Wall clock time and date at job start Tue Mar 31 2020 17:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48508 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47402 * 299.99449 * 3 2 1 6 6 H 1.48499 * 109.47443 * 59.99951 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47059 * 180.02562 * 19 18 16 21 21 N 1.46898 * 109.47043 * 179.97438 * 20 19 18 22 22 C 1.46847 * 110.99713 * 45.79007 * 21 20 19 23 23 C 1.53045 * 109.52473 * 185.83655 * 22 21 20 24 24 C 1.53118 * 109.27504 * 300.82529 * 23 22 21 25 25 O 1.42905 * 109.57250 * 177.58614 * 24 23 22 26 26 C 1.53111 * 109.16384 * 57.65290 * 24 23 22 27 27 C 1.46843 * 111.00000 * 169.99688 * 21 20 19 28 28 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 31 31 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 34 34 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 35 35 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 36 36 H 1.09000 * 109.46734 * 300.00387 * 20 19 18 37 37 H 1.08999 * 109.46930 * 59.99994 * 20 19 18 38 38 H 1.09002 * 109.46676 * 305.85665 * 22 21 20 39 39 H 1.09006 * 109.46365 * 65.82318 * 22 21 20 40 40 H 1.08992 * 109.50317 * 180.88005 * 23 22 21 41 41 H 1.09005 * 109.49414 * 60.76173 * 23 22 21 42 42 H 1.08997 * 109.52127 * 297.74083 * 24 23 22 43 43 H 0.96701 * 113.99614 * 60.28305 * 25 24 23 44 44 H 1.09003 * 109.50857 * 182.40148 * 26 24 23 45 45 H 1.09007 * 109.53996 * 62.30494 * 26 24 23 46 46 H 1.09002 * 109.46344 * 294.18144 * 27 21 20 47 47 H 1.09004 * 109.46191 * 54.16115 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5434 -7.5634 0.5263 21 7 -4.0102 -7.6431 0.5414 22 6 -4.5930 -6.8177 -0.5241 23 6 -6.1174 -6.8087 -0.3883 24 6 -6.6418 -8.2440 -0.4842 25 8 -8.0592 -8.2490 -0.3020 26 6 -5.9829 -9.0938 0.6058 27 6 -4.4625 -9.0365 0.4411 28 1 -0.4851 0.8400 -0.0004 29 1 3.9514 -2.4854 -0.0024 30 1 5.2799 -4.5419 0.1972 31 1 4.1670 -6.7250 0.4122 32 1 1.7151 -6.8682 0.4386 33 1 -0.1203 -6.8311 0.4431 34 1 -2.5006 -5.5246 1.2203 35 1 -2.5086 -5.6979 -0.5512 36 1 -2.1563 -8.1412 -0.3129 37 1 -2.1484 -7.9672 1.4585 38 1 -4.2150 -5.7986 -0.4420 39 1 -4.3173 -7.2299 -1.4948 40 1 -6.5505 -6.2087 -1.1885 41 1 -6.3941 -6.3838 0.5767 42 1 -6.3991 -8.6558 -1.4637 43 1 -8.5420 -7.7291 -0.9590 44 1 -6.3200 -10.1265 0.5159 45 1 -6.2576 -8.7055 1.5867 46 1 -4.1874 -9.4384 -0.5341 47 1 -3.9899 -9.6291 1.2245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433995522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:27 Heat of formation + Delta-G solvation = -77.065494 kcal Electronic energy + Delta-G solvation = -28313.618602 eV Core-core repulsion = 24269.248968 eV Total energy + Delta-G solvation = -4044.369634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.84367 -39.44844 -38.09827 -36.87961 -36.33553 -34.45713 -32.37356 -32.25746 -31.24872 -30.56475 -28.93624 -27.91212 -25.39773 -24.48575 -23.56123 -22.86767 -21.68234 -21.07231 -20.12978 -19.88900 -18.04959 -17.65311 -17.52731 -16.52131 -16.10200 -15.68278 -15.34720 -14.99001 -14.73217 -14.58609 -14.47675 -14.26574 -14.10853 -13.89036 -13.80599 -13.54417 -13.23845 -12.89897 -12.68727 -12.52693 -12.37120 -12.01984 -11.72810 -11.62954 -11.50666 -11.38855 -11.34640 -11.20632 -11.12560 -10.91739 -10.78188 -10.60215 -10.44762 -10.06797 -9.57812 -8.89488 -8.87446 -8.59086 -8.55971 -8.27702 -7.31734 -6.44972 -4.04885 1.70890 2.30901 3.11273 3.12419 3.18018 3.31526 3.74709 3.85197 3.92965 3.98591 4.45377 4.49922 4.63500 4.74099 4.80885 4.94467 4.99338 5.06109 5.07934 5.16864 5.20649 5.29146 5.36245 5.41647 5.45279 5.51845 5.56338 5.61266 5.71449 5.78312 5.85955 5.94582 5.97045 6.04908 6.11028 6.14512 6.55277 6.68035 6.73564 6.80153 6.90308 6.95991 7.05393 7.23071 7.28806 7.32669 7.68567 7.91439 8.10417 8.94706 9.08965 9.67106 10.68874 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002493 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.180975 B =11227.090286 C =13163.142517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.404 4.404 8 H 0.095 0.905 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.227 4.227 16 C 0.555 3.445 17 O -0.500 6.500 18 N -0.744 5.744 19 C 0.121 3.879 20 C 0.047 3.953 21 N -0.534 5.534 22 C 0.046 3.954 23 C -0.149 4.149 24 C 0.103 3.897 25 O -0.569 6.569 26 C -0.109 4.109 27 C 0.059 3.941 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.391 0.609 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.378 0.622 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 -17.367 -1.085 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.112 0.888 9 O -0.022 6.022 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.344 3.656 17 O -0.374 6.374 18 N -0.401 5.401 19 C -0.003 4.003 20 C -0.081 4.081 21 N -0.259 5.259 22 C -0.082 4.082 23 C -0.187 4.187 24 C 0.044 3.956 25 O -0.374 6.374 26 C -0.147 4.147 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.225 0.775 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.225 0.775 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.357 -16.525 -0.231 18.091 hybrid contribution 1.036 0.377 -1.247 1.665 sum -6.321 -16.148 -1.479 17.404 Atomic orbital electron populations 1.70137 1.05968 1.27623 1.42612 1.25389 0.95807 0.98966 0.96186 0.85661 0.79187 0.80272 0.78360 1.18973 1.20022 1.19997 1.21547 0.91921 0.81108 1.53359 0.88813 1.84173 1.33558 1.10986 1.73468 1.19279 0.89861 0.87415 0.90523 1.21163 0.93385 0.99348 1.11799 1.20895 0.98644 0.92318 0.95093 1.20459 0.94061 0.97123 1.13386 1.20753 0.93847 0.95488 0.95634 1.18837 0.91878 0.92166 1.20319 1.18212 0.87822 0.82706 0.76829 1.90949 1.65795 1.33821 1.46806 1.45812 1.06204 1.09315 1.78774 1.21301 0.81133 0.95205 1.02696 1.22265 0.87444 0.96724 1.01669 1.61931 1.07240 1.09674 1.47081 1.22245 0.94301 0.99452 0.92213 1.22328 0.95515 0.97198 1.03668 1.21876 0.80625 0.95152 0.97962 1.86507 1.18298 1.75051 1.57557 1.21526 0.93572 0.99864 0.99740 1.22052 0.95010 0.89163 1.00643 0.91905 0.85061 0.87187 0.87286 0.87087 0.77462 0.90837 0.91632 0.94188 0.89836 0.88877 0.94605 0.91144 0.89943 0.93162 0.77533 0.90887 0.90111 0.94651 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.09 13.67 55.48 0.76 -24.33 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.40 -11.42 9.49 30.90 0.29 -11.12 16 8 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 9 O -0.12 -3.65 7.84 -21.05 -0.16 -3.82 16 10 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 11 C -0.24 -5.09 9.16 -39.44 -0.36 -5.46 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 13 C -0.23 -3.75 10.02 -39.61 -0.40 -4.14 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -4.91 5.89 -104.81 -0.62 -5.52 16 16 C 0.55 12.15 7.76 -12.47 -0.10 12.05 16 17 O -0.50 -13.69 15.17 -16.56 -0.25 -13.94 16 18 N -0.74 -11.79 5.51 -61.34 -0.34 -12.13 16 19 C 0.12 1.72 4.92 -4.04 -0.02 1.70 16 20 C 0.05 0.49 5.39 -3.82 -0.02 0.47 16 21 N -0.53 -5.50 4.81 -234.66 -1.13 -6.63 16 22 C 0.05 0.47 4.85 -3.83 -0.02 0.45 16 23 C -0.15 -1.36 5.72 -26.65 -0.15 -1.51 16 24 C 0.10 0.88 3.54 -26.61 -0.09 0.79 16 25 O -0.57 -5.09 13.33 -35.23 -0.47 -5.56 16 26 C -0.11 -0.94 5.75 -26.65 -0.15 -1.09 16 27 C 0.06 0.50 5.42 -3.83 -0.02 0.48 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.13 2.78 5.64 -52.48 -0.30 2.48 16 30 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.11 1.42 6.40 -52.48 -0.34 1.08 16 33 H 0.39 4.85 6.50 -40.82 -0.27 4.58 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.10 5.81 -51.93 -0.30 0.80 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.38 1.87 9.09 45.56 0.41 2.29 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -35.78 379.58 -9.69 -45.46 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.01 Total: 9.39 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.78 Total: -9.65 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.71 Total: -43.09 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.89 Total: -23.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.78 -9.69 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433995522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.604 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds