Wall clock time and date at job start Tue Mar 31 2020 18:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48495 * 109.47042 * 239.99758 * 3 2 1 5 5 H 1.48503 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99529 * 3 2 1 7 7 C 1.37871 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46981 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47197 * 174.66605 * 10 9 7 12 12 C 1.47866 * 111.00043 * 176.26573 * 11 10 9 13 13 C 1.55023 * 104.96123 * 214.56448 * 12 11 10 14 14 C 1.54852 * 101.33990 * 36.58648 * 13 12 11 15 15 H 1.08997 * 109.29735 * 80.35155 * 14 13 12 16 16 C 1.48102 * 111.11046 * 55.53997 * 11 10 9 17 17 H 1.09004 * 110.34512 * 2.48012 * 16 11 10 18 18 C 1.51688 * 108.11216 * 242.63581 * 16 11 10 19 19 C 1.53159 * 109.17721 * 183.82525 * 18 16 11 20 20 C 1.50821 * 107.95135 * 59.13005 * 19 18 16 21 21 O 1.21279 * 119.76948 * 150.51745 * 20 19 18 22 22 N 1.33696 * 120.45546 * 330.54457 * 20 19 18 23 23 C 1.46499 * 117.18650 * 176.51839 * 22 20 19 24 24 C 1.52994 * 109.47508 * 269.98286 * 23 22 20 25 25 C 1.52994 * 109.47461 * 179.97438 * 24 23 22 26 26 F 1.39908 * 109.47134 * 59.99859 * 25 24 23 27 27 F 1.39899 * 109.47234 * 179.97438 * 25 24 23 28 28 F 1.39897 * 109.47427 * 299.99920 * 25 24 23 29 29 H 0.97001 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47393 * 59.99705 * 9 7 2 31 31 H 1.08999 * 109.47087 * 299.98980 * 9 7 2 32 32 H 1.08997 * 109.47569 * 54.65978 * 10 9 7 33 33 H 1.09005 * 109.46842 * 294.65627 * 10 9 7 34 34 H 1.09001 * 110.35933 * 95.66272 * 12 11 10 35 35 H 1.08999 * 110.35602 * 333.46638 * 12 11 10 36 36 H 1.09005 * 111.04930 * 154.60044 * 13 12 11 37 37 H 1.08997 * 111.05010 * 278.52800 * 13 12 11 38 38 H 1.08996 * 109.68696 * 63.82454 * 18 16 11 39 39 H 1.09000 * 109.43270 * 303.66802 * 18 16 11 40 40 H 1.09003 * 109.76236 * 299.51923 * 19 18 16 41 41 H 1.08997 * 109.76689 * 178.74455 * 19 18 16 42 42 H 1.09004 * 109.46532 * 29.97999 * 23 22 20 43 43 H 1.08995 * 109.47376 * 149.97300 * 23 22 20 44 44 H 1.09003 * 109.47049 * 300.00215 * 24 23 22 45 45 H 1.09003 * 109.47107 * 59.99518 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5153 -4.9303 0.1306 12 6 2.4372 -6.0833 0.0460 13 6 1.6280 -7.1906 -0.6765 14 6 0.8144 -6.3567 -1.6966 15 1 1.4452 -6.1209 -2.5537 16 6 0.4944 -5.0685 -0.9334 17 1 0.5352 -4.2155 -1.6109 18 6 -0.8698 -5.1291 -0.2730 19 6 -1.9374 -5.3681 -1.3448 20 6 -1.6140 -6.6659 -2.0418 21 8 -2.5087 -7.3361 -2.5121 22 7 -0.3478 -7.0828 -2.1443 23 6 -0.1218 -8.3901 -2.7657 24 6 -0.1461 -9.4773 -1.6896 25 6 0.0893 -10.8427 -2.3386 26 9 1.3338 -10.8469 -2.9777 27 9 0.0676 -11.8368 -1.3545 28 9 -0.9176 -11.0928 -3.2770 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6242 -2.5567 0.8904 32 1 2.9326 -3.5516 0.8406 33 1 2.8080 -3.6599 -0.9318 34 1 2.7240 -6.4135 1.0445 35 1 3.3215 -5.8199 -0.5342 36 1 2.2906 -7.8919 -1.1839 37 1 0.9693 -7.7110 0.0187 38 1 -1.0720 -4.1882 0.2388 39 1 -0.8879 -5.9467 0.4476 40 1 -1.9262 -4.5501 -2.0651 41 1 -2.9200 -5.4355 -0.8778 42 1 -0.9062 -8.5851 -3.4971 43 1 0.8479 -8.3930 -3.2634 44 1 0.6381 -9.2822 -0.9581 45 1 -1.1159 -9.4743 -1.1919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:05 Heat of formation + Delta-G solvation = -190.720939 kcal Electronic energy + Delta-G solvation = -30431.660359 eV Core-core repulsion = 25840.505515 eV Total energy + Delta-G solvation = -4591.154844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.37574 -47.88001 -47.83880 -41.14403 -38.65338 -36.10370 -34.22203 -33.45168 -32.11124 -31.23341 -28.41770 -28.18101 -26.16747 -24.63863 -23.43926 -22.89232 -21.77014 -21.28047 -20.06841 -18.83549 -18.80853 -18.00617 -17.71795 -16.91258 -16.82287 -16.31744 -15.86385 -15.19267 -14.95808 -14.76017 -14.65373 -14.48535 -14.29345 -14.08617 -14.01222 -13.94443 -13.89741 -13.72312 -13.55234 -12.97252 -12.83037 -12.56501 -12.42916 -12.22089 -12.01970 -11.92693 -11.57079 -11.45646 -11.28032 -11.06815 -10.91696 -10.80814 -10.61863 -10.56649 -10.04536 -9.60989 -9.45750 -9.22379 -8.99701 -8.43470 -7.97134 -6.08037 -4.10671 2.32395 2.55501 2.83097 3.28105 3.33403 3.35076 3.59336 3.71957 3.75886 4.10485 4.29357 4.39800 4.44706 4.56411 4.66817 4.68496 4.86832 4.97443 5.10878 5.20209 5.27607 5.29568 5.32340 5.44209 5.52094 5.57760 5.60795 5.73408 5.87448 5.91077 5.96030 6.12783 6.19519 6.23221 6.35336 6.51896 6.80226 7.24651 7.30554 7.33132 7.62038 7.75728 7.95579 8.02850 8.32765 8.95457 9.53697 11.03033 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023409 B = 0.002738 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.817881 B =10225.169217 C =10943.454784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.055 3.945 11 N -0.518 5.518 12 C 0.042 3.958 13 C -0.145 4.145 14 C 0.127 3.873 15 H 0.080 0.920 16 C 0.068 3.932 17 H 0.088 0.912 18 C -0.102 4.102 19 C -0.139 4.139 20 C 0.524 3.476 21 O -0.548 6.548 22 N -0.590 5.590 23 C 0.104 3.896 24 C -0.190 4.190 25 C 0.457 3.543 26 F -0.184 7.184 27 F -0.184 7.184 28 F -0.181 7.181 29 H 0.262 0.738 30 H 0.017 0.983 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -19.537 -3.607 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.072 4.072 11 N -0.243 5.243 12 C -0.087 4.087 13 C -0.184 4.184 14 C 0.022 3.978 15 H 0.098 0.902 16 C -0.041 4.041 17 H 0.105 0.895 18 C -0.140 4.140 19 C -0.179 4.179 20 C 0.314 3.686 21 O -0.425 6.425 22 N -0.321 5.321 23 C -0.020 4.020 24 C -0.229 4.229 25 C 0.403 3.597 26 F -0.166 7.166 27 F -0.166 7.166 28 F -0.162 7.162 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.309 -19.709 -3.360 19.996 hybrid contribution 1.115 0.753 -0.811 1.571 sum 1.423 -18.956 -4.172 19.462 Atomic orbital electron populations 1.69938 1.05978 1.26823 1.50324 1.24970 0.94841 0.99164 0.95162 0.86668 0.79613 0.83161 0.78616 1.20308 1.21252 1.20209 1.21119 0.92957 0.90989 1.51316 0.92837 1.19168 0.93923 0.90280 0.97704 1.22554 0.97276 0.88470 0.98882 1.64013 1.13431 1.02882 1.43932 1.23007 0.94724 0.90535 1.00406 1.23280 0.98893 0.98133 0.98062 1.21684 0.85971 0.93021 0.97168 0.90208 1.22156 0.94120 0.95140 0.92669 0.89454 1.21286 0.91577 1.04344 0.96838 1.21899 1.01637 0.94792 0.99589 1.20686 0.81313 0.88049 0.78573 1.90708 1.45348 1.57992 1.48471 1.46817 1.06370 1.18631 1.60289 1.21371 1.04203 0.81998 0.94461 1.23495 1.08043 0.89829 1.01565 1.20458 0.73910 0.88448 0.76933 1.93188 1.43410 1.96972 1.83009 1.93194 1.96224 1.65053 1.62113 1.93209 1.60819 1.95302 1.66895 0.92862 0.96500 0.95505 0.91471 0.96020 0.90116 0.93386 0.90553 0.90039 0.88834 0.91438 0.87900 0.87900 0.88101 0.89335 0.86520 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.03 0.62 4.57 -27.88 -0.13 0.49 16 10 C 0.06 1.03 4.76 -3.82 -0.02 1.01 16 11 N -0.52 -7.88 4.82 -224.26 -1.08 -8.96 16 12 C 0.04 0.49 6.74 -2.22 -0.01 0.47 16 13 C -0.14 -1.37 4.74 -24.69 -0.12 -1.49 16 14 C 0.13 1.41 3.10 -68.14 -0.21 1.20 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.07 0.95 2.04 -67.66 -0.14 0.82 16 17 H 0.09 1.42 6.05 -51.93 -0.31 1.11 16 18 C -0.10 -1.40 5.45 -27.31 -0.15 -1.55 16 19 C -0.14 -1.77 6.15 -27.74 -0.17 -1.94 16 20 C 0.52 7.03 7.44 -11.41 -0.08 6.94 16 21 O -0.55 -8.84 16.32 5.56 0.09 -8.74 16 22 N -0.59 -6.62 2.63 -166.87 -0.44 -7.06 16 23 C 0.10 0.99 4.66 -4.05 -0.02 0.97 16 24 C -0.19 -1.60 5.29 -26.74 -0.14 -1.74 16 25 C 0.46 4.16 3.16 37.15 0.12 4.28 16 26 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 27 F -0.18 -1.80 17.32 2.25 0.04 -1.76 16 28 F -0.18 -1.90 16.80 2.25 0.04 -1.87 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.02 0.41 6.41 -51.93 -0.33 0.08 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.55 7.70 -51.93 -0.40 0.15 16 36 H 0.08 0.58 7.95 -51.93 -0.41 0.16 16 37 H 0.08 0.76 7.00 -51.93 -0.36 0.40 16 38 H 0.09 1.50 8.06 -51.93 -0.42 1.08 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.10 1.11 6.79 -51.93 -0.35 0.76 16 43 H 0.09 0.70 7.65 -51.93 -0.40 0.30 16 44 H 0.12 0.84 5.24 -51.93 -0.27 0.56 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -29.61 363.52 -8.21 -37.82 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.60 Total: -1.08 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.49 Total: -3.27 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.78 Total: -40.72 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.11 Total: -5.29 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.61 -8.21 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.906 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds