Wall clock time and date at job start Tue Mar 31 2020 17:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47136 * 269.99916 * 3 2 1 5 5 H 1.48505 * 109.47264 * 29.99779 * 3 2 1 6 6 H 1.48495 * 109.47375 * 149.99892 * 3 2 1 7 7 C 1.37872 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47032 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46935 * 304.99378 * 11 10 9 13 13 N 1.46891 * 109.47499 * 64.99770 * 11 10 9 14 14 C 1.50703 * 109.47030 * 185.00267 * 11 10 9 15 15 O 1.21296 * 119.99662 * 260.00071 * 14 11 10 16 16 N 1.34775 * 120.00457 * 79.99286 * 14 11 10 17 17 C 1.40108 * 120.00236 * 175.24900 * 16 14 11 18 18 C 1.38846 * 120.01047 * 36.12675 * 17 16 14 19 19 C 1.38087 * 119.98059 * 179.97438 * 18 17 16 20 20 C 1.38718 * 120.02023 * 359.96878 * 19 18 17 21 21 O 1.35974 * 119.99181 * 180.02562 * 20 19 18 22 22 C 1.42901 * 116.99251 * 5.04392 * 21 20 19 23 23 H 1.08993 * 110.91587 * 37.62026 * 22 21 20 24 24 C 1.55309 * 110.84552 * 161.20455 * 22 21 20 25 25 C 1.54940 * 100.94326 * 152.31834 * 24 22 21 26 26 O 1.43647 * 105.13788 * 323.55761 * 25 24 22 27 27 C 1.43236 * 109.97129 * 24.42722 * 26 25 24 28 28 C 1.38728 * 120.02405 * 0.28461 * 20 19 18 29 29 C 1.38082 * 120.01669 * 359.48681 * 28 20 19 30 30 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47143 * 60.00122 * 9 7 2 32 32 H 1.08998 * 109.46777 * 300.00550 * 9 7 2 33 33 H 1.08993 * 109.46996 * 59.99980 * 10 9 7 34 34 H 1.09001 * 109.46771 * 299.99925 * 10 9 7 35 35 H 1.00902 * 111.00563 * 296.04941 * 13 11 10 36 36 H 1.00906 * 111.00245 * 59.99962 * 13 11 10 37 37 H 0.97001 * 119.99811 * 355.25637 * 16 14 11 38 38 H 1.07996 * 120.01311 * 359.97438 * 18 17 16 39 39 H 1.08007 * 119.99519 * 179.97438 * 19 18 17 40 40 H 1.09002 * 111.12264 * 34.40132 * 24 22 21 41 41 H 1.09000 * 111.12454 * 270.24380 * 24 22 21 42 42 H 1.09005 * 110.31011 * 204.63616 * 25 24 22 43 43 H 1.09007 * 110.39218 * 82.51680 * 25 24 22 44 44 H 1.09000 * 109.83258 * 117.80456 * 27 26 25 45 45 H 1.09000 * 109.82583 * 238.77999 * 27 26 25 46 46 H 1.08010 * 119.99065 * 179.71866 * 28 20 19 47 47 H 1.08001 * 120.00909 * 180.25969 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0022 12 1 5.9156 -2.0466 -0.8392 13 7 6.0403 -2.0515 1.2579 14 6 6.0542 -4.0517 -0.1218 15 8 6.4275 -4.6512 0.8643 16 7 6.0886 -4.6514 -1.3283 17 6 6.6476 -5.9294 -1.4597 18 6 6.4854 -6.8657 -0.4474 19 6 7.0362 -8.1253 -0.5778 20 6 7.7506 -8.4555 -1.7201 21 8 8.2922 -9.6961 -1.8481 22 6 7.9936 -10.6434 -0.8207 23 1 6.9650 -10.5338 -0.4775 24 6 8.2616 -12.0927 -1.3104 25 6 8.5880 -12.8000 0.0289 26 8 9.3140 -11.8287 0.7989 27 6 8.9830 -10.5072 0.3566 28 6 7.9174 -7.5186 -2.7296 29 6 7.3633 -6.2603 -2.6026 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6799 0.8912 32 1 3.8752 -0.6802 -0.8888 33 1 3.6587 -3.1500 -0.8892 34 1 3.6580 -3.1504 0.8907 35 1 5.7708 -1.0821 1.3344 36 1 5.7162 -2.5807 2.0536 37 1 5.7265 -4.1981 -2.1057 38 1 5.9288 -6.6091 0.4418 39 1 6.9106 -8.8537 0.2097 40 1 9.1129 -12.1265 -1.9902 41 1 7.3733 -12.5210 -1.7746 42 1 9.2058 -13.6804 -0.1489 43 1 7.6693 -13.0811 0.5438 44 1 8.5161 -9.9511 1.1695 45 1 9.8843 -9.9920 0.0244 46 1 8.4777 -7.7748 -3.6167 47 1 7.4896 -5.5324 -3.3904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424130580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:10 Heat of formation + Delta-G solvation = -117.422671 kcal Electronic energy + Delta-G solvation = -27808.615675 eV Core-core repulsion = 23762.496023 eV Total energy + Delta-G solvation = -4046.119652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85901 -41.19869 -39.82795 -38.32738 -37.09755 -35.44458 -34.81697 -32.73573 -32.11517 -32.01957 -30.28324 -29.78842 -28.21642 -25.70130 -24.46266 -23.95271 -23.19403 -22.23518 -22.00167 -21.11091 -19.50298 -19.19187 -18.65961 -18.37125 -17.80286 -17.40055 -16.55502 -16.34980 -16.09839 -16.02156 -15.90443 -15.79612 -15.51978 -15.35512 -14.93183 -14.73763 -14.56400 -14.42394 -14.23135 -14.15233 -13.71244 -13.57870 -13.47856 -13.21932 -13.05807 -12.70440 -12.59544 -12.31136 -12.09580 -11.99008 -11.86039 -11.71718 -11.69234 -11.40943 -10.98576 -10.77110 -10.73209 -10.65647 -10.03771 -9.69037 -8.78624 -8.29720 -6.35417 0.22971 0.31862 1.38554 1.40980 1.51628 1.52793 1.92409 2.04164 2.36388 2.72723 2.85266 3.06004 3.23848 3.60350 3.68749 3.69932 3.73318 3.85841 3.90471 4.04688 4.06542 4.15925 4.19971 4.20353 4.34950 4.52061 4.54362 4.57668 4.60996 4.71285 4.75400 4.82424 4.85308 4.94209 4.97892 5.05161 5.29347 5.32182 5.36034 5.40968 5.46630 5.62715 5.78437 5.84204 6.03756 6.24873 6.33576 6.41698 6.46928 6.73381 7.11337 7.29513 8.86936 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.001871 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.804203 B =14965.528595 C =15015.638581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.237 1.237 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.007 4.007 10 C -0.120 4.120 11 C 0.085 3.915 12 H 0.126 0.874 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.551 6.551 16 N -0.662 5.662 17 C 0.098 3.902 18 C -0.100 4.100 19 C -0.193 4.193 20 C 0.102 3.898 21 O -0.304 6.304 22 C 0.046 3.954 23 H 0.099 0.901 24 C -0.142 4.142 25 C 0.045 3.955 26 O -0.400 6.400 27 C 0.028 3.972 28 C -0.131 4.131 29 C -0.096 4.096 30 H 0.266 0.734 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.356 0.644 36 H 0.345 0.655 37 H 0.426 0.574 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.157 0.843 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.825 -21.062 -7.273 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.160 1.160 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.160 4.160 11 C -0.031 4.031 12 H 0.144 0.856 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.427 6.427 16 N -0.309 5.309 17 C 0.004 3.996 18 C -0.120 4.120 19 C -0.212 4.212 20 C 0.057 3.943 21 O -0.218 6.218 22 C -0.010 4.010 23 H 0.117 0.883 24 C -0.180 4.180 25 C -0.030 4.030 26 O -0.320 6.320 27 C -0.049 4.049 28 C -0.150 4.150 29 C -0.115 4.115 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.175 0.825 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 20.945 -21.603 -6.812 30.851 hybrid contribution -2.008 1.181 0.293 2.348 sum 18.937 -20.422 -6.519 28.604 Atomic orbital electron populations 1.70085 1.08565 1.28212 1.52491 1.26096 0.95627 1.03831 0.94015 0.85601 0.79687 0.77665 0.79329 1.18945 1.21750 1.16014 1.21444 0.92269 0.92866 1.50691 0.95570 1.19513 0.93737 0.93785 0.97398 1.22048 0.93293 0.98875 1.01789 1.21431 0.93327 0.91592 0.96715 0.85591 1.58746 1.66513 1.07784 1.03245 1.21003 0.76318 0.88804 0.82613 1.90638 1.47775 1.66288 1.38027 1.43392 1.59920 1.16003 1.11551 1.17907 0.99502 0.85113 0.97065 1.21057 0.99598 0.92163 0.99213 1.21233 1.03381 0.97780 0.98794 1.19122 0.95104 0.85504 0.94608 1.86124 1.69278 1.19179 1.47183 1.24139 0.99750 0.89457 0.87690 0.88293 1.23340 1.05161 0.90614 0.98845 1.23620 0.97642 0.92399 0.89377 1.88432 1.67965 1.15249 1.60403 1.23686 0.99149 0.85450 0.96625 1.20503 1.03436 0.91759 0.99286 1.21031 0.95686 0.97218 0.97613 0.92566 0.95594 0.94893 0.91475 0.93908 0.82794 0.84139 0.73497 0.86342 0.84440 0.88892 0.86794 0.87282 0.90335 0.90647 0.90836 0.82526 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 2 C 0.00 0.05 5.47 84.65 0.46 0.52 16 3 Si 0.95 41.77 27.47 68.60 1.88 43.65 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 7 C -0.53 -29.38 9.66 25.60 0.25 -29.14 16 8 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 9 C -0.01 -0.28 3.81 29.85 0.11 -0.17 16 10 C -0.12 -4.17 4.78 30.59 0.15 -4.02 16 11 C 0.08 2.38 3.21 44.17 0.14 2.52 16 12 H 0.13 2.93 8.14 -2.38 -0.02 2.91 16 13 N -0.83 -24.08 8.94 -171.81 -1.54 -25.62 16 14 C 0.52 15.32 6.92 87.66 0.61 15.92 16 15 O -0.55 -19.65 13.75 -3.08 -0.04 -19.70 16 16 N -0.66 -15.17 5.34 -303.39 -1.62 -16.79 16 17 C 0.10 2.30 6.28 38.11 0.24 2.54 16 18 C -0.10 -2.64 8.69 22.38 0.19 -2.44 16 19 C -0.19 -4.24 8.80 22.35 0.20 -4.04 16 20 C 0.10 2.04 6.64 22.50 0.15 2.18 16 21 O -0.30 -5.51 9.88 -93.26 -0.92 -6.43 16 22 C 0.05 0.67 2.79 31.86 0.09 0.76 16 23 H 0.10 1.29 6.54 -2.39 -0.02 1.27 16 24 C -0.14 -1.38 6.89 32.05 0.22 -1.16 16 25 C 0.05 0.47 7.78 72.65 0.56 1.03 16 26 O -0.40 -7.27 11.36 -148.98 -1.69 -8.97 16 27 C 0.03 0.47 7.13 72.45 0.52 0.99 16 28 C -0.13 -2.28 9.98 22.35 0.22 -2.06 16 29 C -0.10 -1.69 9.96 22.38 0.22 -1.46 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.03 1.04 5.93 -2.38 -0.01 1.02 16 32 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.36 9.75 7.55 -89.69 -0.68 9.07 16 36 H 0.35 10.56 8.58 -89.69 -0.77 9.79 16 37 H 0.43 7.14 8.83 -92.71 -0.82 6.32 16 38 H 0.12 3.66 6.30 -2.91 -0.02 3.65 16 39 H 0.14 2.60 5.39 -2.91 -0.02 2.58 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.08 1.27 7.53 -2.39 -0.02 1.25 16 45 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 46 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -73.63 381.90 -0.59 -74.22 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -1.30 Total: 36.04 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 4.34 Total: -18.03 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -2.86 Total: -100.77 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -2.66 Total: -35.10 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Total: -73.63 -0.59 -74.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424130580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.207 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds