Wall clock time and date at job start Tue Mar 31 2020 17:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48494 * 109.46945 * 270.00069 * 3 2 1 5 5 H 1.48494 * 109.47325 * 30.00128 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00240 * 3 2 1 7 7 C 1.39932 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99917 * 195.59646 * 7 2 1 9 9 C 1.41413 * 120.00202 * 15.59524 * 7 2 1 10 10 C 1.40770 * 120.21048 * 209.18270 * 9 7 2 11 11 C 1.37647 * 119.88528 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31697 * 0.02562 * 11 10 9 13 13 C 1.39240 * 120.42914 * 359.72120 * 12 11 10 14 14 N 1.39966 * 119.94636 * 180.30870 * 13 12 11 15 15 C 1.34768 * 120.00039 * 33.26959 * 14 13 12 16 16 O 1.21588 * 120.00098 * 5.14895 * 15 14 13 17 17 N 1.34773 * 120.00101 * 185.14773 * 15 14 13 18 18 C 1.46501 * 120.00293 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47233 * 180.02562 * 18 17 15 20 20 O 1.42897 * 109.47132 * 65.00155 * 19 18 17 21 21 C 1.42905 * 114.00161 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47006 * 179.97438 * 21 20 19 23 23 H 1.08995 * 110.75224 * 54.30485 * 22 21 20 24 24 C 1.55311 * 110.84558 * 177.77053 * 22 21 20 25 25 C 1.55206 * 100.82680 * 152.18018 * 24 22 21 26 26 O 1.43649 * 105.25783 * 323.81689 * 25 24 22 27 27 C 1.43241 * 109.97211 * 24.28601 * 26 25 24 28 28 C 1.38276 * 120.11114 * 0.55533 * 13 12 11 29 29 H 0.97006 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05856 * 0.04285 * 10 9 7 31 31 H 1.07995 * 119.84131 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.78240 * 180.02562 * 12 11 10 33 33 H 0.97000 * 119.99437 * 213.27646 * 14 13 12 34 34 H 0.97003 * 119.99845 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47032 * 300.00289 * 18 17 15 36 36 H 1.08998 * 109.46998 * 60.00423 * 18 17 15 37 37 H 1.08997 * 109.47257 * 184.99812 * 19 18 17 38 38 H 1.09004 * 109.47307 * 305.00378 * 19 18 17 39 39 H 1.08997 * 109.46989 * 300.00059 * 21 20 19 40 40 H 1.09006 * 109.46843 * 60.00007 * 21 20 19 41 41 H 1.08993 * 111.12675 * 270.24599 * 24 22 21 42 42 H 1.09002 * 111.12176 * 34.40692 * 24 22 21 43 43 H 1.08994 * 110.36877 * 204.80324 * 25 24 22 44 44 H 1.09000 * 110.21006 * 82.75097 * 25 24 22 45 45 H 1.08998 * 109.82806 * 238.77186 * 27 26 25 46 46 H 1.09005 * 109.90270 * 117.84325 * 27 26 25 47 47 H 1.07997 * 120.16178 * 179.72000 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0581 -1.2292 0.2509 9 6 1.3399 -2.4138 -0.3303 10 6 1.7701 -3.6368 0.2183 11 6 1.1153 -4.8028 -0.1076 12 6 0.0346 -4.7792 -0.9740 13 6 -0.4053 -3.5763 -1.5202 14 7 -1.5023 -3.5633 -2.3894 15 6 -2.5090 -4.4426 -2.2170 16 8 -2.5104 -5.1839 -1.2533 17 7 -3.5142 -4.5001 -3.1129 18 6 -4.6083 -5.4563 -2.9259 19 6 -5.6092 -5.3171 -4.0747 20 8 -4.9819 -5.6957 -5.3015 21 6 -5.8354 -5.6020 -6.4439 22 6 -5.0630 -6.0284 -7.6939 23 1 -4.6278 -7.0187 -7.5598 24 6 -5.9781 -5.9921 -8.9482 25 6 -4.9332 -5.7225 -10.0637 26 8 -3.9665 -4.8406 -9.4710 27 6 -3.9739 -4.9927 -8.0467 28 6 0.2430 -2.3951 -1.2093 29 1 -0.4850 0.8401 0.0004 30 1 2.6122 -3.6601 0.8941 31 1 1.4462 -5.7407 0.3133 32 1 -0.4732 -5.6992 -1.2235 33 1 -1.5378 -2.9215 -3.1158 34 1 -3.5129 -3.9089 -3.8820 35 1 -4.2072 -6.4697 -2.9147 36 1 -5.1102 -5.2537 -1.9798 37 1 -6.4665 -5.9645 -3.8901 38 1 -5.9435 -4.2818 -4.1420 39 1 -6.6971 -6.2556 -6.3082 40 1 -6.1748 -4.5727 -6.5604 41 1 -6.4786 -6.9488 -9.0972 42 1 -6.7008 -5.1786 -8.8838 43 1 -5.4075 -5.2432 -10.9200 44 1 -4.4580 -6.6551 -10.3680 45 1 -4.2046 -4.0380 -7.5741 46 1 -3.0013 -5.3483 -7.7064 47 1 -0.0947 -1.4623 -1.6361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476610876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:51 Heat of formation + Delta-G solvation = -126.589355 kcal Electronic energy + Delta-G solvation = -27738.696328 eV Core-core repulsion = 23692.179178 eV Total energy + Delta-G solvation = -4046.517149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41749 -40.51965 -39.30913 -38.72252 -36.15912 -35.70453 -35.04213 -33.83758 -31.49228 -31.12987 -30.33947 -29.22410 -27.13375 -26.43151 -24.12133 -23.27838 -23.09073 -22.66484 -21.65360 -21.56378 -19.60557 -19.15739 -18.09508 -17.80398 -17.54164 -17.13956 -16.95790 -16.59566 -16.47096 -16.22168 -15.83527 -15.75131 -15.55684 -15.00123 -14.62457 -14.53844 -14.29959 -14.20974 -14.06028 -13.75392 -13.58253 -13.03818 -12.92708 -12.78489 -12.62948 -12.57315 -12.41996 -12.20298 -12.12793 -11.88786 -11.83302 -11.70268 -11.66804 -11.25028 -11.08666 -10.73096 -10.59474 -10.50891 -10.11762 -9.27822 -8.73043 -8.54041 -6.34286 0.91192 1.06282 1.41322 1.53028 1.54300 1.73644 2.18631 2.24704 2.53224 2.80063 2.96618 3.31969 3.48399 3.73577 3.77613 3.86009 4.03381 4.20260 4.23610 4.32653 4.33900 4.45600 4.47553 4.56714 4.63942 4.66589 4.75852 4.80714 4.83076 4.87994 4.89877 4.92412 4.98507 5.13665 5.16207 5.22147 5.22746 5.35136 5.45994 5.77586 5.83661 6.01575 6.02199 6.10346 6.18555 6.21319 6.40862 6.70079 6.96737 6.99100 7.10311 7.58730 8.39709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.002164 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.595792 B =12934.215261 C =13890.545295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.095 3.905 10 C -0.245 4.245 11 C -0.086 4.086 12 C -0.237 4.237 13 C 0.170 3.830 14 N -0.674 5.674 15 C 0.697 3.303 16 O -0.618 6.618 17 N -0.724 5.724 18 C 0.138 3.862 19 C 0.060 3.940 20 O -0.406 6.406 21 C 0.072 3.928 22 C -0.120 4.120 23 H 0.088 0.912 24 C -0.139 4.139 25 C 0.040 3.960 26 O -0.415 6.415 27 C 0.055 3.945 28 C -0.199 4.199 29 H 0.286 0.714 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.412 0.588 34 H 0.410 0.590 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 -7.507 -18.242 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.096 0.904 9 C 0.092 3.908 10 C -0.265 4.265 11 C -0.105 4.105 12 C -0.258 4.258 13 C 0.076 3.924 14 N -0.321 5.321 15 C 0.398 3.602 16 O -0.498 6.498 17 N -0.381 5.381 18 C 0.015 3.985 19 C -0.016 4.016 20 O -0.326 6.326 21 C -0.004 4.004 22 C -0.138 4.138 23 H 0.106 0.894 24 C -0.176 4.176 25 C -0.035 4.035 26 O -0.335 6.335 27 C -0.022 4.022 28 C -0.222 4.222 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.417 -7.992 -17.530 25.972 hybrid contribution 0.159 1.101 -0.187 1.128 sum -17.258 -6.890 -17.717 25.675 Atomic orbital electron populations 1.69898 1.08907 1.30308 1.36611 1.26723 0.95505 1.04340 0.91256 0.85187 0.78955 0.75923 0.79502 1.18519 1.19556 1.18354 1.19752 0.97563 0.91881 1.43888 0.90424 1.17758 0.91202 0.93185 0.88683 1.21240 1.05135 0.93339 1.06737 1.20748 0.95142 0.97498 0.97072 1.20529 1.01579 0.95933 1.07755 1.17444 0.87621 0.93822 0.93539 1.42433 1.19077 1.37402 1.33194 1.16125 0.80148 0.80937 0.83016 1.90890 1.79495 1.46589 1.32855 1.44895 1.23443 1.42750 1.27058 1.21347 0.86628 0.92390 0.98169 1.22768 0.94743 1.01457 0.82631 1.87930 1.40047 1.88907 1.15741 1.22542 0.92755 1.01201 0.83904 1.22710 0.96263 1.00045 0.94811 0.89383 1.23298 0.97662 1.04834 0.91810 1.23635 0.88843 0.94113 0.96944 1.88395 1.61313 1.63750 1.20083 1.23190 0.99039 0.99240 0.80693 1.20869 1.02739 0.94653 1.03899 0.90352 0.87927 0.86213 0.87925 0.75191 0.75360 0.92320 0.90076 0.88939 0.90800 0.90825 0.91810 0.87497 0.89084 0.88354 0.91748 0.91017 0.92492 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.03 11.15 21.82 0.24 -43.78 16 2 C 0.04 1.82 5.15 85.25 0.44 2.26 16 3 Si 0.98 38.52 29.59 68.60 2.03 40.54 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.50 -27.41 9.04 23.46 0.21 -27.19 16 8 H 0.08 4.09 7.89 -2.91 -0.02 4.07 16 9 C 0.09 5.27 5.52 -21.31 -0.12 5.15 16 10 C -0.24 -12.68 9.79 22.75 0.22 -12.46 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 12 C -0.24 -11.83 8.66 22.58 0.20 -11.63 16 13 C 0.17 8.35 6.27 38.09 0.24 8.59 16 14 N -0.67 -26.65 5.35 -317.33 -1.70 -28.35 16 15 C 0.70 26.61 8.30 179.06 1.49 28.10 16 16 O -0.62 -29.02 14.01 -3.99 -0.06 -29.07 16 17 N -0.72 -19.04 5.51 -478.55 -2.64 -21.68 16 18 C 0.14 2.96 6.06 86.38 0.52 3.49 16 19 C 0.06 0.78 6.07 71.98 0.44 1.22 16 20 O -0.41 -6.43 10.19 -148.98 -1.52 -7.95 16 21 C 0.07 0.75 5.26 71.98 0.38 1.13 16 22 C -0.12 -1.44 3.26 -9.53 -0.03 -1.47 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 24 C -0.14 -1.08 6.64 32.14 0.21 -0.86 16 25 C 0.04 0.48 7.78 72.74 0.57 1.05 16 26 O -0.42 -8.34 11.36 -148.98 -1.69 -10.03 16 27 C 0.05 0.95 7.31 72.45 0.53 1.48 16 28 C -0.20 -10.65 8.57 22.85 0.20 -10.45 16 29 H 0.29 13.70 8.30 -92.70 -0.77 12.94 16 30 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.10 5.13 6.38 -2.91 -0.02 5.11 16 33 H 0.41 13.33 8.83 -92.71 -0.82 12.51 16 34 H 0.41 8.49 8.49 -92.71 -0.79 7.70 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.54 8.01 -2.38 -0.02 0.52 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.55 8.04 -2.39 -0.02 0.53 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 1.20 7.72 -2.39 -0.02 1.18 16 46 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.11 5.84 6.44 -2.91 -0.02 5.83 16 Total: -1.00 -73.72 389.80 -0.22 -73.95 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.61 Total: 41.91 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.71 Total: -15.55 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -4.09 Total: -93.81 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -3.27 Total: -47.05 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Total: -73.72 -0.22 -73.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476610876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.641 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds