Wall clock time and date at job start Tue Mar 31 2020 17:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47236 * 270.00870 * 3 2 1 5 5 H 1.48494 * 109.46844 * 30.00674 * 3 2 1 6 6 H 1.48497 * 109.46854 * 150.00517 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00459 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99667 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.46598 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99415 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46895 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47265 * 64.99570 * 12 11 10 14 14 C 1.34756 * 117.00280 * 180.02562 * 13 12 11 15 15 O 1.21532 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.47285 * 120.00510 * 180.02562 * 14 13 12 17 17 C 1.40048 * 120.61371 * 354.61865 * 16 14 13 18 18 C 1.38301 * 118.36176 * 180.26783 * 17 16 14 19 19 C 1.38393 * 119.51896 * 359.72892 * 18 17 16 20 20 N 1.31846 * 121.23069 * 0.02562 * 19 18 17 21 21 C 1.32423 * 121.77988 * 359.97438 * 20 19 18 22 22 N 1.38227 * 119.83077 * 180.02562 * 21 20 19 23 23 C 1.46843 * 110.99891 * 324.06535 * 22 21 20 24 24 C 1.53036 * 109.52442 * 185.83959 * 23 22 21 25 25 C 1.53116 * 109.28014 * 300.82248 * 24 23 22 26 26 C 1.53126 * 109.21343 * 57.62035 * 25 24 23 27 27 C 1.46843 * 111.00140 * 88.27939 * 22 21 20 28 28 H 0.96995 * 120.00287 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47004 * 60.00103 * 9 7 2 30 30 H 1.08997 * 109.47282 * 299.99261 * 9 7 2 31 31 H 1.08992 * 109.47845 * 59.99781 * 11 10 9 32 32 H 1.09002 * 109.47233 * 299.99853 * 11 10 9 33 33 H 1.08997 * 109.47040 * 305.00163 * 12 11 10 34 34 H 1.09001 * 109.47314 * 184.99673 * 12 11 10 35 35 H 1.08004 * 120.81402 * 0.02562 * 17 16 14 36 36 H 1.08004 * 120.23850 * 179.71614 * 18 17 16 37 37 H 1.07997 * 119.38640 * 180.02562 * 19 18 17 38 38 H 1.08993 * 109.46278 * 65.82236 * 23 22 21 39 39 H 1.09000 * 109.45408 * 305.85040 * 23 22 21 40 40 H 1.09001 * 109.50764 * 180.87619 * 24 23 22 41 41 H 1.09000 * 109.50286 * 60.76036 * 24 23 22 42 42 H 1.09002 * 109.52784 * 177.55881 * 25 24 23 43 43 H 1.08994 * 109.52219 * 297.68455 * 25 24 23 44 44 H 1.08998 * 109.50302 * 62.32094 * 26 25 24 45 45 H 1.08995 * 109.50158 * 182.43821 * 26 25 24 46 46 H 1.09007 * 109.45816 * 294.17339 * 27 22 21 47 47 H 1.08997 * 109.46367 * 54.15018 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0009 12 6 5.8070 -4.1324 -0.0015 13 8 5.3728 -4.7488 -1.2424 14 6 5.6447 -6.0589 -1.4027 15 8 6.2284 -6.6697 -0.5290 16 6 5.2346 -6.7506 -2.6366 17 6 4.4645 -6.0903 -3.6021 18 6 4.1008 -6.7860 -4.7407 19 6 4.5078 -8.0996 -4.8964 20 7 5.2369 -8.7027 -3.9783 21 6 5.6133 -8.0843 -2.8694 22 7 6.3780 -8.7553 -1.9337 23 6 5.9875 -10.1684 -1.8504 24 6 6.7503 -10.8434 -0.7082 25 6 8.2550 -10.7246 -0.9655 26 6 8.6285 -9.2455 -1.0972 27 6 7.8101 -8.6165 -2.2272 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 5.8152 -2.1705 0.8889 32 1 5.8152 -2.1706 -0.8910 33 1 5.3311 -4.6357 0.8401 34 1 6.8898 -4.2195 0.0881 35 1 4.1589 -5.0644 -3.4592 36 1 3.5033 -6.3077 -5.5027 37 1 4.2229 -8.6407 -5.7865 38 1 6.2251 -10.6668 -2.7902 39 1 4.9161 -10.2385 -1.6629 40 1 6.4718 -11.8959 -0.6566 41 1 6.5025 -10.3542 0.2338 42 1 8.8029 -11.1659 -0.1329 43 1 8.5094 -11.2480 -1.8871 44 1 8.4111 -8.7305 -0.1615 45 1 9.6911 -9.1573 -1.3235 46 1 8.0392 -9.1222 -3.1652 47 1 8.0624 -7.5596 -2.3133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815190880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:26 Heat of formation + Delta-G solvation = -80.272556 kcal Electronic energy + Delta-G solvation = -28792.311393 eV Core-core repulsion = 24747.802691 eV Total energy + Delta-G solvation = -4044.508702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22727 -39.71717 -38.56872 -37.14024 -35.93915 -34.09958 -32.95248 -32.67321 -31.07552 -30.48706 -29.92493 -27.61255 -25.31824 -24.87845 -23.36975 -22.72236 -22.09779 -21.87035 -21.01494 -19.89360 -18.04686 -17.63083 -17.12148 -16.83701 -16.43137 -16.19567 -15.56102 -15.38752 -15.11019 -14.80868 -14.78353 -14.45911 -14.20050 -13.99508 -13.84709 -13.44614 -13.35129 -13.13444 -12.90247 -12.73471 -12.49151 -12.43937 -12.26998 -11.70857 -11.41346 -11.15650 -11.00486 -10.88253 -10.76744 -10.71994 -10.66533 -10.39958 -10.33545 -10.15838 -10.00436 -9.88965 -9.44506 -9.22291 -8.92310 -8.52730 -8.50293 -6.13848 -4.13238 0.37038 0.93585 2.62182 2.73704 3.22423 3.28718 3.29652 3.30414 3.55287 4.15286 4.32776 4.48043 4.54745 4.61365 4.64423 4.65261 4.71685 4.81838 4.99508 5.02317 5.15946 5.17125 5.18342 5.23744 5.28108 5.40105 5.40853 5.47579 5.62530 5.65751 5.69355 5.70517 5.74699 5.79549 5.86951 5.92654 5.95772 5.99678 6.15122 6.22519 6.53910 6.60237 6.65931 6.94887 7.02840 7.55562 7.56097 7.92823 7.98545 8.61765 8.97707 9.44882 10.99148 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002486 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.969823 B =11258.150314 C =12185.945304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.057 3.943 12 C 0.079 3.921 13 O -0.344 6.344 14 C 0.505 3.495 15 O -0.474 6.474 16 C -0.159 4.159 17 C -0.007 4.007 18 C -0.195 4.195 19 C 0.143 3.857 20 N -0.524 5.524 21 C 0.356 3.644 22 N -0.466 5.466 23 C 0.064 3.936 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.115 4.115 27 C 0.074 3.926 28 H 0.267 0.733 29 H 0.004 0.996 30 H 0.000 1.000 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.040 0.960 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.186 -19.255 -8.376 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.005 3.995 13 O -0.261 6.261 14 C 0.347 3.653 15 O -0.361 6.361 16 C -0.164 4.164 17 C -0.033 4.033 18 C -0.216 4.216 19 C -0.015 4.015 20 N -0.237 5.237 21 C 0.126 3.874 22 N -0.187 5.187 23 C -0.063 4.063 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.051 4.051 28 H 0.077 0.923 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.282 -20.116 -7.709 27.617 hybrid contribution 0.266 1.776 -0.537 1.874 sum 17.547 -18.340 -8.245 26.688 Atomic orbital electron populations 1.69869 1.06061 1.27119 1.50235 1.24771 0.94812 0.98748 0.94638 0.86849 0.80341 0.83763 0.78778 1.19904 1.20761 1.19103 1.20879 0.88199 0.95359 1.51302 0.89924 1.20632 0.96313 0.79300 0.94442 1.87985 1.16685 1.29684 1.95077 1.22407 0.86079 0.92968 1.00564 1.23128 0.99032 0.92927 0.84429 1.86620 1.74186 1.23780 1.41500 1.20585 0.77226 0.80843 0.86618 1.90874 1.37111 1.66300 1.41780 1.19841 1.05964 0.94777 0.95834 1.22102 0.89844 1.00830 0.90541 1.22150 1.03669 0.96087 0.99644 1.22839 0.90356 0.92064 0.96248 1.67931 1.14805 1.39155 1.01786 1.19743 0.91822 0.88786 0.87070 1.59497 1.04110 1.13692 1.41395 1.22038 0.99970 0.85877 0.98436 1.21608 0.94849 0.99919 0.99166 1.21579 0.96246 0.96444 1.01540 1.21578 0.98363 0.95721 0.99630 1.22003 0.84584 1.01207 0.97315 0.92329 0.97858 0.98202 0.91824 0.93126 0.90311 0.90361 0.82440 0.83646 0.82164 0.92977 0.90902 0.91333 0.90746 0.91676 0.92332 0.90185 0.91369 0.94156 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -15.37 9.99 -34.44 -0.34 -15.71 16 8 H 0.08 2.69 8.06 -52.49 -0.42 2.26 16 9 C 0.17 4.22 4.76 36.01 0.17 4.39 16 10 O -0.38 -8.67 10.30 -38.80 -0.40 -9.07 16 11 C 0.06 0.97 6.33 37.16 0.24 1.21 16 12 C 0.08 1.20 5.86 37.16 0.22 1.41 16 13 O -0.34 -5.65 9.53 -43.43 -0.41 -6.07 16 14 C 0.51 7.90 7.88 34.41 0.27 8.17 16 15 O -0.47 -7.88 14.50 -19.29 -0.28 -8.16 16 16 C -0.16 -2.19 5.91 -104.66 -0.62 -2.80 16 17 C -0.01 -0.09 9.73 -38.88 -0.38 -0.46 16 18 C -0.20 -1.80 10.08 -39.50 -0.40 -2.20 16 19 C 0.14 1.32 11.16 -17.49 -0.20 1.13 16 20 N -0.52 -6.13 9.21 -12.19 -0.11 -6.24 16 21 C 0.36 4.65 5.57 -155.20 -0.86 3.78 16 22 N -0.47 -5.83 2.76 -173.01 -0.48 -6.30 16 23 C 0.06 0.69 4.91 -3.84 -0.02 0.67 16 24 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 25 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 26 C -0.12 -1.05 6.10 -26.64 -0.16 -1.22 16 27 C 0.07 0.81 4.96 -3.83 -0.02 0.79 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 30 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.16 1.86 7.71 -52.48 -0.40 1.45 16 36 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.05 0.55 7.79 -51.93 -0.40 0.15 16 39 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -34.09 387.76 -9.76 -43.85 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.50 Total: -2.44 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.52 Total: -1.18 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.18 Total: -39.21 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.09 Total: -23.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.09 -9.76 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815190880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.422 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds