Wall clock time and date at job start Tue Mar 31 2020 17:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48499 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47145 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.47188 * 60.00465 * 3 2 1 7 7 C 1.38816 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99253 * 158.98690 * 7 2 1 9 9 N 1.36929 * 120.00478 * 338.98976 * 7 2 1 10 10 C 1.46932 * 120.62900 * 334.34009 * 9 7 2 11 11 C 1.53161 * 108.77173 * 233.58821 * 10 9 7 12 12 C 1.53045 * 109.32556 * 305.35934 * 11 10 9 13 13 C 1.53035 * 109.52820 * 61.36973 * 12 11 10 14 14 H 1.09001 * 109.49977 * 58.59332 * 13 12 11 15 15 C 1.52997 * 109.49704 * 178.68728 * 13 12 11 16 16 N 1.46505 * 109.47467 * 185.00005 * 15 13 12 17 17 C 1.34766 * 120.00394 * 180.02562 * 16 15 13 18 18 O 1.21290 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00372 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47436 * 175.01893 * 19 17 16 21 21 C 1.53005 * 115.54639 * 287.93852 * 20 19 17 22 22 F 1.39899 * 109.47023 * 67.67221 * 21 20 19 23 23 F 1.39909 * 109.46702 * 187.66460 * 21 20 19 24 24 F 1.39892 * 109.47078 * 307.66613 * 21 20 19 25 25 C 1.52996 * 117.50207 * 142.26932 * 20 19 17 26 26 C 1.53002 * 117.50207 * 73.60765 * 20 19 17 27 27 C 1.46926 * 120.63394 * 154.32434 * 9 7 2 28 28 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58465 * 353.37826 * 10 9 7 30 30 H 1.09007 * 109.58305 * 113.65800 * 10 9 7 31 31 H 1.09000 * 109.48258 * 185.40825 * 11 10 9 32 32 H 1.09003 * 109.49847 * 65.31638 * 11 10 9 33 33 H 1.08994 * 109.46058 * 301.35242 * 12 11 10 34 34 H 1.08998 * 109.45664 * 181.38394 * 12 11 10 35 35 H 1.09003 * 109.47537 * 304.99908 * 15 13 12 36 36 H 1.09003 * 109.46916 * 64.99963 * 15 13 12 37 37 H 0.97001 * 119.99391 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.47352 * 295.01964 * 19 17 16 39 39 H 1.09004 * 109.47118 * 55.01919 * 19 17 16 40 40 H 1.09008 * 117.49682 * 0.02562 * 25 20 19 41 41 H 1.08999 * 117.50168 * 145.01500 * 25 20 19 42 42 H 1.08998 * 117.49710 * 214.98179 * 26 20 19 43 43 H 1.09007 * 117.49408 * 0.02562 * 26 20 19 44 44 H 1.08998 * 109.58892 * 6.61981 * 27 9 7 45 45 H 1.09004 * 109.69988 * 246.26916 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0364 -1.2334 -0.3349 9 7 1.3938 -2.3485 0.4262 10 6 0.2727 -2.2879 1.3740 11 6 0.5850 -3.1981 2.5656 12 6 0.9029 -4.6064 2.0576 13 6 2.1352 -4.5572 1.1515 14 1 2.9800 -4.1510 1.7078 15 6 2.4719 -5.9700 0.6703 16 7 3.7187 -5.9400 -0.0984 17 6 4.2131 -7.0777 -0.6253 18 8 3.6256 -8.1264 -0.4634 19 6 5.4953 -7.0467 -1.4165 20 6 5.8973 -8.4743 -1.7924 21 6 6.4160 -9.3385 -0.6412 22 9 5.3724 -9.5988 0.2534 23 9 6.9069 -10.5461 -1.1492 24 9 7.4428 -8.6608 0.0246 25 6 6.5158 -8.6934 -3.1745 26 6 5.0894 -9.1702 -2.8896 27 6 1.8407 -3.6623 -0.0564 28 1 -0.4850 0.8401 0.0004 29 1 0.1428 -1.2629 1.7212 30 1 -0.6398 -2.6257 0.8826 31 1 -0.2787 -3.2372 3.2294 32 1 1.4444 -2.8047 3.1086 33 1 0.0526 -4.9895 1.4936 34 1 1.1015 -5.2620 2.9054 35 1 2.5915 -6.6282 1.5309 36 1 1.6645 -6.3408 0.0388 37 1 4.1883 -5.1013 -0.2282 38 1 5.3486 -6.4599 -2.3233 39 1 6.2830 -6.5940 -0.8143 40 1 6.6367 -7.8204 -3.8159 41 1 7.2920 -9.4534 -3.2638 42 1 4.9277 -10.2436 -2.7916 43 1 4.2716 -8.6106 -3.3441 44 1 2.7453 -3.5442 -0.6529 45 1 1.0583 -4.1158 -0.6650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354087099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:28 Heat of formation + Delta-G solvation = -172.547348 kcal Electronic energy + Delta-G solvation = -29784.766427 eV Core-core repulsion = 25194.399649 eV Total energy + Delta-G solvation = -4590.366778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.04998 -48.62861 -48.47537 -40.94305 -39.48184 -38.35265 -36.15712 -34.63607 -32.32440 -32.19545 -30.49768 -27.71946 -27.22864 -26.38423 -23.83080 -23.53855 -22.72591 -21.94342 -21.20101 -20.54514 -19.38939 -19.24634 -18.74513 -18.44618 -17.75875 -16.88698 -16.70013 -16.48912 -15.84332 -15.80865 -15.51920 -15.43318 -15.15523 -15.04492 -15.00017 -14.73219 -14.70751 -14.57124 -14.49827 -14.42450 -14.01246 -13.74240 -13.72840 -13.06692 -12.97384 -12.90529 -12.54962 -12.48356 -12.45538 -12.20753 -11.93928 -11.81156 -11.71740 -11.57518 -11.39389 -11.31975 -11.08810 -10.69116 -10.50855 -9.98341 -8.70616 -7.86536 -5.27823 1.47474 1.50570 1.60177 1.70543 1.78156 2.09033 2.51531 2.52955 2.83293 2.96179 3.27835 3.43806 3.47348 3.61307 3.74898 3.83332 4.00487 4.03370 4.06461 4.18398 4.40727 4.49541 4.54318 4.59518 4.62839 4.70261 4.72928 4.79278 4.89625 4.93626 4.94932 5.01519 5.10995 5.12536 5.24566 5.33905 5.40866 5.52867 5.59032 5.68365 5.77929 6.38605 6.61667 7.15255 7.31990 7.88014 8.39533 9.20355 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.002559 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.072962 B =10940.899605 C =11685.762241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.054 4.054 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.259 4.259 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.076 0.924 15 C 0.141 3.859 16 N -0.721 5.721 17 C 0.500 3.500 18 O -0.563 6.563 19 C -0.099 4.099 20 C -0.202 4.202 21 C 0.480 3.520 22 F -0.182 7.182 23 F -0.186 7.186 24 F -0.186 7.186 25 C -0.119 4.119 26 C -0.137 4.137 27 C 0.154 3.846 28 H 0.248 0.752 29 H 0.051 0.949 30 H -0.008 1.008 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.250 -17.318 -3.671 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.168 4.168 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.016 3.984 16 N -0.374 5.374 17 C 0.287 3.713 18 O -0.441 6.441 19 C -0.138 4.138 20 C -0.203 4.203 21 C 0.426 3.574 22 F -0.163 7.163 23 F -0.168 7.168 24 F -0.168 7.168 25 C -0.156 4.156 26 C -0.174 4.174 27 C 0.028 3.972 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.248 0.752 38 H 0.162 0.838 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 13.751 -17.956 -3.534 22.891 hybrid contribution 0.000 1.302 0.385 1.358 sum 13.750 -16.654 -3.149 21.825 Atomic orbital electron populations 1.70242 1.06842 1.25715 1.55387 1.25726 0.95859 1.01539 1.01759 0.85274 0.78968 0.80086 0.76526 1.18625 1.22259 1.22093 1.19591 0.94498 0.86536 1.38281 0.90828 1.44353 1.37991 1.01616 1.49287 1.20634 0.88002 0.98118 0.88706 1.21982 1.00890 0.96014 0.97953 1.21339 0.96900 0.96497 0.98868 1.21709 0.98924 0.93662 0.97752 0.90591 1.21176 0.85870 0.96205 0.95134 1.46011 1.25943 1.10901 1.54499 1.21070 0.87341 0.83316 0.79622 1.90739 1.61744 1.31299 1.60324 1.21249 0.95042 0.94005 1.03502 1.22083 1.11923 0.96726 0.89613 1.19788 0.75002 0.78798 0.83810 1.93256 1.58093 1.94348 1.70616 1.93136 1.88438 1.48150 1.87048 1.93151 1.60938 1.79929 1.82753 1.23471 0.96259 1.05046 0.90784 1.23088 0.96207 1.01164 0.96892 1.21009 0.97129 0.85330 0.93691 0.94268 0.93085 0.98963 0.91396 0.92808 0.92724 0.90466 0.91722 0.92616 0.75208 0.83796 0.86179 0.84132 0.86701 0.88363 0.86735 0.92086 0.97669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.81 11.28 21.65 0.24 -54.57 16 2 C -0.05 -2.92 4.83 84.86 0.41 -2.51 16 3 Si 0.96 43.57 29.60 68.60 2.03 45.60 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.26 -13.61 9.58 84.04 0.81 -12.81 16 8 H 0.07 3.68 7.90 -2.91 -0.02 3.65 16 9 N -0.61 -29.24 3.00 -699.14 -2.10 -31.34 16 10 C 0.17 8.10 5.35 86.35 0.46 8.57 16 11 C -0.13 -4.65 6.08 30.66 0.19 -4.46 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.10 -2.99 2.37 -10.72 -0.03 -3.02 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.14 3.69 5.07 86.38 0.44 4.13 16 16 N -0.72 -16.23 5.33 -463.05 -2.47 -18.70 16 17 C 0.50 11.54 7.52 87.66 0.66 12.20 16 18 O -0.56 -17.22 13.42 -3.06 -0.04 -17.26 16 19 C -0.10 -1.45 5.51 29.85 0.16 -1.28 16 20 C -0.20 -3.28 1.33 -52.18 -0.07 -3.35 16 21 C 0.48 10.36 3.06 71.98 0.22 10.58 16 22 F -0.18 -5.14 14.69 44.97 0.66 -4.48 16 23 F -0.19 -3.88 15.92 44.97 0.72 -3.16 16 24 F -0.19 -3.99 16.80 44.97 0.76 -3.23 16 25 C -0.12 -1.15 9.61 30.62 0.29 -0.85 16 26 C -0.14 -2.00 9.24 30.62 0.28 -1.72 16 27 C 0.15 5.82 5.60 86.36 0.48 6.30 16 28 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.05 2.76 6.00 -2.39 -0.01 2.74 16 30 H -0.01 -0.40 8.14 -2.38 -0.02 -0.41 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 7.80 7.71 -92.71 -0.71 7.09 16 38 H 0.14 1.27 8.04 -2.39 -0.02 1.25 16 39 H 0.12 1.44 7.74 -2.39 -0.02 1.42 16 40 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.11 1.01 7.56 -2.39 -0.02 1.00 16 42 H 0.10 1.58 8.01 -2.39 -0.02 1.56 16 43 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 45 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -69.18 369.64 4.56 -64.62 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.29 Total: 13.55 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.47 Total: 8.97 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.32 Total: -104.61 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.04 Total: -17.26 kcal Atomic # 9 Polarization: -13.01 SS G_CDS: 2.13 Total: -10.88 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.18 4.56 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354087099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.924 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds