Wall clock time and date at job start Tue Mar 31 2020 18:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47193 * 120.00236 * 3 2 1 6 6 H 1.48504 * 109.47141 * 240.00197 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 196.68601 * 7 2 1 9 9 N 1.36936 * 119.99752 * 16.68411 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.74194 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21614 * 119.99328 * 359.97438 * 18 17 16 20 20 C 1.47376 * 120.00349 * 179.97438 * 18 17 16 21 21 C 1.47020 * 127.19103 * 0.02562 * 20 18 17 22 22 C 1.34176 * 105.95376 * 179.97438 * 21 20 18 23 23 O 1.34211 * 109.12455 * 0.02562 * 22 21 20 24 24 C 1.33656 * 110.91018 * 359.71872 * 23 22 21 25 25 C 1.50696 * 125.80300 * 180.28838 * 24 23 22 26 26 C 1.52997 * 117.50089 * 8.93531 * 25 24 23 27 27 C 1.52996 * 117.49878 * 300.27404 * 25 24 23 28 28 C 1.48174 * 118.51489 * 26.47228 * 9 7 2 29 29 H 0.97005 * 120.00586 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 31 31 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 32 32 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 33 33 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 34 34 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 35 35 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 36 36 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 37 37 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 38 38 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 39 39 H 1.08002 * 127.02381 * 359.97438 * 21 20 18 40 40 H 1.08002 * 125.44200 * 179.97438 * 22 21 20 41 41 H 1.09002 * 115.54996 * 154.60746 * 25 24 23 42 42 H 1.08998 * 117.49615 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49980 * 145.01997 * 26 25 24 44 44 H 1.09007 * 117.50126 * 214.97941 * 27 25 24 45 45 H 1.09001 * 117.50337 * 359.97438 * 27 25 24 46 46 H 1.09004 * 109.23394 * 259.08733 * 28 9 7 47 47 H 1.09003 * 109.23586 * 18.46063 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2124 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0562 -1.2219 0.2680 9 7 1.3688 -2.3629 -0.3415 10 6 1.8650 -3.6085 0.1964 11 6 2.9032 -4.2117 -0.7817 12 6 2.2209 -4.6796 -2.0051 13 8 1.5462 -3.6441 -2.7155 14 6 0.2279 -3.4304 -2.2783 15 1 -0.1537 -4.3423 -1.8189 16 6 -0.6508 -3.0598 -3.4747 17 7 -0.7267 -4.1967 -4.3956 18 6 -1.4508 -4.0995 -5.5281 19 8 -2.0416 -3.0680 -5.7853 20 6 -1.5267 -5.2429 -6.4547 21 6 -0.8810 -6.5549 -6.3020 22 6 -1.2328 -7.2672 -7.3833 23 8 -2.0218 -6.5159 -8.1671 24 6 -2.2152 -5.3072 -7.6306 25 6 -3.0493 -4.2019 -8.2253 26 6 -3.9056 -4.5421 -9.4467 27 6 -2.6502 -3.6812 -9.6074 28 6 0.1937 -2.2839 -1.2406 29 1 -0.4851 0.8400 -0.0004 30 1 2.3377 -3.4255 1.1613 31 1 1.0366 -4.3054 0.3235 32 1 3.6384 -3.4511 -1.0448 33 1 3.4068 -5.0518 -0.3034 34 1 2.9610 -5.1305 -2.6662 35 1 1.4923 -5.4414 -1.7280 36 1 -1.6522 -2.8074 -3.1258 37 1 -0.2191 -2.2023 -3.9909 38 1 -0.2558 -5.0195 -4.1901 39 1 -0.2521 -6.8792 -5.4861 40 1 -0.9288 -8.2826 -7.5905 41 1 -3.4521 -3.4817 -7.5131 42 1 -3.8660 -5.5654 -9.8199 43 1 -4.8716 -4.0454 -9.5383 44 1 -2.7907 -2.6184 -9.8048 45 1 -1.7840 -4.1376 -10.0865 46 1 -0.7179 -2.3586 -0.6476 47 1 0.2043 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073746306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:09 Heat of formation + Delta-G solvation = -32.691905 kcal Electronic energy + Delta-G solvation = -29120.931908 eV Core-core repulsion = 25078.486457 eV Total energy + Delta-G solvation = -4042.445450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59593 -40.82832 -39.98005 -38.06154 -36.88874 -35.99612 -34.29562 -33.80688 -32.81221 -30.74183 -30.30980 -27.47510 -27.06122 -25.12407 -23.95950 -23.68318 -23.30232 -22.39628 -21.67173 -21.48186 -20.64087 -18.98780 -18.77427 -17.77707 -17.37104 -17.16957 -17.12607 -16.75869 -16.44069 -16.13390 -15.97867 -15.78592 -15.49755 -15.20195 -14.68995 -14.51587 -14.26792 -14.00715 -13.89922 -13.78782 -13.49641 -13.32297 -13.09296 -13.02339 -12.72490 -12.48546 -12.47670 -12.31431 -12.01835 -11.94116 -11.81505 -11.52276 -11.43882 -11.37188 -11.06895 -10.83350 -10.56581 -10.27350 -10.17320 -9.43852 -8.67618 -7.86733 -5.31526 0.24990 1.12960 1.43144 1.47485 1.52933 1.73044 2.17844 2.26793 2.51353 2.88005 2.91054 3.26691 3.38405 3.57254 3.69785 3.76791 3.92532 3.99698 4.02486 4.12161 4.19394 4.24381 4.25804 4.44309 4.53216 4.57055 4.60646 4.68766 4.72205 4.79946 4.84134 4.86723 4.88530 5.01639 5.07322 5.13802 5.16139 5.21282 5.25433 5.34874 5.41687 5.51599 5.60555 5.69138 6.01720 6.39199 6.52473 6.56940 7.16403 7.18251 7.92733 8.30823 9.17903 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.002768 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.219643 B =10113.657980 C =11386.693944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.048 4.048 3 Si 0.959 3.041 4 H -0.294 1.294 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.262 4.262 8 H 0.061 0.939 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.170 4.170 12 C 0.067 3.933 13 O -0.378 6.378 14 C 0.079 3.921 15 H 0.075 0.925 16 C 0.138 3.862 17 N -0.700 5.700 18 C 0.581 3.419 19 O -0.582 6.582 20 C -0.262 4.262 21 C -0.197 4.197 22 C -0.024 4.024 23 O -0.177 6.177 24 C 0.099 3.901 25 C -0.118 4.118 26 C -0.148 4.148 27 C -0.156 4.156 28 C 0.174 3.826 29 H 0.249 0.751 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.412 0.588 39 H 0.181 0.819 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.013 0.987 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -19.701 -16.363 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.787 3.213 4 H -0.220 1.220 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.393 4.393 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.021 3.979 11 C -0.210 4.210 12 C -0.008 4.008 13 O -0.297 6.297 14 C 0.018 3.982 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.351 5.351 18 C 0.371 3.629 19 O -0.464 6.464 20 C -0.266 4.266 21 C -0.216 4.216 22 C -0.089 4.089 23 O -0.073 6.073 24 C 0.046 3.954 25 C -0.136 4.136 26 C -0.185 4.185 27 C -0.193 4.193 28 C 0.048 3.952 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.249 0.751 39 H 0.198 0.802 40 H 0.271 0.729 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.031 0.969 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.668 -18.864 -16.906 25.596 hybrid contribution 0.662 1.120 1.048 1.671 sum -3.006 -17.744 -15.858 23.987 Atomic orbital electron populations 1.70166 1.06371 1.25740 1.55574 1.25690 0.96024 1.01216 1.01371 0.85472 0.77742 0.79907 0.78139 1.21996 1.19892 1.21115 1.19390 0.92740 0.86582 1.40587 0.92119 1.43811 1.33602 1.02731 1.52315 1.20919 0.95192 0.86931 0.94901 1.22145 0.99722 1.01067 0.98065 1.21595 0.96846 0.88347 0.94056 1.87444 1.25652 1.58233 1.58348 1.22787 0.83294 0.99034 0.93047 0.90746 1.21229 0.99116 0.88903 0.89452 1.45532 1.50924 1.17471 1.21222 1.17623 0.78114 0.86421 0.80787 1.90732 1.47645 1.31988 1.76043 1.21111 1.09445 0.97155 0.98915 1.23165 1.04721 0.91362 1.02330 1.24746 0.95217 0.98602 0.90344 1.83731 1.55756 1.21714 1.46111 1.21801 0.96743 0.84970 0.91910 1.20760 1.03310 0.96563 0.92921 1.23176 0.96069 1.01999 0.97269 1.23150 0.99802 1.01440 0.94941 1.21423 0.88351 0.95993 0.89430 0.94221 0.94054 0.93629 0.93940 0.88419 0.88544 0.91815 0.90762 0.93230 0.75125 0.80185 0.72941 0.85396 0.87233 0.86198 0.86887 0.88102 0.96856 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 11.08 21.65 0.24 -55.76 16 2 C -0.05 -2.72 4.85 84.86 0.41 -2.31 16 3 Si 0.96 46.54 29.59 68.60 2.03 48.57 16 4 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.26 -14.68 9.42 84.03 0.79 -13.88 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.60 -30.03 2.58 -695.71 -1.79 -31.82 16 10 C 0.15 5.80 5.68 87.40 0.50 6.30 16 11 C -0.17 -5.36 6.03 29.57 0.18 -5.18 16 12 C 0.07 1.88 6.04 70.32 0.43 2.31 16 13 O -0.38 -13.74 9.78 -144.91 -1.42 -15.16 16 14 C 0.08 2.87 2.35 31.16 0.07 2.94 16 15 H 0.07 2.32 7.20 -2.38 -0.02 2.30 16 16 C 0.14 4.94 5.24 86.38 0.45 5.40 16 17 N -0.70 -20.69 5.49 -466.42 -2.56 -23.25 16 18 C 0.58 18.86 7.81 86.65 0.68 19.53 16 19 O -0.58 -23.06 14.92 -4.07 -0.06 -23.12 16 20 C -0.26 -6.78 6.31 -18.99 -0.12 -6.90 16 21 C -0.20 -3.37 10.60 23.65 0.25 -3.12 16 22 C -0.02 -0.32 12.03 66.89 0.80 0.48 16 23 O -0.18 -3.35 10.23 4.47 0.05 -3.31 16 24 C 0.10 2.39 6.85 25.26 0.17 2.56 16 25 C -0.12 -2.69 5.62 -11.54 -0.06 -2.75 16 26 C -0.15 -2.29 10.17 30.62 0.31 -1.98 16 27 C -0.16 -2.79 10.24 30.62 0.31 -2.47 16 28 C 0.17 8.42 4.54 86.63 0.39 8.82 16 29 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 30 H 0.04 1.67 7.97 -2.39 -0.02 1.65 16 31 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.06 1.44 7.27 -2.39 -0.02 1.42 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.41 9.59 7.64 -92.70 -0.71 8.88 16 39 H 0.18 2.07 7.74 -2.91 -0.02 2.04 16 40 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.13 3.55 6.66 -2.39 -0.02 3.54 16 42 H 0.11 1.49 7.97 -2.39 -0.02 1.47 16 43 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.70 8.02 -2.39 -0.02 0.68 16 47 H 0.04 2.26 6.31 -2.39 -0.02 2.24 16 Total: -1.00 -75.61 383.03 2.33 -73.29 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.28 Total: 20.85 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.57 Total: 9.73 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -4.11 Total: -110.83 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.43 Total: -41.59 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.61 2.33 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073746306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.597 kcal (2) G-P(sol) polarization free energy of solvation -75.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds