Wall clock time and date at job start Tue Mar 31 2020 17:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48499 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47145 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.47188 * 60.00465 * 3 2 1 7 7 C 1.38816 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99253 * 158.98690 * 7 2 1 9 9 N 1.36929 * 120.00478 * 338.98976 * 7 2 1 10 10 C 1.46932 * 120.62900 * 334.34009 * 9 7 2 11 11 C 1.53161 * 108.77173 * 233.58821 * 10 9 7 12 12 C 1.53045 * 109.32556 * 305.35934 * 11 10 9 13 13 C 1.53035 * 109.52820 * 61.36973 * 12 11 10 14 14 H 1.09001 * 109.49977 * 58.59332 * 13 12 11 15 15 C 1.52997 * 109.49704 * 178.68728 * 13 12 11 16 16 N 1.46505 * 109.47467 * 185.00005 * 15 13 12 17 17 C 1.34766 * 120.00394 * 180.02562 * 16 15 13 18 18 O 1.21290 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00372 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47436 * 175.01893 * 19 17 16 21 21 C 1.53005 * 115.54639 * 287.93852 * 20 19 17 22 22 F 1.39899 * 109.47023 * 67.67221 * 21 20 19 23 23 F 1.39909 * 109.46702 * 187.66460 * 21 20 19 24 24 F 1.39892 * 109.47078 * 307.66613 * 21 20 19 25 25 C 1.52996 * 117.50207 * 142.26932 * 20 19 17 26 26 C 1.53002 * 117.50207 * 73.60765 * 20 19 17 27 27 C 1.46926 * 120.63394 * 154.32434 * 9 7 2 28 28 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58465 * 353.37826 * 10 9 7 30 30 H 1.09007 * 109.58305 * 113.65800 * 10 9 7 31 31 H 1.09000 * 109.48258 * 185.40825 * 11 10 9 32 32 H 1.09003 * 109.49847 * 65.31638 * 11 10 9 33 33 H 1.08994 * 109.46058 * 301.35242 * 12 11 10 34 34 H 1.08998 * 109.45664 * 181.38394 * 12 11 10 35 35 H 1.09003 * 109.47537 * 304.99908 * 15 13 12 36 36 H 1.09003 * 109.46916 * 64.99963 * 15 13 12 37 37 H 0.97001 * 119.99391 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.47352 * 295.01964 * 19 17 16 39 39 H 1.09004 * 109.47118 * 55.01919 * 19 17 16 40 40 H 1.09008 * 117.49682 * 0.02562 * 25 20 19 41 41 H 1.08999 * 117.50168 * 145.01500 * 25 20 19 42 42 H 1.08998 * 117.49710 * 214.98179 * 26 20 19 43 43 H 1.09007 * 117.49408 * 0.02562 * 26 20 19 44 44 H 1.08998 * 109.58892 * 6.61981 * 27 9 7 45 45 H 1.09004 * 109.69988 * 246.26916 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0364 -1.2334 -0.3349 9 7 1.3938 -2.3485 0.4262 10 6 0.2727 -2.2879 1.3740 11 6 0.5850 -3.1981 2.5656 12 6 0.9029 -4.6064 2.0576 13 6 2.1352 -4.5572 1.1515 14 1 2.9800 -4.1510 1.7078 15 6 2.4719 -5.9700 0.6703 16 7 3.7187 -5.9400 -0.0984 17 6 4.2131 -7.0777 -0.6253 18 8 3.6256 -8.1264 -0.4634 19 6 5.4953 -7.0467 -1.4165 20 6 5.8973 -8.4743 -1.7924 21 6 6.4160 -9.3385 -0.6412 22 9 5.3724 -9.5988 0.2534 23 9 6.9069 -10.5461 -1.1492 24 9 7.4428 -8.6608 0.0246 25 6 6.5158 -8.6934 -3.1745 26 6 5.0894 -9.1702 -2.8896 27 6 1.8407 -3.6623 -0.0564 28 1 -0.4850 0.8401 0.0004 29 1 0.1428 -1.2629 1.7212 30 1 -0.6398 -2.6257 0.8826 31 1 -0.2787 -3.2372 3.2294 32 1 1.4444 -2.8047 3.1086 33 1 0.0526 -4.9895 1.4936 34 1 1.1015 -5.2620 2.9054 35 1 2.5915 -6.6282 1.5309 36 1 1.6645 -6.3408 0.0388 37 1 4.1883 -5.1013 -0.2282 38 1 5.3486 -6.4599 -2.3233 39 1 6.2830 -6.5940 -0.8143 40 1 6.6367 -7.8204 -3.8159 41 1 7.2920 -9.4534 -3.2638 42 1 4.9277 -10.2436 -2.7916 43 1 4.2716 -8.6106 -3.3441 44 1 2.7453 -3.5442 -0.6529 45 1 1.0583 -4.1158 -0.6650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354087099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:29 Heat of formation + Delta-G solvation = -154.429486 kcal Electronic energy + Delta-G solvation = -29783.980778 eV Core-core repulsion = 25194.399649 eV Total energy + Delta-G solvation = -4589.581128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.17381 -47.77594 -47.53254 -39.98870 -38.19430 -37.41878 -34.79159 -33.04497 -30.95164 -30.48521 -29.52750 -26.85580 -25.39955 -25.08474 -22.98528 -22.19044 -21.41931 -20.85105 -20.22180 -19.09946 -18.52313 -18.35510 -17.76752 -16.98414 -16.59423 -15.80035 -15.46474 -15.08556 -14.86224 -14.54983 -14.48441 -14.29166 -14.12533 -13.91380 -13.83577 -13.76797 -13.65295 -13.48719 -13.43094 -12.84403 -12.72415 -12.38179 -12.20894 -12.06747 -11.99549 -11.73871 -11.31344 -11.08717 -11.04559 -10.78437 -10.74456 -10.50813 -10.25661 -10.21506 -9.98645 -9.83199 -9.55819 -9.45042 -8.92539 -8.49189 -6.75670 -5.84305 -3.23103 2.54038 2.66788 2.82594 3.32202 3.33512 3.42045 3.43557 3.60586 3.71540 4.10377 4.15825 4.44625 4.52884 4.54023 4.88519 5.05092 5.09776 5.14334 5.19621 5.26293 5.31964 5.41321 5.43821 5.49355 5.58452 5.64771 5.80543 5.93798 5.97468 6.20449 6.29853 6.34505 6.49001 6.55284 6.66621 6.73744 6.82294 6.92078 7.35278 7.55561 7.61750 7.74680 8.25661 8.37913 9.15265 9.80250 10.36194 11.24187 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.002559 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.072962 B =10940.899605 C =11685.762241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.129 3.871 16 N -0.723 5.723 17 C 0.504 3.496 18 O -0.527 6.527 19 C -0.105 4.105 20 C -0.184 4.184 21 C 0.487 3.513 22 F -0.160 7.160 23 F -0.186 7.186 24 F -0.184 7.184 25 C -0.148 4.148 26 C -0.126 4.126 27 C 0.155 3.845 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.403 0.597 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.040 -16.871 -3.231 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.375 5.375 17 C 0.289 3.711 18 O -0.403 6.403 19 C -0.145 4.145 20 C -0.186 4.186 21 C 0.433 3.567 22 F -0.141 7.141 23 F -0.167 7.167 24 F -0.166 7.166 25 C -0.185 4.185 26 C -0.163 4.163 27 C 0.028 3.972 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.237 0.763 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.068 0.932 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.501 -17.492 -3.091 21.162 hybrid contribution 0.698 1.243 0.267 1.450 sum 12.199 -16.249 -2.823 20.514 Atomic orbital electron populations 1.70094 1.05317 1.25471 1.53383 1.24967 0.95177 0.98442 1.01084 0.86286 0.79442 0.84107 0.77306 1.20265 1.21790 1.21538 1.19191 0.94094 0.85532 1.39586 0.91609 1.44075 1.38058 1.00497 1.48767 1.20800 0.88759 0.99044 0.87213 1.22152 1.00199 0.95721 0.99948 1.21338 0.96900 0.97725 0.97822 1.21953 0.98938 0.93444 0.99514 0.90870 1.21446 0.85207 0.97832 0.95012 1.46045 1.26505 1.10238 1.54733 1.20395 0.86526 0.84141 0.80060 1.90749 1.60444 1.30069 1.59037 1.21185 0.96988 0.93679 1.02656 1.22001 1.10206 0.96898 0.89516 1.19382 0.75441 0.78408 0.83462 1.93303 1.57038 1.94132 1.69619 1.93144 1.88480 1.47940 1.87165 1.93163 1.60911 1.79965 1.82525 1.23313 0.97651 1.04378 0.93190 1.23049 0.94789 1.01568 0.96908 1.20875 0.97313 0.86839 0.92160 0.93667 0.89597 0.96441 0.93154 0.92718 0.92487 0.93419 0.92007 0.91610 0.76252 0.86757 0.87656 0.86779 0.87277 0.87515 0.86937 0.93206 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.28 55.49 0.63 -24.97 16 2 C 0.00 0.06 4.83 -17.43 -0.08 -0.03 16 3 Si 0.90 21.07 29.60 -169.99 -5.03 16.04 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 8 H 0.07 1.69 7.90 -52.48 -0.41 1.27 16 9 N -0.59 -14.18 3.00 -172.33 -0.52 -14.70 16 10 C 0.17 3.89 5.35 -3.72 -0.02 3.87 16 11 C -0.14 -2.60 6.08 -26.62 -0.16 -2.77 16 12 C -0.10 -1.61 5.17 -26.69 -0.14 -1.74 16 13 C -0.12 -1.87 2.37 -90.51 -0.21 -2.08 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.13 1.81 5.07 -4.04 -0.02 1.79 16 16 N -0.72 -8.91 5.33 -60.29 -0.32 -9.23 16 17 C 0.50 6.28 7.52 -10.99 -0.08 6.20 16 18 O -0.53 -8.29 13.42 5.55 0.07 -8.21 16 19 C -0.11 -0.92 5.51 -27.88 -0.15 -1.08 16 20 C -0.18 -1.70 1.33 -154.51 -0.21 -1.91 16 21 C 0.49 5.53 3.06 37.16 0.11 5.64 16 22 F -0.16 -2.27 14.69 2.25 0.03 -2.24 16 23 F -0.19 -2.02 15.92 2.25 0.04 -1.98 16 24 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 25 C -0.15 -0.95 9.61 -26.70 -0.26 -1.21 16 26 C -0.13 -1.04 9.24 -26.69 -0.25 -1.28 16 27 C 0.15 3.00 5.60 -3.71 -0.02 2.98 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.09 2.25 6.00 -51.93 -0.31 1.93 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 4.35 7.71 -40.82 -0.31 4.04 16 38 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 39 H 0.11 0.80 7.74 -51.93 -0.40 0.40 16 40 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.11 0.65 7.56 -51.93 -0.39 0.26 16 42 H 0.11 0.89 8.01 -51.93 -0.42 0.48 16 43 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -31.20 369.64 -7.95 -39.15 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.82 Total: 1.12 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.63 Total: 1.52 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.21 Total: -48.90 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.20 -7.95 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354087099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.277 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds