Wall clock time and date at job start Tue Mar 31 2020 17:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85543 * 25.33487 * 10 9 7 12 12 C 1.53780 * 113.61180 * 156.53024 * 10 9 7 13 13 C 1.53790 * 87.08032 * 139.97918 * 12 10 9 14 14 H 1.08996 * 113.60987 * 89.11790 * 13 12 10 15 15 N 1.46499 * 113.61304 * 219.93223 * 13 12 10 16 16 C 1.34780 * 120.00236 * 205.00165 * 15 13 12 17 17 O 1.21279 * 119.99657 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00136 * 180.02562 * 16 15 13 19 19 O 1.42905 * 109.47182 * 179.97438 * 18 16 15 20 20 C 1.42893 * 114.00358 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47454 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.46532 * 64.99889 * 21 20 19 23 23 C 1.35902 * 116.99342 * 179.97438 * 22 21 20 24 24 C 1.38734 * 120.06017 * 359.73336 * 23 22 21 25 25 C 1.38141 * 119.94360 * 179.74104 * 24 23 22 26 26 C 1.38271 * 120.05497 * 0.50193 * 25 24 23 27 27 C 1.38262 * 120.11103 * 359.77349 * 26 25 24 28 28 C 1.38139 * 120.05725 * 359.97044 * 27 26 25 29 29 C 1.53785 * 113.61211 * 254.13669 * 10 9 7 30 30 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.08996 * 113.61985 * 254.52367 * 12 10 9 33 33 H 1.08999 * 113.61678 * 25.43320 * 12 10 9 34 34 H 0.97000 * 120.00207 * 25.00033 * 15 13 12 35 35 H 1.09002 * 109.47526 * 299.99899 * 18 16 15 36 36 H 1.09000 * 109.47475 * 59.99799 * 18 16 15 37 37 H 1.09004 * 109.47314 * 300.00174 * 20 19 18 38 38 H 1.09000 * 109.47231 * 59.99573 * 20 19 18 39 39 H 1.09003 * 109.47267 * 184.99379 * 21 20 19 40 40 H 1.08995 * 109.47008 * 305.00223 * 21 20 19 41 41 H 1.07998 * 120.02181 * 359.97438 * 24 23 22 42 42 H 1.07994 * 119.97482 * 180.27618 * 25 24 23 43 43 H 1.08000 * 119.94465 * 179.74340 * 26 25 24 44 44 H 1.08005 * 119.96895 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.02616 * 179.97438 * 28 27 26 46 46 H 1.08995 * 113.61712 * 334.56539 * 29 10 9 47 47 H 1.08996 * 113.61627 * 105.47820 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5377 -3.2913 -0.4302 12 6 5.5396 -2.3580 -0.5606 13 6 5.9717 -3.3168 0.5615 14 1 5.9061 -4.3693 0.2858 15 7 7.2579 -2.9670 1.1694 16 6 8.0010 -3.9184 1.7687 17 8 7.6046 -5.0640 1.8052 18 6 9.3238 -3.5584 2.3944 19 8 9.9166 -4.7285 2.9615 20 6 11.1819 -4.4959 3.5835 21 6 11.7195 -5.8102 4.1531 22 8 11.9855 -6.7195 3.0832 23 6 12.4725 -7.9428 3.4200 24 6 12.6951 -8.2595 4.7523 25 6 13.1851 -9.5055 5.0922 26 6 13.4635 -10.4330 4.1053 27 6 13.2479 -10.1178 2.7765 28 6 12.7531 -8.8751 2.4316 29 6 4.7531 -2.8121 1.3556 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 5.6506 -2.7778 -1.5603 33 1 5.9666 -1.3593 -0.4700 34 1 7.5748 -2.0507 1.1405 35 1 9.9864 -3.1478 1.6326 36 1 9.1657 -2.8161 3.1767 37 1 11.8830 -4.1054 2.8459 38 1 11.0628 -3.7725 4.3901 39 1 12.6403 -5.6179 4.7039 40 1 10.9789 -6.2453 4.8241 41 1 12.4818 -7.5337 5.5231 42 1 13.3543 -9.7541 6.1295 43 1 13.8504 -11.4052 4.3729 44 1 13.4666 -10.8440 2.0074 45 1 12.5853 -8.6293 1.3934 46 1 4.9647 -1.9377 1.9710 47 1 4.2300 -3.5980 1.9005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566843607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:27 Heat of formation + Delta-G solvation = -52.154650 kcal Electronic energy + Delta-G solvation = -26794.620348 eV Core-core repulsion = 22751.330930 eV Total energy + Delta-G solvation = -4043.289418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47384 -40.01573 -38.60353 -37.88860 -37.14801 -34.21534 -32.79518 -31.78229 -31.13705 -30.53552 -29.66484 -27.85420 -25.26338 -24.45273 -24.08556 -22.77661 -21.99655 -21.88207 -20.54734 -19.58311 -18.76641 -17.61841 -17.50163 -17.10306 -16.76420 -16.34514 -16.15042 -16.02860 -15.58642 -14.93713 -14.78070 -14.68349 -14.43613 -14.15621 -13.82650 -13.68819 -13.23264 -13.17051 -12.81524 -12.72951 -12.54877 -12.15473 -12.07679 -11.98210 -11.83147 -11.78940 -11.35853 -11.16188 -11.07604 -10.80738 -10.47631 -10.32375 -10.16908 -10.12703 -9.72877 -9.59585 -9.37350 -8.97717 -8.84634 -8.54953 -7.31318 -5.81236 -3.17430 0.97136 1.09831 2.57245 2.63458 2.78156 3.32357 3.34544 3.41085 3.43748 3.66996 4.31274 4.48235 4.52764 4.54066 4.58974 4.62179 4.74239 4.76865 4.81349 4.85606 4.88542 4.93483 5.01221 5.06206 5.09683 5.20103 5.21187 5.32358 5.39101 5.59890 5.63730 5.73642 5.94149 5.99427 6.03713 6.07914 6.16286 6.17224 6.32952 6.40240 6.52101 6.59086 6.63393 6.93125 7.06837 7.51033 7.95096 8.21676 8.38184 9.15452 9.87629 10.06984 11.36926 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.001514 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.216829 B =18487.212431 C =18862.623370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.735 5.735 10 C 0.174 3.826 11 H 0.088 0.912 12 C -0.161 4.161 13 C 0.120 3.880 14 H 0.112 0.888 15 N -0.715 5.715 16 C 0.511 3.489 17 O -0.520 6.520 18 C 0.043 3.957 19 O -0.355 6.355 20 C 0.061 3.939 21 C 0.062 3.938 22 O -0.305 6.305 23 C 0.134 3.866 24 C -0.212 4.212 25 C -0.081 4.081 26 C -0.163 4.163 27 C -0.081 4.081 28 C -0.152 4.152 29 C -0.176 4.176 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.548 -12.697 9.099 36.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.106 0.894 12 C -0.201 4.201 13 C 0.016 3.984 14 H 0.130 0.870 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.394 6.394 18 C -0.037 4.037 19 O -0.273 6.273 20 C -0.015 4.015 21 C -0.013 4.013 22 O -0.218 6.218 23 C 0.088 3.912 24 C -0.231 4.231 25 C -0.099 4.099 26 C -0.181 4.181 27 C -0.099 4.099 28 C -0.171 4.171 29 C -0.218 4.218 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 31.835 -13.684 8.912 35.779 hybrid contribution 0.861 2.094 0.381 2.296 sum 32.696 -11.590 9.294 35.913 Atomic orbital electron populations 1.69703 1.05121 1.25873 1.57190 1.24698 0.95252 0.97234 1.01867 0.86544 0.79180 0.85013 0.77712 1.21110 1.21676 1.20374 1.19153 0.80602 0.94879 1.43295 0.89009 1.42694 1.04108 1.01773 1.88869 1.21334 0.89252 0.90297 0.92882 0.89406 1.23871 0.99209 0.99026 0.97946 1.22527 0.80934 1.00114 0.94871 0.86986 1.45924 1.21452 1.11291 1.58019 1.20179 0.85449 0.85900 0.78873 1.90741 1.71720 1.19760 1.57214 1.22246 0.93793 0.89129 0.98524 1.88100 1.33614 1.30625 1.74942 1.22598 0.85864 0.95424 0.97659 1.22844 1.00055 0.88911 0.89476 1.86166 1.78746 1.21972 1.34904 1.19065 0.93651 0.85334 0.93142 1.21270 1.07521 0.99323 0.94983 1.20952 0.96734 0.92729 0.99495 1.21072 1.03957 1.00055 0.93003 1.20994 0.96876 0.95449 0.96537 1.20505 1.04425 0.93090 0.99067 1.24332 0.96041 1.00968 1.00452 0.93001 0.80503 0.91055 0.90164 0.76729 0.90207 0.90219 0.91813 0.90733 0.90297 0.90763 0.85547 0.85852 0.85959 0.85351 0.85109 0.90290 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.97 55.49 0.78 -28.21 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 21.58 27.73 -169.99 -4.71 16.86 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.93 10.45 -15.06 -0.16 -7.09 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 9 N -0.73 -16.81 5.21 -52.64 -0.27 -17.08 16 10 C 0.17 3.21 4.47 -67.12 -0.30 2.91 16 11 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 12 C -0.16 -2.30 7.58 -25.91 -0.20 -2.50 16 13 C 0.12 1.70 4.24 -67.02 -0.28 1.41 16 14 H 0.11 1.71 7.46 -51.93 -0.39 1.33 16 15 N -0.71 -8.37 5.36 -52.93 -0.28 -8.65 16 16 C 0.51 6.80 7.91 -10.99 -0.09 6.72 16 17 O -0.52 -9.52 16.10 -14.35 -0.23 -9.75 16 18 C 0.04 0.40 6.42 36.00 0.23 0.63 16 19 O -0.35 -4.10 9.84 -59.73 -0.59 -4.69 16 20 C 0.06 0.44 6.32 37.16 0.23 0.67 16 21 C 0.06 0.46 5.12 37.16 0.19 0.65 16 22 O -0.30 -3.27 10.10 -24.29 -0.25 -3.52 16 23 C 0.13 1.34 6.69 -39.21 -0.26 1.08 16 24 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 25 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 26 C -0.16 -1.16 10.04 -39.56 -0.40 -1.56 16 27 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 28 C -0.15 -1.42 9.99 -39.43 -0.39 -1.82 16 29 C -0.18 -2.91 7.70 -25.82 -0.20 -3.10 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.02 5.77 -40.82 -0.24 7.79 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.40 3.43 8.73 -40.82 -0.36 3.08 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.36 7.65 -51.93 -0.40 -0.03 16 40 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 41 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 45 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -36.80 395.97 -9.65 -46.45 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.19 Total: 8.66 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.87 Total: -6.04 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.22 Total: -53.95 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.06 Total: -17.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.80 -9.65 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566843607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.701 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds