Wall clock time and date at job start Tue Mar 31 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47408 * 239.99963 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47388 * 119.99726 * 3 2 1 7 7 C 1.37880 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.20884 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98615 * 139.65867 * 10 9 7 12 12 C 1.34773 * 136.05494 * 152.84589 * 11 10 9 13 13 O 1.21278 * 120.00110 * 4.99205 * 12 11 10 14 14 C 1.50700 * 119.99547 * 184.99435 * 12 11 10 15 15 C 1.56392 * 119.48799 * 192.25477 * 14 12 11 16 16 C 1.52940 * 59.59360 * 110.61999 * 15 14 12 17 17 H 1.09003 * 119.50226 * 247.47837 * 16 15 14 18 18 C 1.54576 * 118.20071 * 92.35274 * 16 15 14 19 19 C 1.54940 * 102.86272 * 272.66310 * 18 16 15 20 20 N 1.47531 * 117.37308 * 36.43660 * 14 12 11 21 21 C 1.34772 * 127.04060 * 64.93607 * 20 14 12 22 22 O 1.21277 * 120.00337 * 354.57059 * 21 20 14 23 23 C 1.50704 * 119.99477 * 174.56864 * 21 20 14 24 24 H 1.09002 * 110.27721 * 54.36493 * 23 21 20 25 25 C 1.55503 * 110.36883 * 292.25205 * 23 21 20 26 26 C 1.55306 * 100.69484 * 204.61099 * 25 23 21 27 27 C 1.54388 * 102.43789 * 34.12713 * 26 25 23 28 28 O 1.43238 * 107.58790 * 338.54242 * 27 26 25 29 29 C 1.47071 * 87.88250 * 333.10342 * 11 10 9 30 30 H 0.97004 * 120.00571 * 359.97438 * 1 2 3 31 31 H 1.09006 * 113.41296 * 46.80521 * 9 7 2 32 32 H 1.08995 * 113.46550 * 24.87554 * 10 9 7 33 33 H 1.09000 * 113.46790 * 254.44393 * 10 9 7 34 34 H 1.08993 * 117.10171 * 3.14746 * 15 14 12 35 35 H 1.09006 * 118.28672 * 217.54960 * 15 14 12 36 36 H 1.09000 * 110.73188 * 154.31543 * 18 16 15 37 37 H 1.09000 * 110.88864 * 31.07870 * 18 16 15 38 38 H 1.08999 * 110.65880 * 278.99320 * 19 18 16 39 39 H 1.08993 * 110.65934 * 155.87229 * 19 18 16 40 40 H 1.08995 * 111.32883 * 86.73871 * 25 23 21 41 41 H 1.08997 * 111.14401 * 322.40642 * 25 23 21 42 42 H 1.08994 * 110.84943 * 275.83774 * 26 25 23 43 43 H 1.09000 * 110.84799 * 152.42185 * 26 25 23 44 44 H 1.08997 * 109.82740 * 98.05258 * 27 26 25 45 45 H 1.08993 * 109.82938 * 219.02514 * 27 26 25 46 46 H 1.08999 * 113.46147 * 141.68048 * 29 11 10 47 47 H 1.09005 * 113.46639 * 272.11791 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3575 0.9509 12 6 0.8345 -5.6114 1.2723 13 8 1.3921 -6.5605 0.7632 14 6 -0.2780 -5.8340 2.2641 15 6 -0.5146 -7.2657 2.8471 16 6 0.0248 -6.1463 3.7387 17 1 1.0451 -6.2063 4.1175 18 6 -0.9888 -5.3003 4.5427 19 6 -1.3732 -4.1807 3.5431 20 7 -1.4075 -4.8852 2.2406 21 6 -2.2928 -4.7014 1.2412 22 8 -2.1474 -5.2841 0.1875 23 6 -3.4633 -3.7718 1.4330 24 1 -3.1165 -2.7876 1.7478 25 6 -4.4523 -4.3560 2.4813 26 6 -5.7718 -3.6579 2.0529 27 6 -5.6186 -3.5695 0.5192 28 8 -4.2218 -3.6678 0.2175 29 6 0.8561 -3.0001 1.3927 30 1 -0.4851 0.8400 0.0004 31 1 0.4412 -2.5317 -0.7295 32 1 3.1384 -3.5658 0.4200 33 1 2.1852 -4.2532 -0.9637 34 1 0.1825 -8.0468 2.5439 35 1 -1.5411 -7.5918 3.0154 36 1 -0.5203 -4.8794 5.4323 37 1 -1.8626 -5.8935 4.8125 38 1 -0.6172 -3.3955 3.5357 39 1 -2.3536 -3.7699 3.7841 40 1 -4.1688 -4.0723 3.4948 41 1 -4.5318 -5.4388 2.3861 42 1 -5.8454 -2.6637 2.4933 43 1 -6.6366 -4.2645 2.3220 44 1 -6.1577 -4.3900 0.0459 45 1 -6.0076 -2.6157 0.1631 46 1 -0.2047 -2.8777 1.6118 47 1 1.4979 -2.6214 2.1883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271406758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:04 Heat of formation + Delta-G solvation = -48.409971 kcal Electronic energy + Delta-G solvation = -30912.133508 eV Core-core repulsion = 26869.006471 eV Total energy + Delta-G solvation = -4043.127037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18914 -40.96456 -40.10119 -38.96762 -38.43639 -34.70459 -34.50608 -33.02981 -31.65594 -30.98631 -30.47975 -27.45582 -26.85370 -25.60637 -24.49938 -23.97559 -22.67469 -22.39465 -21.38445 -21.06743 -19.49491 -18.95150 -18.50769 -17.88802 -17.55383 -17.32106 -16.76469 -16.55618 -16.36771 -16.18830 -15.78100 -15.57827 -15.15247 -14.82525 -14.76246 -14.29586 -14.21972 -13.99279 -13.87928 -13.55815 -13.36242 -13.26260 -13.20144 -12.81164 -12.76667 -12.69681 -12.65539 -12.36352 -12.21871 -12.03218 -11.96479 -11.84828 -11.45733 -11.28669 -11.12285 -11.07567 -10.76733 -10.55128 -10.50738 -9.77444 -9.62996 -8.16902 -6.30722 1.13868 1.41703 1.47296 1.49447 1.56808 1.68363 1.84147 2.43804 2.52220 2.87118 3.11281 3.24924 3.32395 3.38449 3.48542 3.71656 3.80913 3.88391 4.06567 4.10900 4.15015 4.16749 4.29033 4.29580 4.32963 4.39363 4.50429 4.55090 4.60432 4.68163 4.72343 4.73619 4.78031 4.81219 4.87707 4.94486 4.96055 4.97474 5.03952 5.17325 5.18760 5.30517 5.51566 5.76425 5.91575 6.17604 6.37375 6.76880 6.80681 6.99267 7.09036 7.39248 8.92795 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005147 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.834440 B = 5438.746666 C = 7215.288988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.025 3.975 10 C 0.101 3.899 11 N -0.636 5.636 12 C 0.564 3.436 13 O -0.598 6.598 14 C 0.008 3.992 15 C -0.107 4.107 16 C -0.096 4.096 17 H 0.135 0.865 18 C -0.090 4.090 19 C 0.081 3.919 20 N -0.575 5.575 21 C 0.525 3.475 22 O -0.576 6.576 23 C 0.068 3.932 24 H 0.101 0.899 25 C -0.130 4.130 26 C -0.140 4.140 27 C 0.033 3.967 28 O -0.401 6.401 29 C 0.127 3.873 30 H 0.265 0.735 31 H 0.017 0.983 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -5.890 18.238 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.006 3.994 10 C -0.021 4.021 11 N -0.368 5.368 12 C 0.354 3.646 13 O -0.480 6.480 14 C -0.082 4.082 15 C -0.146 4.146 16 C -0.115 4.115 17 H 0.153 0.847 18 C -0.127 4.127 19 C -0.039 4.039 20 N -0.310 5.310 21 C 0.314 3.686 22 O -0.454 6.454 23 C 0.008 3.992 24 H 0.119 0.881 25 C -0.168 4.168 26 C -0.177 4.177 27 C -0.043 4.043 28 O -0.320 6.320 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.213 -6.710 17.169 21.576 hybrid contribution 0.626 0.799 -1.249 1.610 sum -10.587 -5.911 15.920 20.012 Atomic orbital electron populations 1.70093 1.07534 1.27961 1.49695 1.25804 0.95579 1.02627 0.93730 0.85538 0.78273 0.78276 0.79116 1.20126 1.21046 1.18575 1.21100 0.93267 0.90044 1.52450 0.91293 1.20093 0.94014 0.92112 0.93215 1.23306 0.95091 0.92215 0.91476 1.49811 1.41860 1.05209 1.39886 1.19626 0.82962 0.80481 0.81530 1.90583 1.59281 1.41896 1.56275 1.21976 0.88879 0.97803 0.99502 1.23987 1.04077 0.89060 0.97478 1.24014 1.03054 0.98061 0.86364 0.84684 1.22541 0.98691 0.94330 0.97150 1.23350 1.04723 0.96139 0.79690 1.48174 1.26246 1.38519 1.18047 1.20962 0.83427 0.82066 0.82095 1.90711 1.75944 1.50935 1.27846 1.23022 0.91184 0.97880 0.87163 0.88103 1.23416 0.92953 1.01233 0.99149 1.23136 0.98295 1.03349 0.92897 1.23507 0.80513 1.02346 0.97942 1.88555 1.19348 1.94778 1.29323 1.23251 0.99601 0.76386 1.00317 0.92581 0.96492 0.88819 0.93968 0.87702 0.85848 0.85608 0.87337 0.90771 0.86119 0.85105 0.90216 0.88175 0.86891 0.90999 0.90279 0.92533 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.16 13.26 21.45 0.28 -50.88 16 2 C 0.02 1.23 5.46 84.66 0.46 1.69 16 3 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.53 -27.99 8.83 25.60 0.23 -27.77 16 8 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.03 1.30 3.77 -11.29 -0.04 1.26 16 10 C 0.10 4.80 8.19 83.18 0.68 5.48 16 11 N -0.64 -29.17 3.68 -858.82 -3.16 -32.33 16 12 C 0.56 25.41 7.86 87.66 0.69 26.09 16 13 O -0.60 -30.71 17.38 -3.02 -0.05 -30.76 16 14 C 0.01 0.27 2.43 4.09 0.01 0.28 16 15 C -0.11 -2.71 10.02 31.76 0.32 -2.39 16 16 C -0.10 -1.95 6.79 -10.03 -0.07 -2.02 16 17 H 0.14 2.51 8.14 -2.39 -0.02 2.50 16 18 C -0.09 -1.06 6.85 31.79 0.22 -0.84 16 19 C 0.08 1.52 6.35 86.73 0.55 2.07 16 20 N -0.57 -17.57 1.92 -761.10 -1.46 -19.03 16 21 C 0.52 20.04 7.01 87.66 0.61 20.65 16 22 O -0.58 -29.53 16.90 15.45 0.26 -29.27 16 23 C 0.07 2.04 3.05 30.71 0.09 2.13 16 24 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 25 C -0.13 -2.14 6.11 32.25 0.20 -1.94 16 26 C -0.14 -1.90 7.00 31.86 0.22 -1.68 16 27 C 0.03 0.75 7.80 72.45 0.56 1.32 16 28 O -0.40 -14.54 10.61 -130.50 -1.38 -15.93 16 29 C 0.13 5.61 6.95 83.09 0.58 6.19 16 30 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.02 1.04 8.11 -2.38 -0.02 1.02 16 32 H 0.09 4.02 8.10 -2.39 -0.02 4.00 16 33 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 2.87 7.94 -2.39 -0.02 2.85 16 35 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.61 6.63 -2.39 -0.02 1.60 16 39 H 0.12 1.44 5.43 -2.39 -0.01 1.42 16 40 H 0.13 1.11 6.52 -2.39 -0.02 1.10 16 41 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 2.50 5.59 -2.39 -0.01 2.49 16 47 H 0.09 3.61 8.10 -2.38 -0.02 3.60 16 Total: -1.00 -86.67 381.07 2.81 -83.86 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.98 Total: 20.75 kcal Atomic # 6 Polarization: 25.21 SS G_CDS: 5.31 Total: 30.52 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.34 Total: -102.25 kcal Atomic # 8 Polarization: -74.79 SS G_CDS: -1.18 Total: -75.96 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -86.67 2.81 -83.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271406758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.451 kcal (2) G-P(sol) polarization free energy of solvation -86.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds