Wall clock time and date at job start Tue Mar 31 2020 17:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48500 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46980 * 300.00601 * 3 2 1 6 6 H 1.48505 * 109.47065 * 60.00318 * 3 2 1 7 7 C 1.37876 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46943 * 179.97438 * 9 7 2 11 11 O 1.21281 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00051 * 180.02562 * 10 9 7 13 13 C 1.47050 * 125.70895 * 180.02562 * 12 10 9 14 14 C 1.54066 * 107.56085 * 177.85275 * 13 12 10 15 15 H 1.09002 * 113.81432 * 103.06079 * 14 13 12 16 16 C 1.54907 * 108.62383 * 232.12752 * 14 13 12 17 17 C 1.54210 * 102.82981 * 75.68599 * 16 14 13 18 18 H 1.08992 * 109.82238 * 261.78929 * 17 16 14 19 19 C 1.52999 * 109.81902 * 140.84823 * 17 16 14 20 20 C 1.50702 * 109.47085 * 175.34616 * 19 17 16 21 21 O 1.21290 * 119.99840 * 0.02562 * 20 19 17 22 22 N 1.34778 * 120.00369 * 180.02562 * 20 19 17 23 23 C 1.46981 * 127.25069 * 359.68279 * 22 20 19 24 24 C 1.50584 * 107.13452 * 179.91303 * 23 22 20 25 25 C 1.30387 * 110.11902 * 0.37067 * 24 23 22 26 26 C 1.46978 * 127.25335 * 180.02562 * 22 20 19 27 27 O 1.43040 * 107.65117 * 21.31745 * 17 16 14 28 28 C 1.43160 * 110.62945 * 0.02913 * 27 17 16 29 29 H 1.08992 * 113.58874 * 103.20316 * 28 27 17 30 30 C 1.47379 * 125.70567 * 359.97195 * 12 10 9 31 31 H 0.96999 * 120.00085 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47156 * 60.00336 * 9 7 2 33 33 H 1.08990 * 109.47094 * 299.99652 * 9 7 2 34 34 H 1.09001 * 109.83794 * 58.34802 * 13 12 10 35 35 H 1.08997 * 109.83647 * 297.35976 * 13 12 10 36 36 H 1.09001 * 110.74032 * 194.01817 * 16 14 13 37 37 H 1.08997 * 110.73948 * 317.35220 * 16 14 13 38 38 H 1.08990 * 109.47629 * 295.34688 * 19 17 16 39 39 H 1.09003 * 109.47096 * 55.35419 * 19 17 16 40 40 H 1.08997 * 109.90407 * 299.41443 * 23 22 20 41 41 H 1.09007 * 109.90635 * 60.65994 * 23 22 20 42 42 H 1.07999 * 124.94301 * 180.14661 * 24 23 22 43 43 H 1.08000 * 124.94451 * 179.74874 * 25 24 23 44 44 H 1.08997 * 109.90658 * 299.33480 * 26 22 20 45 45 H 1.08996 * 109.90809 * 60.40460 * 26 22 20 46 46 H 1.09000 * 110.32269 * 323.86744 * 30 12 10 47 47 H 1.08994 * 110.31921 * 86.07228 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 8 3.4227 -3.4230 -0.0031 12 7 1.7811 -4.9153 -0.0025 13 6 2.6207 -6.1225 -0.0033 14 6 1.6812 -7.3423 0.0511 15 1 1.5613 -7.8485 -0.9068 16 6 2.1288 -8.2600 1.2160 17 6 1.6199 -7.5058 2.4611 18 1 2.4331 -6.9292 2.9019 19 6 1.0748 -8.5034 3.4850 20 6 0.6856 -7.7701 4.7428 21 8 0.8296 -6.5678 4.8130 22 7 0.1775 -8.4502 5.7896 23 6 -0.0697 -9.8965 5.8755 24 6 -0.6398 -10.1688 7.2424 25 6 -0.7444 -9.0563 7.9144 26 6 -0.2526 -7.9008 7.0832 27 8 0.5751 -6.6253 2.0379 28 6 0.3587 -6.7406 0.6274 29 1 -0.5272 -7.3201 0.3680 30 6 0.3660 -5.3273 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8896 34 1 3.2737 -6.1194 0.8695 35 1 3.2188 -6.1565 -0.9139 36 1 1.6572 -9.2397 1.1386 37 1 3.2145 -8.3536 1.2383 38 1 0.2004 -9.0064 3.0724 39 1 1.8425 -9.2414 3.7177 40 1 -0.7822 -10.1974 5.1075 41 1 0.8664 -10.4410 5.7506 42 1 -0.9243 -11.1432 7.6110 43 1 -1.1285 -8.9752 8.9205 44 1 0.5891 -7.4184 7.5799 45 1 -1.0564 -7.1804 6.9317 46 1 -0.2277 -4.6411 0.6022 47 1 -0.0178 -5.3650 -1.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:17 Heat of formation + Delta-G solvation = -73.195491 kcal Electronic energy + Delta-G solvation = -29082.303719 eV Core-core repulsion = 25038.101901 eV Total energy + Delta-G solvation = -4044.201818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91973 -40.22985 -38.30777 -37.73568 -35.27757 -33.03626 -32.81982 -32.35264 -31.24947 -29.23379 -28.87194 -28.44310 -26.50932 -24.63437 -23.61321 -22.58100 -21.11704 -20.67966 -20.02241 -19.49758 -18.69010 -17.48172 -17.06242 -16.51178 -16.37971 -15.79888 -15.58977 -15.43045 -14.94633 -14.84486 -14.56148 -14.14496 -14.00900 -13.81721 -13.26987 -13.25510 -12.99459 -12.88075 -12.77628 -12.69314 -12.45647 -12.18853 -11.98288 -11.82487 -11.74108 -11.51649 -11.31365 -11.03270 -10.96118 -10.69183 -10.63994 -10.51013 -10.09051 -9.96898 -9.86434 -9.56872 -9.12860 -8.70697 -8.54868 -8.34603 -7.96242 -5.96170 -3.95070 1.61624 2.52521 2.60581 3.40275 3.46537 3.54145 3.58194 3.73016 3.79794 4.05526 4.15627 4.22973 4.42604 4.48518 4.56871 4.62222 4.80604 4.88765 4.91319 5.03502 5.07127 5.13352 5.16073 5.20883 5.27183 5.32396 5.37208 5.41783 5.46446 5.54211 5.66933 5.79885 5.84352 5.86888 5.90494 6.01677 6.05810 6.14800 6.25270 6.29749 6.97855 7.16724 7.26044 7.32582 7.46395 8.03881 8.06067 8.14697 8.50002 9.15513 9.31816 9.69224 11.16436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.002692 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.945919 B =10399.624194 C =11748.380985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.534 3.466 11 O -0.546 6.546 12 N -0.627 5.627 13 C 0.114 3.886 14 C -0.132 4.132 15 H 0.112 0.888 16 C -0.141 4.141 17 C 0.098 3.902 18 H 0.087 0.913 19 C -0.142 4.142 20 C 0.535 3.465 21 O -0.508 6.508 22 N -0.630 5.630 23 C 0.124 3.876 24 C -0.176 4.176 25 C -0.160 4.160 26 C 0.125 3.875 27 O -0.343 6.343 28 C 0.064 3.936 29 H 0.101 0.899 30 C 0.102 3.898 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -29.403 9.882 31.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.326 3.674 11 O -0.422 6.422 12 N -0.365 5.365 13 C -0.009 4.009 14 C -0.151 4.151 15 H 0.130 0.870 16 C -0.179 4.179 17 C 0.039 3.961 18 H 0.105 0.895 19 C -0.182 4.182 20 C 0.324 3.676 21 O -0.381 6.381 22 N -0.367 5.367 23 C 0.001 3.999 24 C -0.194 4.194 25 C -0.178 4.178 26 C 0.002 3.998 27 O -0.262 6.262 28 C 0.006 3.994 29 H 0.118 0.882 30 C -0.022 4.022 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.256 -28.142 9.942 30.024 hybrid contribution 0.269 0.455 0.066 0.533 sum -2.988 -27.687 10.007 29.591 Atomic orbital electron populations 1.69975 1.06011 1.26677 1.51400 1.25005 0.94910 0.99422 0.95322 0.86385 0.80345 0.83066 0.77395 1.19502 1.21059 1.21010 1.21227 0.94275 0.89159 1.49746 0.90705 1.19217 0.94046 0.90139 0.99359 1.21801 0.90838 0.81777 0.72936 1.90532 1.18100 1.83727 1.49829 1.48715 1.06204 1.05211 1.76348 1.21756 0.93575 0.83971 1.01638 1.23796 0.95891 0.96032 0.99363 0.87001 1.23109 1.02587 0.98930 0.93296 1.22423 0.90547 0.89901 0.93209 0.89524 1.22107 1.03338 0.99283 0.93522 1.20206 0.76940 0.87454 0.83048 1.90842 1.52300 1.13868 1.81045 1.48306 1.65027 1.08418 1.14994 1.20801 1.00437 0.81962 0.96693 1.23249 1.01340 0.99476 0.95312 1.23357 1.00014 0.94421 1.00041 1.20718 1.00000 0.95887 0.83152 1.88480 1.54632 1.61944 1.21159 1.24060 0.96901 0.96386 0.82055 0.88152 1.22354 0.84521 0.95123 1.00183 0.93035 0.93611 0.93300 0.91859 0.92069 0.90091 0.89433 0.88360 0.88037 0.90430 0.90501 0.83682 0.83656 0.90387 0.90249 0.89118 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 23.16 29.54 -169.99 -5.02 18.14 16 4 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.51 -15.58 8.92 -34.44 -0.31 -15.89 16 8 H 0.07 2.40 6.75 -52.48 -0.35 2.05 16 9 C 0.01 0.32 4.46 -29.03 -0.13 0.19 16 10 C 0.53 13.52 7.84 -10.98 -0.09 13.43 16 11 O -0.55 -15.52 15.79 5.56 0.09 -15.43 16 12 N -0.63 -12.37 3.32 -170.83 -0.57 -12.94 16 13 C 0.11 1.78 6.08 -3.19 -0.02 1.76 16 14 C -0.13 -1.41 4.34 -87.28 -0.38 -1.79 16 15 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 16 C -0.14 -1.21 5.76 -25.09 -0.14 -1.36 16 17 C 0.10 1.17 2.46 -26.10 -0.06 1.11 16 18 H 0.09 1.27 7.84 -51.93 -0.41 0.87 16 19 C -0.14 -1.29 4.57 -27.88 -0.13 -1.42 16 20 C 0.53 6.87 7.79 -10.98 -0.09 6.79 16 21 O -0.51 -9.32 15.90 -6.94 -0.11 -9.43 16 22 N -0.63 -6.34 3.37 -175.78 -0.59 -6.93 16 23 C 0.12 0.75 6.65 -4.99 -0.03 0.71 16 24 C -0.18 -0.89 10.87 -35.91 -0.39 -1.28 16 25 C -0.16 -0.97 10.87 -35.90 -0.39 -1.36 16 26 C 0.12 1.17 7.00 -4.98 -0.03 1.13 16 27 O -0.34 -5.30 9.82 -47.72 -0.47 -5.77 16 28 C 0.06 0.81 4.68 -24.06 -0.11 0.69 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 C 0.10 1.63 6.33 -2.67 -0.02 1.61 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 1.40 7.84 -51.93 -0.41 0.99 16 34 H 0.06 1.06 7.18 -51.93 -0.37 0.69 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.47 7.84 -51.93 -0.41 0.07 16 37 H 0.09 0.68 7.98 -51.93 -0.41 0.27 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.64 7.45 -51.93 -0.39 1.25 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -40.18 383.27 -9.96 -50.14 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.38 Total: -2.52 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.42 Total: 5.86 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.42 Total: -46.75 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.49 Total: -30.63 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.18 -9.96 -50.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.059 kcal (2) G-P(sol) polarization free energy of solvation -40.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds