Wall clock time and date at job start Tue Mar 31 2020 17:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47136 * 269.99916 * 3 2 1 5 5 H 1.48505 * 109.47264 * 29.99779 * 3 2 1 6 6 H 1.48495 * 109.47375 * 149.99892 * 3 2 1 7 7 C 1.37872 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47032 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46935 * 304.99378 * 11 10 9 13 13 N 1.46891 * 109.47499 * 64.99770 * 11 10 9 14 14 C 1.50703 * 109.47030 * 185.00267 * 11 10 9 15 15 O 1.21296 * 119.99662 * 260.00071 * 14 11 10 16 16 N 1.34775 * 120.00457 * 79.99286 * 14 11 10 17 17 C 1.40108 * 120.00236 * 175.24900 * 16 14 11 18 18 C 1.38846 * 120.01047 * 36.12675 * 17 16 14 19 19 C 1.38087 * 119.98059 * 179.97438 * 18 17 16 20 20 C 1.38718 * 120.02023 * 359.96878 * 19 18 17 21 21 O 1.35974 * 119.99181 * 180.02562 * 20 19 18 22 22 C 1.42901 * 116.99251 * 5.04392 * 21 20 19 23 23 H 1.08993 * 110.91587 * 37.62026 * 22 21 20 24 24 C 1.55309 * 110.84552 * 161.20455 * 22 21 20 25 25 C 1.54940 * 100.94326 * 152.31834 * 24 22 21 26 26 O 1.43647 * 105.13788 * 323.55761 * 25 24 22 27 27 C 1.43236 * 109.97129 * 24.42722 * 26 25 24 28 28 C 1.38728 * 120.02405 * 0.28461 * 20 19 18 29 29 C 1.38082 * 120.01669 * 359.48681 * 28 20 19 30 30 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47143 * 60.00122 * 9 7 2 32 32 H 1.08998 * 109.46777 * 300.00550 * 9 7 2 33 33 H 1.08993 * 109.46996 * 59.99980 * 10 9 7 34 34 H 1.09001 * 109.46771 * 299.99925 * 10 9 7 35 35 H 1.00902 * 111.00563 * 296.04941 * 13 11 10 36 36 H 1.00906 * 111.00245 * 59.99962 * 13 11 10 37 37 H 0.97001 * 119.99811 * 355.25637 * 16 14 11 38 38 H 1.07996 * 120.01311 * 359.97438 * 18 17 16 39 39 H 1.08007 * 119.99519 * 179.97438 * 19 18 17 40 40 H 1.09002 * 111.12264 * 34.40132 * 24 22 21 41 41 H 1.09000 * 111.12454 * 270.24380 * 24 22 21 42 42 H 1.09005 * 110.31011 * 204.63616 * 25 24 22 43 43 H 1.09007 * 110.39218 * 82.51680 * 25 24 22 44 44 H 1.09000 * 109.83258 * 117.80456 * 27 26 25 45 45 H 1.09000 * 109.82583 * 238.77999 * 27 26 25 46 46 H 1.08010 * 119.99065 * 179.71866 * 28 20 19 47 47 H 1.08001 * 120.00909 * 180.25969 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0022 12 1 5.9156 -2.0466 -0.8392 13 7 6.0403 -2.0515 1.2579 14 6 6.0542 -4.0517 -0.1218 15 8 6.4275 -4.6512 0.8643 16 7 6.0886 -4.6514 -1.3283 17 6 6.6476 -5.9294 -1.4597 18 6 6.4854 -6.8657 -0.4474 19 6 7.0362 -8.1253 -0.5778 20 6 7.7506 -8.4555 -1.7201 21 8 8.2922 -9.6961 -1.8481 22 6 7.9936 -10.6434 -0.8207 23 1 6.9650 -10.5338 -0.4775 24 6 8.2616 -12.0927 -1.3104 25 6 8.5880 -12.8000 0.0289 26 8 9.3140 -11.8287 0.7989 27 6 8.9830 -10.5072 0.3566 28 6 7.9174 -7.5186 -2.7296 29 6 7.3633 -6.2603 -2.6026 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6799 0.8912 32 1 3.8752 -0.6802 -0.8888 33 1 3.6587 -3.1500 -0.8892 34 1 3.6580 -3.1504 0.8907 35 1 5.7708 -1.0821 1.3344 36 1 5.7162 -2.5807 2.0536 37 1 5.7265 -4.1981 -2.1057 38 1 5.9288 -6.6091 0.4418 39 1 6.9106 -8.8537 0.2097 40 1 9.1129 -12.1265 -1.9902 41 1 7.3733 -12.5210 -1.7746 42 1 9.2058 -13.6804 -0.1489 43 1 7.6693 -13.0811 0.5438 44 1 8.5161 -9.9511 1.1695 45 1 9.8843 -9.9920 0.0244 46 1 8.4777 -7.7748 -3.6167 47 1 7.4896 -5.5324 -3.3904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424130580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:11 Heat of formation + Delta-G solvation = -92.908644 kcal Electronic energy + Delta-G solvation = -27807.552667 eV Core-core repulsion = 23762.496023 eV Total energy + Delta-G solvation = -4045.056644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00599 -40.29016 -39.03968 -37.45471 -35.71634 -34.44230 -32.86764 -32.09862 -31.25543 -30.39482 -29.55810 -28.95360 -26.78318 -24.23409 -23.66045 -23.19901 -22.37587 -21.35035 -20.62947 -19.92401 -18.75838 -17.91370 -17.44735 -17.19669 -16.77853 -16.62064 -15.77165 -15.34704 -14.97044 -14.88387 -14.76330 -14.56006 -14.44511 -14.27628 -13.87163 -13.73864 -13.48853 -13.28786 -13.16926 -12.84592 -12.75999 -12.73699 -12.50414 -12.07560 -11.92239 -11.61425 -11.48350 -11.29552 -11.07287 -11.00325 -10.43582 -10.17117 -10.06356 -9.96273 -9.93706 -9.53927 -9.36963 -9.18615 -8.66762 -8.43125 -7.89614 -6.16074 -4.16167 1.07900 1.19353 2.63326 2.67436 3.01260 3.21347 3.30179 3.30746 3.40073 3.58621 3.80479 4.27840 4.31763 4.33352 4.50350 4.61207 4.64478 4.69762 4.80607 4.93332 4.97925 5.08795 5.14730 5.16533 5.16613 5.26242 5.33647 5.35627 5.37974 5.43976 5.48281 5.71908 5.81497 6.03783 6.16445 6.16923 6.24768 6.27291 6.41109 6.56945 6.67990 7.01898 7.11780 7.14118 7.20541 7.43129 7.60587 7.69388 8.18325 8.39337 8.87469 9.44824 10.97006 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.001871 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.804203 B =14965.528595 C =15015.638581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.074 3.926 12 H 0.100 0.900 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.518 6.518 16 N -0.676 5.676 17 C 0.120 3.880 18 C -0.079 4.079 19 C -0.189 4.189 20 C 0.104 3.896 21 O -0.300 6.300 22 C 0.052 3.948 23 H 0.092 0.908 24 C -0.150 4.150 25 C 0.051 3.949 26 O -0.377 6.377 27 C 0.028 3.972 28 C -0.130 4.130 29 C -0.106 4.106 30 H 0.264 0.736 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.353 0.647 36 H 0.349 0.651 37 H 0.413 0.587 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.134 0.866 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.489 -21.181 -5.564 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.171 4.171 11 C -0.041 4.041 12 H 0.118 0.882 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.392 6.392 16 N -0.322 5.322 17 C 0.026 3.974 18 C -0.099 4.099 19 C -0.208 4.208 20 C 0.059 3.941 21 O -0.214 6.214 22 C -0.005 4.005 23 H 0.110 0.890 24 C -0.187 4.187 25 C -0.025 4.025 26 O -0.296 6.296 27 C -0.049 4.049 28 C -0.149 4.149 29 C -0.127 4.127 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.249 0.751 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.152 0.848 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.589 -21.694 -5.067 29.015 hybrid contribution -1.248 1.408 -0.228 1.896 sum 17.341 -20.285 -5.295 27.207 Atomic orbital electron populations 1.69909 1.06340 1.27067 1.50471 1.25048 0.94771 0.99255 0.94378 0.86757 0.80298 0.83522 0.78536 1.20249 1.21304 1.18985 1.21048 0.89167 0.94555 1.51562 0.91060 1.19576 0.97630 0.91185 0.96402 1.22235 0.90974 1.01369 1.02499 1.21510 0.95779 0.90964 0.95893 0.88170 1.58724 1.66719 1.07594 1.03215 1.21021 0.76425 0.88908 0.82192 1.90641 1.46080 1.65729 1.36771 1.43571 1.60661 1.16043 1.11953 1.17707 0.98162 0.85327 0.96172 1.21126 0.98527 0.90851 0.99382 1.21163 1.03378 0.98192 0.98041 1.18948 0.95591 0.84904 0.94696 1.86121 1.69346 1.19353 1.46597 1.23967 0.99690 0.88778 0.88110 0.88976 1.23318 1.04299 0.92202 0.98923 1.23380 0.96999 0.92615 0.89543 1.88462 1.67117 1.14624 1.59428 1.23735 0.99382 0.85504 0.96290 1.20148 1.03867 0.92104 0.98813 1.20750 0.97226 0.96641 0.98062 0.92582 0.96521 0.96709 0.91811 0.91887 0.83192 0.83767 0.75095 0.83947 0.85371 0.88829 0.88758 0.88876 0.91535 0.90393 0.89833 0.84848 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16 10 C -0.13 -2.32 4.78 -26.73 -0.13 -2.45 16 11 C 0.07 1.10 3.21 -68.87 -0.22 0.88 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.83 -12.71 8.94 -5.66 -0.05 -12.76 16 14 C 0.53 7.90 6.92 -10.98 -0.08 7.83 16 15 O -0.52 -9.16 13.75 5.54 0.08 -9.09 16 16 N -0.68 -8.21 5.34 -9.83 -0.05 -8.27 16 17 C 0.12 1.48 6.28 -83.62 -0.53 0.96 16 18 C -0.08 -1.02 8.69 -39.41 -0.34 -1.37 16 19 C -0.19 -2.09 8.80 -39.46 -0.35 -2.44 16 20 C 0.10 1.10 6.64 -39.22 -0.26 0.84 16 21 O -0.30 -2.95 9.88 -19.66 -0.19 -3.14 16 22 C 0.05 0.40 2.79 -24.78 -0.07 0.33 16 23 H 0.09 0.65 6.54 -51.93 -0.34 0.31 16 24 C -0.15 -0.87 6.89 -24.48 -0.17 -1.03 16 25 C 0.05 0.30 7.78 38.18 0.30 0.60 16 26 O -0.38 -3.53 11.36 -35.23 -0.40 -3.93 16 27 C 0.03 0.24 7.13 37.88 0.27 0.51 16 28 C -0.13 -1.29 9.98 -39.46 -0.39 -1.69 16 29 C -0.11 -1.07 9.96 -39.41 -0.39 -1.46 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.02 0.35 5.93 -51.93 -0.31 0.05 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.35 5.26 7.55 -39.29 -0.30 4.96 16 36 H 0.35 5.43 8.58 -39.29 -0.34 5.09 16 37 H 0.41 3.92 8.83 -40.82 -0.36 3.56 16 38 H 0.14 2.07 6.30 -52.49 -0.33 1.74 16 39 H 0.13 1.19 5.39 -52.48 -0.28 0.91 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 45 H 0.08 0.76 8.05 -51.93 -0.42 0.35 16 46 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 47 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -33.00 381.90 -8.50 -41.51 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.85 Total: 11.64 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.89 Total: -11.58 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.67 Total: -47.19 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.52 Total: -16.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.00 -8.50 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424130580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.402 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds