.57 -25.72 15.74 16.02 0.25 -25.47 16 20 C 0.06 2.20 4.79 71.24 0.34 2.54 16 21 O -0.38 -13.65 9.53 -129.94 -1.24 -14.89 16 22 C 0.08 2.10 2.70 30.71 0.08 2.18 16 23 C -0.18 -4.30 5.76 30.68 0.18 -4.12 16 24 C 0.07 1.31 6.84 72.01 0.49 1.80 16 25 O -0.40 -8.92 10.77 -148.98 -1.60 -10.52 16 26 C 0.07 1.24 6.84 72.01 0.49 1.73 16 27 C -0.15 -3.49 5.79 30.68 0.18 -3.31 16 28 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 30 H 0.03 1.25 6.44 -2.38 -0.02 1.24 16 31 H 0.10 3.28 8.02 -2.39 -0.02 3.26 16 32 H 0.08 2.97 7.37 -2.39 -0.02 2.96 16 33 H 0.13 4.11 7.71 -2.91 -0.02 4.09 16 34 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 37 H 0.08 2.85 7.25 -2.39 -0.02 2.83 16 38 H 0.09 3.29 7.95 -2.39 -0.02 3.27 16 39 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 40 H 0.08 1.84 7.99 -2.38 -0.02 1.82 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -62.74 392.11 2.87 -59.87 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.95 Total: 28.26 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.25 Total: 12.83 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.77 Total: -92.00 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -2.59 Total: -50.87 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.91 kcal Total: -62.74 2.87 -59.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343746998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.559 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds