Wall clock time and date at job start Tue Mar 31 2020 17:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48494 * 109.46945 * 270.00069 * 3 2 1 5 5 H 1.48494 * 109.47325 * 30.00128 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00240 * 3 2 1 7 7 C 1.39932 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99917 * 195.59646 * 7 2 1 9 9 C 1.41413 * 120.00202 * 15.59524 * 7 2 1 10 10 C 1.40770 * 120.21048 * 209.18270 * 9 7 2 11 11 C 1.37647 * 119.88528 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31697 * 0.02562 * 11 10 9 13 13 C 1.39240 * 120.42914 * 359.72120 * 12 11 10 14 14 N 1.39966 * 119.94636 * 180.30870 * 13 12 11 15 15 C 1.34768 * 120.00039 * 33.26959 * 14 13 12 16 16 O 1.21588 * 120.00098 * 5.14895 * 15 14 13 17 17 N 1.34773 * 120.00101 * 185.14773 * 15 14 13 18 18 C 1.46501 * 120.00293 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47233 * 180.02562 * 18 17 15 20 20 O 1.42897 * 109.47132 * 65.00155 * 19 18 17 21 21 C 1.42905 * 114.00161 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47006 * 179.97438 * 21 20 19 23 23 H 1.08995 * 110.75224 * 54.30485 * 22 21 20 24 24 C 1.55311 * 110.84558 * 177.77053 * 22 21 20 25 25 C 1.55206 * 100.82680 * 152.18018 * 24 22 21 26 26 O 1.43649 * 105.25783 * 323.81689 * 25 24 22 27 27 C 1.43241 * 109.97211 * 24.28601 * 26 25 24 28 28 C 1.38276 * 120.11114 * 0.55533 * 13 12 11 29 29 H 0.97006 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05856 * 0.04285 * 10 9 7 31 31 H 1.07995 * 119.84131 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.78240 * 180.02562 * 12 11 10 33 33 H 0.97000 * 119.99437 * 213.27646 * 14 13 12 34 34 H 0.97003 * 119.99845 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47032 * 300.00289 * 18 17 15 36 36 H 1.08998 * 109.46998 * 60.00423 * 18 17 15 37 37 H 1.08997 * 109.47257 * 184.99812 * 19 18 17 38 38 H 1.09004 * 109.47307 * 305.00378 * 19 18 17 39 39 H 1.08997 * 109.46989 * 300.00059 * 21 20 19 40 40 H 1.09006 * 109.46843 * 60.00007 * 21 20 19 41 41 H 1.08993 * 111.12675 * 270.24599 * 24 22 21 42 42 H 1.09002 * 111.12176 * 34.40692 * 24 22 21 43 43 H 1.08994 * 110.36877 * 204.80324 * 25 24 22 44 44 H 1.09000 * 110.21006 * 82.75097 * 25 24 22 45 45 H 1.08998 * 109.82806 * 238.77186 * 27 26 25 46 46 H 1.09005 * 109.90270 * 117.84325 * 27 26 25 47 47 H 1.07997 * 120.16178 * 179.72000 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0581 -1.2292 0.2509 9 6 1.3399 -2.4138 -0.3303 10 6 1.7701 -3.6368 0.2183 11 6 1.1153 -4.8028 -0.1076 12 6 0.0346 -4.7792 -0.9740 13 6 -0.4053 -3.5763 -1.5202 14 7 -1.5023 -3.5633 -2.3894 15 6 -2.5090 -4.4426 -2.2170 16 8 -2.5104 -5.1839 -1.2533 17 7 -3.5142 -4.5001 -3.1129 18 6 -4.6083 -5.4563 -2.9259 19 6 -5.6092 -5.3171 -4.0747 20 8 -4.9819 -5.6957 -5.3015 21 6 -5.8354 -5.6020 -6.4439 22 6 -5.0630 -6.0284 -7.6939 23 1 -4.6278 -7.0187 -7.5598 24 6 -5.9781 -5.9921 -8.9482 25 6 -4.9332 -5.7225 -10.0637 26 8 -3.9665 -4.8406 -9.4710 27 6 -3.9739 -4.9927 -8.0467 28 6 0.2430 -2.3951 -1.2093 29 1 -0.4850 0.8401 0.0004 30 1 2.6122 -3.6601 0.8941 31 1 1.4462 -5.7407 0.3133 32 1 -0.4732 -5.6992 -1.2235 33 1 -1.5378 -2.9215 -3.1158 34 1 -3.5129 -3.9089 -3.8820 35 1 -4.2072 -6.4697 -2.9147 36 1 -5.1102 -5.2537 -1.9798 37 1 -6.4665 -5.9645 -3.8901 38 1 -5.9435 -4.2818 -4.1420 39 1 -6.6971 -6.2556 -6.3082 40 1 -6.1748 -4.5727 -6.5604 41 1 -6.4786 -6.9488 -9.0972 42 1 -6.7008 -5.1786 -8.8838 43 1 -5.4075 -5.2432 -10.9200 44 1 -4.4580 -6.6551 -10.3680 45 1 -4.2046 -4.0380 -7.5741 46 1 -3.0013 -5.3483 -7.7064 47 1 -0.0947 -1.4623 -1.6361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476610876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:52 Heat of formation + Delta-G solvation = -103.746894 kcal Electronic energy + Delta-G solvation = -27737.705804 eV Core-core repulsion = 23692.179178 eV Total energy + Delta-G solvation = -4045.526626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00847 -39.78713 -38.25998 -37.25687 -34.81607 -34.07379 -33.28680 -33.06610 -30.29921 -29.53839 -29.32606 -27.76020 -25.83455 -25.15163 -23.13373 -22.70322 -21.39803 -21.09788 -21.00904 -19.86976 -18.08001 -17.51994 -17.31935 -16.95949 -16.50664 -16.21312 -15.78997 -15.22053 -15.11422 -14.94952 -14.55982 -14.48412 -14.23847 -13.77698 -13.69524 -13.41573 -13.10662 -12.86972 -12.71172 -12.35662 -12.27020 -12.05516 -11.78603 -11.65802 -11.61652 -11.32862 -11.20532 -11.15748 -11.04080 -10.71782 -10.42396 -10.06398 -9.97552 -9.86467 -9.82704 -9.45789 -9.22750 -8.88311 -8.84168 -7.27825 -6.85063 -6.63586 -4.31049 2.77702 2.92890 3.07035 3.11265 3.14671 3.15229 3.28487 3.51592 3.79680 3.97412 3.99455 4.33116 4.40179 4.63384 4.67594 4.72099 4.73165 4.78599 4.85774 4.89383 5.00451 5.07298 5.10923 5.25774 5.34522 5.41341 5.52619 5.61494 5.71327 5.72858 5.77188 6.31330 6.59101 6.61926 6.74331 6.77298 6.78321 6.86487 7.05912 7.13556 7.26666 7.45575 7.71330 7.90950 8.04136 8.09440 8.34032 8.53207 8.67291 8.95976 8.99052 9.13509 10.29522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.002164 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.595792 B =12934.215261 C =13890.545295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.078 0.922 9 C 0.123 3.877 10 C -0.226 4.226 11 C -0.088 4.088 12 C -0.223 4.223 13 C 0.164 3.836 14 N -0.678 5.678 15 C 0.701 3.299 16 O -0.575 6.575 17 N -0.747 5.747 18 C 0.144 3.856 19 C 0.051 3.949 20 O -0.382 6.382 21 C 0.072 3.928 22 C -0.122 4.122 23 H 0.095 0.905 24 C -0.150 4.150 25 C 0.051 3.949 26 O -0.386 6.386 27 C 0.059 3.941 28 C -0.181 4.181 29 H 0.278 0.722 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.396 0.604 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 -7.959 -17.156 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.096 0.904 9 C 0.120 3.880 10 C -0.246 4.246 11 C -0.107 4.107 12 C -0.244 4.244 13 C 0.072 3.928 14 N -0.324 5.324 15 C 0.401 3.599 16 O -0.452 6.452 17 N -0.405 5.405 18 C 0.020 3.980 19 C -0.026 4.026 20 O -0.302 6.302 21 C -0.004 4.004 22 C -0.141 4.141 23 H 0.113 0.887 24 C -0.188 4.188 25 C -0.025 4.025 26 O -0.305 6.305 27 C -0.017 4.017 28 C -0.203 4.203 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.230 0.770 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.687 -8.439 -16.379 24.198 hybrid contribution -0.293 1.329 -0.467 1.439 sum -15.980 -7.109 -16.845 24.283 Atomic orbital electron populations 1.69841 1.07408 1.28825 1.36665 1.25853 0.94717 1.01027 0.92429 0.86345 0.80484 0.80885 0.79137 1.19443 1.20506 1.18710 1.19487 0.97295 0.90812 1.42342 0.90418 1.17339 0.90387 0.92193 0.88055 1.21061 1.04304 0.93238 1.05982 1.20435 0.95812 0.96654 0.97783 1.20369 1.01171 0.95787 1.07121 1.17406 0.87083 0.94550 0.93790 1.42571 1.19784 1.36641 1.33362 1.15928 0.79557 0.81661 0.82724 1.90926 1.78432 1.45053 1.30793 1.44997 1.24598 1.42745 1.28122 1.21133 0.86883 0.93912 0.96116 1.22820 0.95705 0.99809 0.84233 1.87964 1.38713 1.88597 1.14887 1.22426 0.92760 1.00094 0.85143 1.22731 0.96442 1.01212 0.93674 0.88694 1.23315 0.98299 1.03362 0.93784 1.23392 0.88790 0.94278 0.96053 1.88431 1.59967 1.62721 1.19415 1.23175 0.98988 0.98601 0.80970 1.20932 1.01970 0.94418 1.03003 0.91176 0.88867 0.89057 0.87837 0.77032 0.77106 0.90840 0.90097 0.91554 0.92438 0.92782 0.92832 0.89509 0.90083 0.89623 0.92057 0.90974 0.90748 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.06 11.15 55.55 0.62 -20.44 16 2 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 3 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.59 9.04 -37.74 -0.34 -12.93 16 8 H 0.08 2.01 7.89 -52.48 -0.41 1.59 16 9 C 0.12 3.35 5.52 -106.85 -0.59 2.76 16 10 C -0.23 -5.76 9.79 -38.84 -0.38 -6.14 16 11 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 12 C -0.22 -5.51 8.66 -39.10 -0.34 -5.85 16 13 C 0.16 3.97 6.27 -83.76 -0.53 3.44 16 14 N -0.68 -13.34 5.35 -14.27 -0.08 -13.42 16 15 C 0.70 13.40 8.30 -86.93 -0.72 12.68 16 16 O -0.58 -13.36 14.01 5.29 0.07 -13.29 16 17 N -0.75 -10.19 5.51 -65.23 -0.36 -10.55 16 18 C 0.14 1.64 6.06 -4.04 -0.02 1.61 16 19 C 0.05 0.40 6.07 37.16 0.23 0.63 16 20 O -0.38 -3.43 10.19 -35.23 -0.36 -3.79 16 21 C 0.07 0.47 5.26 37.16 0.20 0.67 16 22 C -0.12 -0.83 3.26 -88.67 -0.29 -1.12 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.15 -0.76 6.64 -24.34 -0.16 -0.93 16 25 C 0.05 0.34 7.78 38.33 0.30 0.64 16 26 O -0.39 -3.92 11.36 -35.23 -0.40 -4.32 16 27 C 0.06 0.52 7.31 37.88 0.28 0.80 16 28 C -0.18 -4.72 8.57 -38.68 -0.33 -5.05 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 30 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.10 2.56 6.38 -52.48 -0.34 2.22 16 33 H 0.40 6.44 8.83 -40.82 -0.36 6.08 16 34 H 0.40 4.40 8.49 -40.82 -0.35 4.05 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.05 0.31 8.01 -51.93 -0.42 -0.10 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.37 8.04 -51.93 -0.42 -0.05 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.12 3.06 6.44 -52.49 -0.34 2.72 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -33.32 389.80 -10.09 -43.40 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.24 Total: 12.11 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.19 Total: -9.47 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.18 Total: -44.40 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.69 Total: -21.40 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.32 -10.09 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476610876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.343 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds