Wall clock time and date at job start Tue Mar 31 2020 17:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47408 * 239.99963 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47388 * 119.99726 * 3 2 1 7 7 C 1.37880 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20884 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98615 * 139.65867 * 10 9 7 12 12 C 1.34773 * 136.05494 * 152.84589 * 11 10 9 13 13 O 1.21278 * 120.00110 * 4.99205 * 12 11 10 14 14 C 1.50700 * 119.99547 * 184.99435 * 12 11 10 15 15 C 1.56392 * 119.48799 * 192.25477 * 14 12 11 16 16 C 1.52940 * 59.59360 * 110.61999 * 15 14 12 17 17 H 1.09003 * 119.50226 * 247.47837 * 16 15 14 18 18 C 1.54576 * 118.20071 * 92.35274 * 16 15 14 19 19 C 1.54940 * 102.86272 * 272.66310 * 18 16 15 20 20 N 1.47531 * 117.37308 * 36.43660 * 14 12 11 21 21 C 1.34772 * 127.04060 * 64.93607 * 20 14 12 22 22 O 1.21277 * 120.00337 * 354.57059 * 21 20 14 23 23 C 1.50704 * 119.99477 * 174.56864 * 21 20 14 24 24 H 1.09002 * 110.27721 * 54.36493 * 23 21 20 25 25 C 1.55503 * 110.36883 * 292.25205 * 23 21 20 26 26 C 1.55306 * 100.69484 * 204.61099 * 25 23 21 27 27 C 1.54388 * 102.43789 * 34.12713 * 26 25 23 28 28 O 1.43238 * 107.58790 * 338.54242 * 27 26 25 29 29 C 1.47071 * 87.88250 * 333.10342 * 11 10 9 30 30 H 0.97004 * 120.00571 * 359.97438 * 1 2 3 31 31 H 1.09006 * 113.41296 * 46.80521 * 9 7 2 32 32 H 1.08995 * 113.46550 * 24.87554 * 10 9 7 33 33 H 1.09000 * 113.46790 * 254.44393 * 10 9 7 34 34 H 1.08993 * 117.10171 * 3.14746 * 15 14 12 35 35 H 1.09006 * 118.28672 * 217.54960 * 15 14 12 36 36 H 1.09000 * 110.73188 * 154.31543 * 18 16 15 37 37 H 1.09000 * 110.88864 * 31.07870 * 18 16 15 38 38 H 1.08999 * 110.65880 * 278.99320 * 19 18 16 39 39 H 1.08993 * 110.65934 * 155.87229 * 19 18 16 40 40 H 1.08995 * 111.32883 * 86.73871 * 25 23 21 41 41 H 1.08997 * 111.14401 * 322.40642 * 25 23 21 42 42 H 1.08994 * 110.84943 * 275.83774 * 26 25 23 43 43 H 1.09000 * 110.84799 * 152.42185 * 26 25 23 44 44 H 1.08997 * 109.82740 * 98.05258 * 27 26 25 45 45 H 1.08993 * 109.82938 * 219.02514 * 27 26 25 46 46 H 1.08999 * 113.46147 * 141.68048 * 29 11 10 47 47 H 1.09005 * 113.46639 * 272.11791 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3575 0.9509 12 6 0.8345 -5.6114 1.2723 13 8 1.3921 -6.5605 0.7632 14 6 -0.2780 -5.8340 2.2641 15 6 -0.5146 -7.2657 2.8471 16 6 0.0248 -6.1463 3.7387 17 1 1.0451 -6.2063 4.1175 18 6 -0.9888 -5.3003 4.5427 19 6 -1.3732 -4.1807 3.5431 20 7 -1.4075 -4.8852 2.2406 21 6 -2.2928 -4.7014 1.2412 22 8 -2.1474 -5.2841 0.1875 23 6 -3.4633 -3.7718 1.4330 24 1 -3.1165 -2.7876 1.7478 25 6 -4.4523 -4.3560 2.4813 26 6 -5.7718 -3.6579 2.0529 27 6 -5.6186 -3.5695 0.5192 28 8 -4.2218 -3.6678 0.2175 29 6 0.8561 -3.0001 1.3927 30 1 -0.4851 0.8400 0.0004 31 1 0.4412 -2.5317 -0.7295 32 1 3.1384 -3.5658 0.4200 33 1 2.1852 -4.2532 -0.9637 34 1 0.1825 -8.0468 2.5439 35 1 -1.5411 -7.5918 3.0154 36 1 -0.5203 -4.8794 5.4323 37 1 -1.8626 -5.8935 4.8125 38 1 -0.6172 -3.3955 3.5357 39 1 -2.3536 -3.7699 3.7841 40 1 -4.1688 -4.0723 3.4948 41 1 -4.5318 -5.4388 2.3861 42 1 -5.8454 -2.6637 2.4933 43 1 -6.6366 -4.2645 2.3220 44 1 -6.1577 -4.3900 0.0459 45 1 -6.0076 -2.6157 0.1631 46 1 -0.2047 -2.8777 1.6118 47 1 1.4979 -2.6214 2.1883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271406758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:05 Heat of formation + Delta-G solvation = -24.710120 kcal Electronic energy + Delta-G solvation = -30911.105805 eV Core-core repulsion = 26869.006471 eV Total energy + Delta-G solvation = -4042.099334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92579 -39.63531 -38.65037 -37.52360 -36.79036 -33.36209 -32.66414 -32.10342 -30.51954 -29.72875 -29.05664 -25.62508 -25.01709 -24.40587 -23.49399 -22.65793 -21.84571 -21.10942 -20.23013 -19.50217 -18.11192 -17.36173 -16.73745 -16.55162 -16.39103 -16.02373 -15.27606 -15.25848 -14.75194 -14.68418 -14.42612 -14.30220 -13.94983 -13.67482 -13.38284 -13.26648 -12.88759 -12.52095 -12.43548 -12.32718 -12.15285 -11.98891 -11.69628 -11.54349 -11.51604 -11.29834 -11.15425 -11.09445 -10.96509 -10.85575 -10.67868 -10.41119 -10.23006 -9.90083 -9.57146 -9.27443 -9.19563 -9.09351 -8.58714 -8.43168 -7.81922 -6.15660 -4.21829 2.47574 2.74304 2.96289 3.25125 3.30586 3.32644 3.42911 3.77139 3.85465 4.19933 4.33142 4.33891 4.42117 4.54657 4.64406 4.80452 4.93635 4.98879 5.00552 5.02612 5.07031 5.13693 5.18501 5.34156 5.47716 5.49356 5.55216 5.62339 5.65926 5.69385 5.72711 5.81732 5.87751 6.04519 6.07405 6.19514 6.24939 6.30061 6.48703 6.54309 6.69266 6.84239 6.91690 7.57432 7.59883 7.82184 8.20757 8.33939 8.53791 8.79782 8.82052 9.44398 10.93600 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005147 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.834440 B = 5438.746666 C = 7215.288988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.100 3.900 11 N -0.630 5.630 12 C 0.576 3.424 13 O -0.558 6.558 14 C 0.063 3.937 15 C -0.116 4.116 16 C -0.137 4.137 17 H 0.125 0.875 18 C -0.105 4.105 19 C 0.092 3.908 20 N -0.584 5.584 21 C 0.537 3.463 22 O -0.501 6.501 23 C 0.073 3.927 24 H 0.102 0.898 25 C -0.144 4.144 26 C -0.153 4.153 27 C 0.048 3.952 28 O -0.348 6.348 29 C 0.102 3.898 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.429 -6.666 13.682 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.022 4.022 11 N -0.362 5.362 12 C 0.364 3.636 13 O -0.437 6.437 14 C -0.026 4.026 15 C -0.155 4.155 16 C -0.156 4.156 17 H 0.143 0.857 18 C -0.143 4.143 19 C -0.030 4.030 20 N -0.322 5.322 21 C 0.324 3.676 22 O -0.373 6.373 23 C 0.012 3.988 24 H 0.120 0.880 25 C -0.182 4.182 26 C -0.191 4.191 27 C -0.029 4.029 28 O -0.266 6.266 29 C -0.021 4.021 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.304 -7.501 12.537 17.878 hybrid contribution 0.315 1.088 0.282 1.167 sum -9.989 -6.413 12.819 17.471 Atomic orbital electron populations 1.69958 1.06000 1.27097 1.48889 1.25017 0.94846 0.99261 0.94279 0.86617 0.79603 0.82740 0.78813 1.20045 1.21239 1.20132 1.20851 0.92911 0.89511 1.52250 0.91924 1.20284 0.94721 0.91056 0.92256 1.23377 0.94259 0.93165 0.91351 1.49740 1.41942 1.04596 1.39956 1.18606 0.82300 0.81529 0.81213 1.90632 1.57537 1.41044 1.54501 1.21959 0.89015 0.94631 0.97042 1.23873 1.02899 0.90504 0.98195 1.23699 1.01475 1.00833 0.89622 0.85737 1.22420 0.98417 0.95859 0.97617 1.22979 1.02970 0.95630 0.81394 1.48093 1.27989 1.38910 1.17182 1.20109 0.82388 0.82458 0.82632 1.90763 1.73930 1.47767 1.24839 1.22854 0.91298 0.98600 0.86083 0.88037 1.23372 0.94179 1.01537 0.99110 1.23124 0.98062 1.01882 0.96036 1.23205 0.83007 1.01875 0.94778 1.88600 1.16474 1.94627 1.26927 1.23558 0.99481 0.76961 1.02060 0.92647 0.91462 0.90833 0.92466 0.86551 0.88004 0.89093 0.90247 0.89568 0.89478 0.88968 0.89916 0.89973 0.89727 0.91200 0.90846 0.92375 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.12 13.26 55.43 0.74 -23.39 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.39 8.83 -34.44 -0.30 -13.69 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.04 0.89 3.77 -91.39 -0.34 0.55 16 10 C 0.10 2.26 8.19 -8.51 -0.07 2.19 16 11 N -0.63 -13.90 3.68 -185.38 -0.68 -14.58 16 12 C 0.58 12.51 7.86 -10.99 -0.09 12.42 16 13 O -0.56 -13.63 17.38 5.56 0.10 -13.53 16 14 C 0.06 1.06 2.43 -130.20 -0.32 0.74 16 15 C -0.12 -1.55 10.02 -24.94 -0.25 -1.80 16 16 C -0.14 -1.62 6.79 -89.44 -0.61 -2.23 16 17 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 18 C -0.11 -0.91 6.85 -24.88 -0.17 -1.08 16 19 C 0.09 1.02 6.35 -2.13 -0.01 1.01 16 20 N -0.58 -9.13 1.92 -154.49 -0.30 -9.43 16 21 C 0.54 9.91 7.01 -10.99 -0.08 9.83 16 22 O -0.50 -11.91 16.90 -13.76 -0.23 -12.14 16 23 C 0.07 1.09 3.05 -26.55 -0.08 1.00 16 24 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 25 C -0.14 -1.41 6.11 -24.18 -0.15 -1.56 16 26 C -0.15 -1.29 7.00 -24.78 -0.17 -1.47 16 27 C 0.05 0.56 7.80 37.88 0.30 0.85 16 28 O -0.35 -6.02 10.61 -54.55 -0.58 -6.60 16 29 C 0.10 2.21 6.95 -8.64 -0.06 2.15 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.07 1.90 8.11 -51.93 -0.42 1.48 16 32 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.12 1.61 7.94 -51.93 -0.41 1.20 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.06 6.63 -51.93 -0.34 0.71 16 39 H 0.09 0.73 5.43 -51.93 -0.28 0.45 16 40 H 0.09 0.65 6.52 -51.93 -0.34 0.31 16 41 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.25 5.59 -51.93 -0.29 0.96 16 47 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -35.45 381.07 -9.86 -45.31 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.12 Total: 2.90 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -2.50 Total: 10.64 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.24 Total: -47.40 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.71 Total: -32.27 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.45 -9.86 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271406758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds