Wall clock time and date at job start Tue Mar 31 2020 17:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48500 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46980 * 300.00601 * 3 2 1 6 6 H 1.48505 * 109.47065 * 60.00318 * 3 2 1 7 7 C 1.37876 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46943 * 179.97438 * 9 7 2 11 11 O 1.21281 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00051 * 180.02562 * 10 9 7 13 13 C 1.47050 * 125.70895 * 180.02562 * 12 10 9 14 14 C 1.54066 * 107.56085 * 177.85275 * 13 12 10 15 15 H 1.09002 * 113.81432 * 103.06079 * 14 13 12 16 16 C 1.54907 * 108.62383 * 232.12752 * 14 13 12 17 17 C 1.54210 * 102.82981 * 75.68599 * 16 14 13 18 18 H 1.08992 * 109.82238 * 261.78929 * 17 16 14 19 19 C 1.52999 * 109.81902 * 140.84823 * 17 16 14 20 20 C 1.50702 * 109.47085 * 175.34616 * 19 17 16 21 21 O 1.21290 * 119.99840 * 0.02562 * 20 19 17 22 22 N 1.34778 * 120.00369 * 180.02562 * 20 19 17 23 23 C 1.46981 * 127.25069 * 359.68279 * 22 20 19 24 24 C 1.50584 * 107.13452 * 179.91303 * 23 22 20 25 25 C 1.30387 * 110.11902 * 0.37067 * 24 23 22 26 26 C 1.46978 * 127.25335 * 180.02562 * 22 20 19 27 27 O 1.43040 * 107.65117 * 21.31745 * 17 16 14 28 28 C 1.43160 * 110.62945 * 0.02913 * 27 17 16 29 29 H 1.08992 * 113.58874 * 103.20316 * 28 27 17 30 30 C 1.47379 * 125.70567 * 359.97195 * 12 10 9 31 31 H 0.96999 * 120.00085 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47156 * 60.00336 * 9 7 2 33 33 H 1.08990 * 109.47094 * 299.99652 * 9 7 2 34 34 H 1.09001 * 109.83794 * 58.34802 * 13 12 10 35 35 H 1.08997 * 109.83647 * 297.35976 * 13 12 10 36 36 H 1.09001 * 110.74032 * 194.01817 * 16 14 13 37 37 H 1.08997 * 110.73948 * 317.35220 * 16 14 13 38 38 H 1.08990 * 109.47629 * 295.34688 * 19 17 16 39 39 H 1.09003 * 109.47096 * 55.35419 * 19 17 16 40 40 H 1.08997 * 109.90407 * 299.41443 * 23 22 20 41 41 H 1.09007 * 109.90635 * 60.65994 * 23 22 20 42 42 H 1.07999 * 124.94301 * 180.14661 * 24 23 22 43 43 H 1.08000 * 124.94451 * 179.74874 * 25 24 23 44 44 H 1.08997 * 109.90658 * 299.33480 * 26 22 20 45 45 H 1.08996 * 109.90809 * 60.40460 * 26 22 20 46 46 H 1.09000 * 110.32269 * 323.86744 * 30 12 10 47 47 H 1.08994 * 110.31921 * 86.07228 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 8 3.4227 -3.4230 -0.0031 12 7 1.7811 -4.9153 -0.0025 13 6 2.6207 -6.1225 -0.0033 14 6 1.6812 -7.3423 0.0511 15 1 1.5613 -7.8485 -0.9068 16 6 2.1288 -8.2600 1.2160 17 6 1.6199 -7.5058 2.4611 18 1 2.4331 -6.9292 2.9019 19 6 1.0748 -8.5034 3.4850 20 6 0.6856 -7.7701 4.7428 21 8 0.8296 -6.5678 4.8130 22 7 0.1775 -8.4502 5.7896 23 6 -0.0697 -9.8965 5.8755 24 6 -0.6398 -10.1688 7.2424 25 6 -0.7444 -9.0563 7.9144 26 6 -0.2526 -7.9008 7.0832 27 8 0.5751 -6.6253 2.0379 28 6 0.3587 -6.7406 0.6274 29 1 -0.5272 -7.3201 0.3680 30 6 0.3660 -5.3273 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8896 34 1 3.2737 -6.1194 0.8695 35 1 3.2188 -6.1565 -0.9139 36 1 1.6572 -9.2397 1.1386 37 1 3.2145 -8.3536 1.2383 38 1 0.2004 -9.0064 3.0724 39 1 1.8425 -9.2414 3.7177 40 1 -0.7822 -10.1974 5.1075 41 1 0.8664 -10.4410 5.7506 42 1 -0.9243 -11.1432 7.6110 43 1 -1.1285 -8.9752 8.9205 44 1 0.5891 -7.4184 7.5799 45 1 -1.0564 -7.1804 6.9317 46 1 -0.2277 -4.6411 0.6022 47 1 -0.0178 -5.3650 -1.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:16 Heat of formation + Delta-G solvation = -102.674792 kcal Electronic energy + Delta-G solvation = -29083.582037 eV Core-core repulsion = 25038.101901 eV Total energy + Delta-G solvation = -4045.480136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96809 -41.12260 -39.91284 -38.75657 -36.73490 -35.18429 -33.91925 -33.24370 -32.36123 -30.94887 -30.01899 -29.42057 -27.72712 -25.94783 -24.95047 -24.04738 -22.00991 -21.68447 -20.62605 -20.39839 -20.20437 -18.64622 -18.30149 -18.16515 -17.48181 -17.28327 -16.89411 -16.61087 -16.41246 -16.25525 -15.77974 -15.39463 -15.07275 -14.90675 -14.52704 -14.32157 -14.18653 -13.98048 -13.85201 -13.77930 -13.51444 -13.37367 -13.29660 -13.24289 -12.84850 -12.75373 -12.64775 -12.38974 -12.31652 -12.12355 -12.08071 -11.91319 -11.63892 -11.44602 -10.98905 -10.77584 -10.68573 -10.68129 -10.42038 -9.58699 -9.39866 -8.30573 -6.39459 1.20165 1.34167 1.35867 1.51200 1.61036 1.77307 1.87513 2.10986 2.40143 2.70064 3.03440 3.30277 3.42493 3.50783 3.67612 3.71598 3.86549 3.93547 4.07067 4.18485 4.23572 4.30464 4.39440 4.43558 4.46805 4.52548 4.56839 4.61886 4.65992 4.68583 4.71624 4.77033 4.88931 4.93509 4.96368 4.99564 5.08348 5.17068 5.17707 5.23121 5.40927 5.47291 5.68768 5.80736 5.99508 6.26047 6.48344 6.52911 6.74274 7.14563 7.26393 7.37714 8.82386 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.002692 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.945919 B =10399.624194 C =11748.380985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.528 3.472 11 O -0.590 6.590 12 N -0.624 5.624 13 C 0.102 3.898 14 C -0.111 4.111 15 H 0.157 0.843 16 C -0.125 4.125 17 C 0.087 3.913 18 H 0.038 0.962 19 C -0.127 4.127 20 C 0.522 3.478 21 O -0.585 6.585 22 N -0.631 5.631 23 C 0.112 3.888 24 C -0.154 4.154 25 C -0.178 4.178 26 C 0.114 3.886 27 O -0.386 6.386 28 C 0.070 3.930 29 H 0.149 0.851 30 C 0.087 3.913 31 H 0.269 0.731 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.181 0.819 43 H 0.165 0.835 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -33.977 9.104 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.018 4.018 10 C 0.319 3.681 11 O -0.470 6.470 12 N -0.358 5.358 13 C -0.020 4.020 14 C -0.129 4.129 15 H 0.175 0.825 16 C -0.162 4.162 17 C 0.029 3.971 18 H 0.056 0.944 19 C -0.167 4.167 20 C 0.313 3.687 21 O -0.464 6.464 22 N -0.367 5.367 23 C -0.009 4.009 24 C -0.172 4.172 25 C -0.196 4.196 26 C -0.009 4.009 27 O -0.306 6.306 28 C 0.012 3.988 29 H 0.166 0.834 30 C -0.036 4.036 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.198 0.802 43 H 0.182 0.818 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.173 -32.834 9.181 34.348 hybrid contribution 0.469 1.836 0.370 1.931 sum -3.703 -30.998 9.551 32.647 Atomic orbital electron populations 1.70055 1.07258 1.28192 1.50895 1.25891 0.95975 1.03029 0.94185 0.85321 0.78448 0.78292 0.78506 1.19988 1.18956 1.19654 1.21394 0.93603 0.91266 1.51636 0.92834 1.18953 0.94000 0.90956 0.97914 1.21237 0.89634 0.83575 0.73616 1.90483 1.19200 1.84970 1.52372 1.48581 1.08962 1.04732 1.73514 1.22134 0.94465 0.84428 1.00953 1.23893 0.92828 0.93952 1.02237 0.82528 1.23131 1.03570 0.99896 0.89615 1.22529 0.89012 0.90019 0.95571 0.94380 1.22125 1.05600 0.98480 0.90448 1.21076 0.76116 0.86921 0.84606 1.90809 1.55706 1.17294 1.82611 1.48457 1.63368 1.10561 1.14292 1.21217 1.02456 0.79200 0.98057 1.23618 0.99002 1.00328 0.94230 1.23339 1.02042 0.93270 1.00906 1.20791 0.98760 0.97407 0.83927 1.88469 1.55531 1.63813 1.22761 1.24315 0.99700 0.93894 0.80843 0.83393 1.22760 0.81736 0.97282 1.01814 0.92229 0.94093 0.95588 0.93870 0.91591 0.85003 0.88519 0.85052 0.84068 0.88177 0.87918 0.80215 0.81753 0.92347 0.92631 0.92477 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 48.64 29.54 68.60 2.03 50.67 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.54 -35.25 8.92 25.60 0.23 -35.02 16 8 H 0.05 3.66 6.75 -2.91 -0.02 3.64 16 9 C 0.02 1.25 4.46 29.10 0.13 1.38 16 10 C 0.53 28.63 7.84 87.66 0.69 29.31 16 11 O -0.59 -35.86 15.79 -3.03 -0.05 -35.91 16 12 N -0.62 -25.66 3.32 -812.77 -2.70 -28.35 16 13 C 0.10 3.19 6.08 86.64 0.53 3.72 16 14 C -0.11 -1.94 4.34 -8.63 -0.04 -1.98 16 15 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 16 C -0.12 -1.58 5.76 31.66 0.18 -1.40 16 17 C 0.09 1.99 2.46 31.00 0.08 2.07 16 18 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 19 C -0.13 -1.94 4.57 29.85 0.14 -1.81 16 20 C 0.52 13.65 7.79 87.66 0.68 14.33 16 21 O -0.59 -23.59 15.90 8.88 0.14 -23.45 16 22 N -0.63 -12.40 3.37 -828.42 -2.79 -15.19 16 23 C 0.11 0.94 6.65 85.51 0.57 1.51 16 24 C -0.15 -1.02 10.87 26.24 0.29 -0.73 16 25 C -0.18 -1.93 10.87 26.25 0.29 -1.65 16 26 C 0.11 2.29 7.00 85.51 0.60 2.89 16 27 O -0.39 -11.94 9.82 -137.04 -1.35 -13.28 16 28 C 0.07 1.58 4.68 32.32 0.15 1.74 16 29 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 30 C 0.09 2.80 6.33 86.79 0.55 3.35 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.04 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.03 1.63 7.84 -2.39 -0.02 1.61 16 34 H 0.04 1.51 7.18 -2.39 -0.02 1.50 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.13 0.49 7.84 -2.39 -0.02 0.47 16 37 H 0.10 1.13 7.98 -2.39 -0.02 1.11 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 43 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 2.22 7.45 -2.39 -0.02 2.20 16 47 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -100.13 383.27 2.04 -98.09 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.96 Total: 6.63 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.51 Total: 18.64 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -5.20 Total: -101.38 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -1.25 Total: -72.64 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -100.13 2.04 -98.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.587 kcal (2) G-P(sol) polarization free energy of solvation -100.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds