Wall clock time and date at job start Tue Mar 31 2020 17:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00025 * 2 1 4 4 H 1.48491 * 109.47185 * 84.79902 * 3 2 1 5 5 H 1.48502 * 109.46855 * 324.79748 * 3 2 1 6 6 H 1.48502 * 109.46985 * 204.80228 * 3 2 1 7 7 C 1.38819 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99797 * 19.67225 * 7 2 1 9 9 N 1.36938 * 120.00038 * 199.67165 * 7 2 1 10 10 C 1.47421 * 125.64822 * 35.25948 * 9 7 2 11 11 C 1.54906 * 104.83352 * 204.09223 * 10 9 7 12 12 C 1.55166 * 101.58155 * 322.99431 * 11 10 9 13 13 C 1.47024 * 125.64618 * 214.95881 * 9 7 2 14 14 H 1.09000 * 109.88584 * 59.55538 * 13 9 7 15 15 C 1.53002 * 109.87987 * 298.39166 * 13 9 7 16 16 H 1.09004 * 109.58538 * 53.96508 * 15 13 9 17 17 C 1.53191 * 109.58725 * 293.68339 * 15 13 9 18 18 C 1.53038 * 109.31138 * 185.57750 * 17 15 13 19 19 C 1.53046 * 109.53986 * 61.36563 * 18 17 15 20 20 C 1.53194 * 109.30825 * 298.63482 * 19 18 17 21 21 N 1.46921 * 109.58597 * 174.39275 * 15 13 9 22 22 C 1.34780 * 120.63082 * 353.39630 * 21 15 13 23 23 O 1.21280 * 119.99965 * 2.36291 * 22 21 15 24 24 C 1.50702 * 120.00132 * 182.36110 * 22 21 15 25 25 C 1.52997 * 109.47315 * 181.72298 * 24 22 21 26 26 F 1.39902 * 109.46958 * 59.97043 * 25 24 22 27 27 F 1.39898 * 109.47273 * 179.97438 * 25 24 22 28 28 F 1.39899 * 109.47113 * 299.97451 * 25 24 22 29 29 H 0.96995 * 120.00509 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.37219 * 322.93777 * 10 9 7 31 31 H 1.09000 * 110.36550 * 85.14783 * 10 9 7 32 32 H 1.09003 * 111.00431 * 81.06588 * 11 10 9 33 33 H 1.08998 * 111.00863 * 204.92479 * 11 10 9 34 34 H 1.09005 * 110.71703 * 153.86540 * 12 11 10 35 35 H 1.08998 * 110.71850 * 276.95862 * 12 11 10 36 36 H 1.09000 * 109.49847 * 305.52843 * 17 15 13 37 37 H 1.08995 * 109.50067 * 65.62611 * 17 15 13 38 38 H 1.09002 * 109.45999 * 181.38160 * 18 17 15 39 39 H 1.09000 * 109.46495 * 301.34574 * 18 17 15 40 40 H 1.08997 * 109.49608 * 58.58372 * 19 18 17 41 41 H 1.08994 * 109.50268 * 178.68273 * 19 18 17 42 42 H 1.09004 * 109.58452 * 174.42039 * 20 19 18 43 43 H 1.08998 * 109.58548 * 294.84647 * 20 19 18 44 44 H 1.09003 * 109.46945 * 301.72561 * 24 22 21 45 45 H 1.08998 * 109.47001 * 61.72370 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3877 2.1099 1.3942 5 1 1.5068 2.6184 -0.8071 6 1 3.5983 1.4109 -0.5873 7 6 2.0103 -1.2022 0.0005 8 1 1.5175 -2.1103 -0.3139 9 7 3.3197 -1.2366 0.3998 10 6 3.9149 -0.4103 1.4657 11 6 5.4244 -0.3482 1.1232 12 6 5.6789 -1.7780 0.5769 13 6 4.3634 -2.1081 -0.1595 14 1 4.4781 -1.9121 -1.2256 15 6 3.9919 -3.5752 0.0657 16 1 2.9949 -3.7648 -0.3322 17 6 4.0139 -3.8861 1.5655 18 6 3.7788 -5.3837 1.7754 19 6 4.9002 -6.1774 1.1010 20 6 4.8881 -5.8923 -0.4041 21 7 4.9681 -4.4399 -0.6110 22 6 5.9189 -3.9108 -1.4064 23 8 6.0012 -2.7077 -1.5353 24 6 6.8797 -4.8143 -2.1356 25 6 7.8758 -3.9657 -2.9284 26 9 8.5863 -3.1394 -2.0512 27 9 8.7681 -4.8044 -3.6049 28 9 7.1838 -3.1775 -3.8541 29 1 -0.4851 0.8400 0.0004 30 1 3.4824 0.5901 1.4565 31 1 3.7639 -0.8791 2.4381 32 1 5.6209 0.4030 0.3582 33 1 6.0203 -0.1595 2.0162 34 1 6.5219 -1.7824 -0.1141 35 1 5.8485 -2.4787 1.3944 36 1 4.9828 -3.6083 1.9805 37 1 3.2277 -3.3209 2.0659 38 1 3.7695 -5.6038 2.8429 39 1 2.8209 -5.6657 1.3383 40 1 5.8607 -5.8780 1.5203 41 1 4.7448 -7.2428 1.2707 42 1 5.7443 -6.3760 -0.8745 43 1 3.9650 -6.2733 -0.8408 44 1 7.4189 -5.4288 -1.4146 45 1 6.3258 -5.4577 -2.8191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025208751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:17 Heat of formation + Delta-G solvation = -127.911154 kcal Electronic energy + Delta-G solvation = -32077.946112 eV Core-core repulsion = 27489.514905 eV Total energy + Delta-G solvation = -4588.431207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.10073 -47.65809 -47.49144 -40.79517 -37.67645 -37.00117 -33.22017 -32.52322 -32.04039 -30.85043 -29.80346 -27.50973 -25.17909 -24.20558 -24.09522 -22.73201 -21.18686 -20.61584 -19.84522 -19.00063 -18.56008 -18.09776 -17.44429 -17.10574 -16.19383 -15.79468 -15.43995 -15.35952 -14.77986 -14.50897 -14.40522 -14.26172 -14.01463 -13.90382 -13.69859 -13.66755 -13.63909 -13.50915 -13.19281 -13.08824 -12.86903 -12.49021 -12.24887 -12.03345 -11.85820 -11.48047 -11.38203 -11.09437 -11.05200 -10.81657 -10.63323 -10.54397 -10.30572 -9.89329 -9.73569 -9.67129 -9.55122 -8.85103 -8.44988 -8.23570 -6.69000 -5.92569 -3.30926 2.47616 2.54424 3.01547 3.40218 3.54551 3.63029 3.65078 3.90937 3.95515 4.49439 4.62268 4.66333 4.79889 4.87266 4.89543 4.97780 5.15397 5.26054 5.32333 5.39046 5.42192 5.63148 5.67634 5.76688 5.79835 5.84637 5.90829 6.02086 6.15152 6.26801 6.27604 6.30648 6.52056 6.60118 6.67144 6.74257 6.87071 6.93374 7.03582 7.39737 7.46374 7.98421 8.23105 8.43338 8.95666 9.75918 10.37086 11.23755 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.004906 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.466369 B = 5706.382854 C = 6830.543116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.032 3.968 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.121 3.879 11 C -0.138 4.138 12 C -0.126 4.126 13 C 0.160 3.840 14 H 0.084 0.916 15 C 0.139 3.861 16 H 0.079 0.921 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.133 4.133 20 C 0.104 3.896 21 N -0.596 5.596 22 C 0.501 3.499 23 O -0.490 6.490 24 C -0.197 4.197 25 C 0.472 3.528 26 F -0.174 7.174 27 F -0.188 7.188 28 F -0.171 7.171 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.402 -15.804 -0.498 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.167 4.167 3 Si 0.716 3.284 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.329 5.329 10 C -0.003 4.003 11 C -0.177 4.177 12 C -0.163 4.163 13 C 0.054 3.946 14 H 0.102 0.898 15 C 0.036 3.964 16 H 0.097 0.903 17 C -0.165 4.165 18 C -0.159 4.159 19 C -0.171 4.171 20 C -0.019 4.019 21 N -0.330 5.330 22 C 0.287 3.713 23 O -0.366 6.366 24 C -0.238 4.238 25 C 0.417 3.583 26 F -0.155 7.155 27 F -0.169 7.169 28 F -0.152 7.152 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.203 -15.024 -0.631 21.384 hybrid contribution 0.403 0.849 0.009 0.940 sum 15.607 -14.175 -0.623 21.092 Atomic orbital electron populations 1.69821 1.05857 1.26629 1.52678 1.25356 0.95091 0.97800 0.98497 0.86758 0.80570 0.84263 0.76812 1.21718 1.23299 1.19148 1.18472 0.83403 0.94009 1.41163 0.90180 1.44848 1.06467 1.44483 1.37112 1.21827 0.91348 0.95146 0.91994 1.22791 0.97069 0.98028 0.99792 1.23112 0.98904 0.95501 0.98830 1.21684 0.87029 0.86957 0.98978 0.89836 1.22061 0.90897 0.92209 0.91253 0.90293 1.22009 1.03016 0.94944 0.96566 1.21552 0.98176 0.95993 1.00165 1.21903 1.00086 1.00206 0.94886 1.21786 1.02388 0.80714 0.97033 1.48093 1.31111 1.07223 1.46612 1.19645 0.81970 0.88529 0.81146 1.90845 1.70118 1.13623 1.61969 1.23073 0.98249 1.00185 1.02287 1.19770 0.80767 0.79191 0.78580 1.93221 1.79858 1.73804 1.68630 1.93180 1.70651 1.71461 1.81641 1.93245 1.78793 1.75777 1.67376 0.92808 0.94450 0.95670 0.91920 0.92403 0.89239 0.92450 0.91532 0.89586 0.92090 0.91822 0.91662 0.91043 0.90372 0.90956 0.85097 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 2 C 0.03 0.96 5.44 -17.43 -0.09 0.86 16 3 Si 0.88 23.50 24.88 -169.99 -4.23 19.27 16 4 H -0.29 -7.51 6.82 56.52 0.39 -7.12 16 5 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 6 H -0.27 -7.09 7.09 56.52 0.40 -6.69 16 7 C -0.24 -6.82 10.10 -15.06 -0.15 -6.97 16 8 H 0.08 2.37 7.49 -52.49 -0.39 1.98 16 9 N -0.60 -14.58 2.32 -162.57 -0.38 -14.96 16 10 C 0.12 2.74 6.27 -2.53 -0.02 2.72 16 11 C -0.14 -2.69 7.09 -24.58 -0.17 -2.86 16 12 C -0.13 -2.30 5.10 -24.89 -0.13 -2.43 16 13 C 0.16 3.27 2.28 -66.95 -0.15 3.12 16 14 H 0.08 1.97 5.81 -52.44 -0.30 1.67 16 15 C 0.14 2.35 2.71 -67.60 -0.18 2.17 16 16 H 0.08 1.52 7.39 -51.93 -0.38 1.14 16 17 C -0.13 -1.92 4.96 -26.61 -0.13 -2.05 16 18 C -0.12 -1.38 5.88 -26.69 -0.16 -1.54 16 19 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 20 C 0.10 0.90 6.34 -3.71 -0.02 0.88 16 21 N -0.60 -7.69 2.95 -165.22 -0.49 -8.18 16 22 C 0.50 6.73 7.00 -10.98 -0.08 6.66 16 23 O -0.49 -8.60 7.74 5.56 0.04 -8.55 16 24 C -0.20 -1.74 4.14 -27.88 -0.12 -1.86 16 25 C 0.47 5.43 2.89 37.16 0.11 5.54 16 26 F -0.17 -2.34 16.44 2.25 0.04 -2.30 16 27 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 28 F -0.17 -2.43 16.36 2.25 0.04 -2.39 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.04 0.92 3.31 -51.93 -0.17 0.75 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.67 5.63 -51.87 -0.29 1.38 16 35 H 0.06 0.95 5.20 -51.93 -0.27 0.68 16 36 H 0.07 0.99 5.53 -51.93 -0.29 0.70 16 37 H 0.09 1.55 7.98 -51.93 -0.41 1.13 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.13 0.75 7.50 -51.93 -0.39 0.36 16 45 H 0.13 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -33.02 342.56 -6.63 -39.65 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.17 Total: -1.41 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.46 Total: 2.94 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.09 Total: -50.45 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.04 Total: -8.55 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.60 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.23 Total: 19.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.02 -6.63 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025208751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.264 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds