Wall clock time and date at job start Tue Mar 31 2020 17:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00473 * 2 1 4 4 H 1.48499 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47186 * 300.00436 * 3 2 1 6 6 H 1.48500 * 109.46796 * 60.00293 * 3 2 1 7 7 C 1.38823 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49526 * 0.02562 * 9 7 2 11 11 C 1.53941 * 86.24031 * 155.42499 * 10 9 7 12 12 C 1.47807 * 134.58015 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.77292 * 90.25394 * 12 9 7 14 14 C 1.53000 * 113.83860 * 318.90328 * 12 9 7 15 15 N 1.46497 * 109.47081 * 78.41850 * 14 12 9 16 16 C 1.34780 * 120.00291 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99815 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00401 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.47254 * 355.10059 * 18 16 15 20 20 C 1.52998 * 109.47368 * 235.10501 * 18 16 15 21 21 C 1.53001 * 109.47330 * 179.97438 * 20 18 16 22 22 C 1.52993 * 109.47203 * 60.00244 * 21 20 18 23 23 C 1.53009 * 109.46835 * 299.99760 * 22 21 20 24 24 C 1.52999 * 109.47346 * 115.10169 * 18 16 15 25 25 H 1.08996 * 109.46949 * 60.00218 * 24 18 16 26 26 C 1.52992 * 109.47103 * 300.00141 * 24 18 16 27 27 F 1.39902 * 109.47466 * 65.71385 * 26 24 18 28 28 F 1.39900 * 109.47109 * 185.71207 * 26 24 18 29 29 F 1.39900 * 109.47187 * 305.71421 * 26 24 18 30 30 H 0.97007 * 119.99774 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.77055 * 41.06244 * 10 9 7 32 32 H 1.09004 * 113.76540 * 269.78223 * 10 9 7 33 33 H 1.09006 * 113.74059 * 137.89527 * 11 10 9 34 34 H 1.08994 * 113.74442 * 269.20190 * 11 10 9 35 35 H 1.08993 * 109.47550 * 198.42488 * 14 12 9 36 36 H 1.09005 * 109.47034 * 318.42537 * 14 12 9 37 37 H 0.97007 * 120.00346 * 0.02562 * 15 14 12 38 38 H 1.09005 * 109.47220 * 299.99629 * 20 18 16 39 39 H 1.08996 * 109.47420 * 59.99533 * 20 18 16 40 40 H 1.09010 * 109.46919 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.47016 * 299.99904 * 21 20 18 42 42 H 1.09002 * 109.47496 * 59.99439 * 22 21 20 43 43 H 1.09000 * 109.47137 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47028 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47237 * 300.00249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1035 -2.7573 -0.0005 11 6 0.3438 -4.0846 -0.6394 12 6 1.7182 -3.8130 -0.0015 13 1 1.8315 -4.2382 0.9958 14 6 2.8986 -4.1284 -0.9225 15 7 4.1475 -3.7261 -0.2708 16 6 5.3253 -3.9091 -0.9000 17 8 5.3511 -4.4064 -2.0059 18 6 6.6100 -3.4958 -0.2295 19 1 6.3838 -2.9938 0.7112 20 6 7.3789 -2.5411 -1.1449 21 6 8.6830 -2.1210 -0.4639 22 6 9.5363 -3.3604 -0.1876 23 6 8.7674 -4.3152 0.7279 24 6 7.4631 -4.7356 0.0464 25 1 7.6893 -5.2376 -0.8943 26 6 6.6942 -5.6903 0.9618 27 9 5.5678 -6.1758 0.2890 28 9 7.5210 -6.7607 1.3194 29 9 6.2906 -5.0075 2.1143 30 1 -0.4850 0.8401 0.0004 31 1 -0.7170 -2.1391 -0.6558 32 1 -0.5278 -2.8709 0.9971 33 1 -0.1632 -4.9599 -0.2333 34 1 0.3543 -4.0656 -1.7291 35 1 2.9239 -5.1986 -1.1272 36 1 2.7850 -3.5820 -1.8588 37 1 4.1268 -3.3280 0.6135 38 1 7.6053 -3.0431 -2.0857 39 1 6.7712 -1.6579 -1.3415 40 1 9.2310 -1.4411 -1.1164 41 1 8.4563 -1.6189 0.4766 42 1 9.7629 -3.8626 -1.1281 43 1 10.4652 -3.0612 0.2980 44 1 9.3755 -5.1981 0.9251 45 1 8.5407 -3.8131 1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038368917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:44 Heat of formation + Delta-G solvation = -159.899082 kcal Electronic energy + Delta-G solvation = -31169.374828 eV Core-core repulsion = 26579.556520 eV Total energy + Delta-G solvation = -4589.818308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.19968 -47.69906 -47.61633 -40.15112 -38.29116 -37.47279 -34.04329 -32.25347 -32.13690 -31.40097 -28.07166 -27.67269 -25.93709 -23.77829 -23.36614 -22.34348 -21.90343 -20.46584 -20.08271 -19.10199 -18.42854 -18.32089 -17.78720 -17.17810 -16.40533 -15.76241 -15.32724 -14.93833 -14.76899 -14.58592 -14.51034 -14.22939 -14.16168 -14.02213 -13.95546 -13.77774 -13.71025 -13.69105 -13.31972 -13.08020 -12.81175 -12.47965 -12.14663 -11.81646 -11.71316 -11.50928 -11.43165 -11.10454 -11.02341 -10.99356 -10.82882 -10.75434 -10.55312 -10.53501 -10.01135 -9.74729 -9.61128 -9.27079 -8.80895 -8.57314 -6.89452 -5.77044 -3.09184 2.61465 2.81098 3.35881 3.39493 3.41567 3.44052 3.61624 3.77878 3.95293 4.40937 4.44498 4.50353 4.64349 4.78922 4.86613 4.95224 4.99406 5.04356 5.12785 5.18490 5.39955 5.45063 5.51806 5.62005 5.63255 5.72285 5.73730 5.80043 5.86704 5.93114 5.98210 6.12776 6.14273 6.32506 6.41804 6.62972 6.72254 6.89053 7.24738 7.41570 7.59075 7.86110 7.97697 8.51283 9.03607 9.70386 10.59635 11.39807 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.004239 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.565766 B = 6603.479235 C = 7941.764369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.125 3.875 15 N -0.707 5.707 16 C 0.511 3.489 17 O -0.544 6.544 18 C -0.104 4.104 19 H 0.099 0.901 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.123 0.877 26 C 0.448 3.552 27 F -0.172 7.172 28 F -0.185 7.185 29 F -0.181 7.181 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.048 -9.914 1.926 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.356 5.356 16 C 0.296 3.704 17 O -0.422 6.422 18 C -0.126 4.126 19 H 0.117 0.883 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.137 4.137 25 H 0.141 0.859 26 C 0.394 3.606 27 F -0.154 7.154 28 F -0.166 7.166 29 F -0.162 7.162 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.040 -9.936 1.155 19.759 hybrid contribution 0.159 0.980 0.826 1.291 sum 17.199 -8.956 1.980 19.492 Atomic orbital electron populations 1.69829 1.04956 1.25080 1.56772 1.24758 0.95614 0.97370 1.02708 0.86130 0.78696 0.84152 0.77270 1.20567 1.21761 1.21829 1.18974 0.90123 0.81898 1.43437 0.90387 1.46119 1.02277 0.98529 1.85971 1.22188 0.87946 0.89599 0.96887 1.23755 0.96161 0.98995 1.00551 1.22547 0.92394 0.87594 0.95685 0.93303 1.21747 0.82200 0.98756 0.97266 1.46004 1.06107 1.62266 1.21196 1.20260 0.85049 0.78862 0.86269 1.90661 1.87346 1.44511 1.19725 1.21343 0.93486 0.95953 1.01814 0.88297 1.21411 0.95841 0.98547 0.98175 1.21599 0.95585 0.97477 1.01289 1.21509 0.98249 0.95820 0.99704 1.21643 0.93598 1.00839 0.99407 1.22445 0.96357 0.95034 0.99876 0.85899 1.20662 0.78639 0.80908 0.80416 1.93254 1.53571 1.88825 1.79702 1.93159 1.72027 1.58750 1.92678 1.93180 1.91292 1.79429 1.52305 0.93769 0.90856 0.95618 0.92797 0.90516 0.92135 0.90970 0.76378 0.90286 0.90403 0.91025 0.91355 0.91320 0.91006 0.90199 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 11.38 55.49 0.63 -26.23 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -5.77 10.52 -15.06 -0.16 -5.93 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.65 3.59 -169.76 -0.61 -15.26 16 10 C 0.16 3.66 7.50 -2.98 -0.02 3.64 16 11 C -0.16 -2.88 7.86 -25.80 -0.20 -3.08 16 12 C 0.13 2.44 4.34 -66.74 -0.29 2.15 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.12 2.29 5.55 -4.04 -0.02 2.27 16 15 N -0.71 -12.00 5.43 -60.30 -0.33 -12.33 16 16 C 0.51 8.28 4.31 -10.99 -0.05 8.23 16 17 O -0.54 -10.42 16.75 5.56 0.09 -10.33 16 18 C -0.10 -1.27 1.91 -91.78 -0.17 -1.44 16 19 H 0.10 1.13 7.45 -51.93 -0.39 0.74 16 20 C -0.10 -1.12 5.07 -26.73 -0.14 -1.26 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 23 C -0.12 -0.93 4.95 -26.70 -0.13 -1.06 16 24 C -0.12 -1.23 1.77 -90.60 -0.16 -1.40 16 25 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 26 C 0.45 5.45 2.63 37.15 0.10 5.55 16 27 F -0.17 -2.54 15.03 2.25 0.03 -2.51 16 28 F -0.18 -2.16 16.58 2.25 0.04 -2.12 16 29 F -0.18 -2.24 16.28 2.25 0.04 -2.21 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 38 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 45 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -31.39 370.04 -8.15 -39.55 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.94 Total: 3.86 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.66 Total: 5.23 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.30 Total: -53.82 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.39 -8.15 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038368917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.350 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds