Wall clock time and date at job start Tue Mar 31 2020 17:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48508 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47402 * 299.99449 * 3 2 1 6 6 H 1.48499 * 109.47443 * 59.99951 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47059 * 180.02562 * 19 18 16 21 21 N 1.46898 * 109.47043 * 179.97438 * 20 19 18 22 22 C 1.46847 * 110.99713 * 45.79007 * 21 20 19 23 23 C 1.53045 * 109.52473 * 185.83655 * 22 21 20 24 24 C 1.53118 * 109.27504 * 300.82529 * 23 22 21 25 25 O 1.42905 * 109.57250 * 177.58614 * 24 23 22 26 26 C 1.53111 * 109.16384 * 57.65290 * 24 23 22 27 27 C 1.46843 * 111.00000 * 169.99688 * 21 20 19 28 28 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 31 31 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 34 34 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 35 35 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 36 36 H 1.09000 * 109.46734 * 300.00387 * 20 19 18 37 37 H 1.08999 * 109.46930 * 59.99994 * 20 19 18 38 38 H 1.09002 * 109.46676 * 305.85665 * 22 21 20 39 39 H 1.09006 * 109.46365 * 65.82318 * 22 21 20 40 40 H 1.08992 * 109.50317 * 180.88005 * 23 22 21 41 41 H 1.09005 * 109.49414 * 60.76173 * 23 22 21 42 42 H 1.08997 * 109.52127 * 297.74083 * 24 23 22 43 43 H 0.96701 * 113.99614 * 60.28305 * 25 24 23 44 44 H 1.09003 * 109.50857 * 182.40148 * 26 24 23 45 45 H 1.09007 * 109.53996 * 62.30494 * 26 24 23 46 46 H 1.09002 * 109.46344 * 294.18144 * 27 21 20 47 47 H 1.09004 * 109.46191 * 54.16115 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5434 -7.5634 0.5263 21 7 -4.0102 -7.6431 0.5414 22 6 -4.5930 -6.8177 -0.5241 23 6 -6.1174 -6.8087 -0.3883 24 6 -6.6418 -8.2440 -0.4842 25 8 -8.0592 -8.2490 -0.3020 26 6 -5.9829 -9.0938 0.6058 27 6 -4.4625 -9.0365 0.4411 28 1 -0.4851 0.8400 -0.0004 29 1 3.9514 -2.4854 -0.0024 30 1 5.2799 -4.5419 0.1972 31 1 4.1670 -6.7250 0.4122 32 1 1.7151 -6.8682 0.4386 33 1 -0.1203 -6.8311 0.4431 34 1 -2.5006 -5.5246 1.2203 35 1 -2.5086 -5.6979 -0.5512 36 1 -2.1563 -8.1412 -0.3129 37 1 -2.1484 -7.9672 1.4585 38 1 -4.2150 -5.7986 -0.4420 39 1 -4.3173 -7.2299 -1.4948 40 1 -6.5505 -6.2087 -1.1885 41 1 -6.3941 -6.3838 0.5767 42 1 -6.3991 -8.6558 -1.4637 43 1 -8.5420 -7.7291 -0.9590 44 1 -6.3200 -10.1265 0.5159 45 1 -6.2576 -8.7055 1.5867 46 1 -4.1874 -9.4384 -0.5341 47 1 -3.9899 -9.6291 1.2245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433995522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:26 Heat of formation + Delta-G solvation = -106.328739 kcal Electronic energy + Delta-G solvation = -28314.887551 eV Core-core repulsion = 24269.248968 eV Total energy + Delta-G solvation = -4045.638583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31490 -40.48368 -39.72365 -38.03298 -37.70712 -35.81372 -34.32691 -33.33787 -32.08174 -31.90115 -30.56579 -29.04531 -27.35232 -25.48090 -24.57023 -24.03728 -23.12425 -22.25862 -21.51411 -20.83585 -19.84821 -19.22651 -18.30310 -17.88292 -17.45815 -16.75805 -16.61548 -16.34051 -16.03023 -15.86345 -15.77959 -15.60146 -15.30776 -15.28180 -15.22902 -14.70897 -14.49542 -14.27511 -14.14983 -13.81693 -13.54892 -13.21433 -13.03286 -12.83756 -12.69640 -12.61573 -12.53726 -12.33566 -12.27260 -12.14818 -12.10356 -12.08512 -11.43166 -11.29790 -10.84636 -10.78778 -10.65092 -10.12223 -9.77907 -9.35777 -9.03302 -8.44819 -6.15757 0.12687 0.73261 1.32086 1.42777 1.51947 2.09196 2.11832 2.15712 2.87832 2.97003 3.22795 3.26759 3.47331 3.65976 3.77882 3.84850 3.99512 4.04474 4.09407 4.13318 4.21732 4.29592 4.33577 4.41179 4.49591 4.53311 4.55021 4.64141 4.78622 4.82965 4.87402 4.89723 4.92887 4.98886 5.03773 5.08167 5.14251 5.14832 5.31296 5.48345 5.49370 5.61650 5.70402 5.96148 5.97629 6.05513 6.17770 6.68909 6.84231 6.94630 7.47697 7.80605 8.75925 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002493 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.180975 B =11227.090286 C =13163.142517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.023 4.023 3 Si 1.022 2.978 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.427 4.427 8 H 0.107 0.893 9 O -0.189 6.189 10 C 0.148 3.852 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.029 4.029 15 C -0.245 4.245 16 C 0.548 3.452 17 O -0.569 6.569 18 N -0.716 5.716 19 C 0.123 3.877 20 C 0.061 3.939 21 N -0.548 5.548 22 C 0.046 3.954 23 C -0.145 4.145 24 C 0.105 3.895 25 O -0.584 6.584 26 C -0.109 4.109 27 C 0.062 3.938 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.413 0.587 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.393 0.607 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 -21.761 -1.098 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.503 4.503 8 H 0.124 0.876 9 O -0.092 6.092 10 C 0.092 3.908 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.250 4.250 16 C 0.338 3.662 17 O -0.448 6.448 18 N -0.372 5.372 19 C -0.001 4.001 20 C -0.067 4.067 21 N -0.274 5.274 22 C -0.082 4.082 23 C -0.183 4.183 24 C 0.046 3.954 25 O -0.392 6.392 26 C -0.147 4.147 27 C -0.065 4.065 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.251 0.749 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.243 0.757 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.551 -21.051 -0.242 21.539 hybrid contribution 0.304 1.256 -1.212 1.772 sum -4.247 -19.795 -1.454 20.297 Atomic orbital electron populations 1.70330 1.08359 1.28487 1.46951 1.26761 0.96748 1.03130 0.95581 0.84500 0.78440 0.74487 0.78495 1.16819 1.19348 1.19448 1.22075 0.92691 0.81814 1.53671 0.87570 1.84179 1.35183 1.12175 1.77646 1.20113 0.91697 0.87613 0.91336 1.21300 0.92309 1.00983 1.13162 1.21439 1.00716 0.91308 0.92369 1.21189 0.93978 0.98417 1.08273 1.21324 0.94428 0.95613 0.93324 1.19289 0.92254 0.92943 1.20498 1.18544 0.88290 0.83318 0.76070 1.90933 1.67161 1.36620 1.50115 1.45502 1.07113 1.08283 1.76285 1.21331 0.79809 0.98077 1.00909 1.22151 0.87771 0.93375 1.03386 1.61932 1.07106 1.11128 1.47265 1.22172 0.95003 0.98247 0.92742 1.22287 0.94820 0.98196 1.03011 1.21871 0.80539 0.94357 0.98599 1.86471 1.18557 1.75542 1.58675 1.21539 0.93909 1.00443 0.98830 1.22108 0.94777 0.87800 1.01851 0.92059 0.85994 0.82883 0.81723 0.81970 0.74858 0.93534 0.93120 0.92095 0.88102 0.91504 0.93790 0.90120 0.91844 0.91883 0.75702 0.89624 0.91769 0.93418 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.61 13.67 21.62 0.30 -59.31 16 2 C -0.02 -1.38 5.49 84.85 0.47 -0.92 16 3 Si 1.02 44.51 29.55 68.60 2.03 46.54 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.43 -25.95 9.49 67.93 0.64 -25.31 16 8 H 0.11 5.80 5.21 -2.91 -0.02 5.78 16 9 O -0.19 -12.11 7.84 0.84 0.01 -12.11 16 10 C 0.15 7.62 6.66 22.91 0.15 7.77 16 11 C -0.26 -11.01 9.16 22.36 0.20 -10.81 16 12 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 13 C -0.20 -5.17 10.02 22.25 0.22 -4.95 16 14 C -0.03 -0.83 9.53 22.52 0.21 -0.62 16 15 C -0.25 -10.56 5.89 -19.99 -0.12 -10.68 16 16 C 0.55 24.85 7.76 86.70 0.67 25.53 16 17 O -0.57 -33.92 15.17 16.92 0.26 -33.66 16 18 N -0.72 -22.11 5.51 -466.26 -2.57 -24.68 16 19 C 0.12 3.56 4.92 86.38 0.43 3.99 16 20 C 0.06 1.13 5.39 86.30 0.46 1.60 16 21 N -0.55 -10.66 4.81 -896.33 -4.31 -14.96 16 22 C 0.05 0.96 4.85 86.33 0.42 1.38 16 23 C -0.14 -2.66 5.72 30.65 0.18 -2.48 16 24 C 0.11 1.67 3.54 30.67 0.11 1.78 16 25 O -0.58 -9.84 13.33 -148.98 -1.99 -11.83 16 26 C -0.11 -1.70 5.75 30.64 0.18 -1.52 16 27 C 0.06 0.88 5.42 86.33 0.47 1.35 16 28 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 29 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 30 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.16 3.02 6.40 -2.91 -0.02 3.00 16 33 H 0.41 8.75 6.50 -92.71 -0.60 8.15 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.65 6.21 -2.39 -0.01 1.63 16 36 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.73 5.81 -2.39 -0.01 1.71 16 39 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.39 3.49 9.09 -74.06 -0.67 2.82 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.10 1.11 8.12 -2.38 -0.02 1.09 16 Total: -1.00 -91.12 379.58 -1.62 -92.74 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.26 Total: 32.17 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.92 Total: -14.90 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -6.58 Total: -98.95 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -1.72 Total: -57.60 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -91.12 -1.62 -92.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433995522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.591 kcal (2) G-P(sol) polarization free energy of solvation -91.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds