Wall clock time and date at job start Tue Mar 31 2020 17:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85543 * 25.33487 * 10 9 7 12 12 C 1.53780 * 113.61180 * 156.53024 * 10 9 7 13 13 C 1.53790 * 87.08032 * 139.97918 * 12 10 9 14 14 H 1.08996 * 113.60987 * 89.11790 * 13 12 10 15 15 N 1.46499 * 113.61304 * 219.93223 * 13 12 10 16 16 C 1.34780 * 120.00236 * 205.00165 * 15 13 12 17 17 O 1.21279 * 119.99657 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00136 * 180.02562 * 16 15 13 19 19 O 1.42905 * 109.47182 * 179.97438 * 18 16 15 20 20 C 1.42893 * 114.00358 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47454 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.46532 * 64.99889 * 21 20 19 23 23 C 1.35902 * 116.99342 * 179.97438 * 22 21 20 24 24 C 1.38734 * 120.06017 * 359.73336 * 23 22 21 25 25 C 1.38141 * 119.94360 * 179.74104 * 24 23 22 26 26 C 1.38271 * 120.05497 * 0.50193 * 25 24 23 27 27 C 1.38262 * 120.11103 * 359.77349 * 26 25 24 28 28 C 1.38139 * 120.05725 * 359.97044 * 27 26 25 29 29 C 1.53785 * 113.61211 * 254.13669 * 10 9 7 30 30 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.08996 * 113.61985 * 254.52367 * 12 10 9 33 33 H 1.08999 * 113.61678 * 25.43320 * 12 10 9 34 34 H 0.97000 * 120.00207 * 25.00033 * 15 13 12 35 35 H 1.09002 * 109.47526 * 299.99899 * 18 16 15 36 36 H 1.09000 * 109.47475 * 59.99799 * 18 16 15 37 37 H 1.09004 * 109.47314 * 300.00174 * 20 19 18 38 38 H 1.09000 * 109.47231 * 59.99573 * 20 19 18 39 39 H 1.09003 * 109.47267 * 184.99379 * 21 20 19 40 40 H 1.08995 * 109.47008 * 305.00223 * 21 20 19 41 41 H 1.07998 * 120.02181 * 359.97438 * 24 23 22 42 42 H 1.07994 * 119.97482 * 180.27618 * 25 24 23 43 43 H 1.08000 * 119.94465 * 179.74340 * 26 25 24 44 44 H 1.08005 * 119.96895 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.02616 * 179.97438 * 28 27 26 46 46 H 1.08995 * 113.61712 * 334.56539 * 29 10 9 47 47 H 1.08996 * 113.61627 * 105.47820 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5377 -3.2913 -0.4302 12 6 5.5396 -2.3580 -0.5606 13 6 5.9717 -3.3168 0.5615 14 1 5.9061 -4.3693 0.2858 15 7 7.2579 -2.9670 1.1694 16 6 8.0010 -3.9184 1.7687 17 8 7.6046 -5.0640 1.8052 18 6 9.3238 -3.5584 2.3944 19 8 9.9166 -4.7285 2.9615 20 6 11.1819 -4.4959 3.5835 21 6 11.7195 -5.8102 4.1531 22 8 11.9855 -6.7195 3.0832 23 6 12.4725 -7.9428 3.4200 24 6 12.6951 -8.2595 4.7523 25 6 13.1851 -9.5055 5.0922 26 6 13.4635 -10.4330 4.1053 27 6 13.2479 -10.1178 2.7765 28 6 12.7531 -8.8751 2.4316 29 6 4.7531 -2.8121 1.3556 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 5.6506 -2.7778 -1.5603 33 1 5.9666 -1.3593 -0.4700 34 1 7.5748 -2.0507 1.1405 35 1 9.9864 -3.1478 1.6326 36 1 9.1657 -2.8161 3.1767 37 1 11.8830 -4.1054 2.8459 38 1 11.0628 -3.7725 4.3901 39 1 12.6403 -5.6179 4.7039 40 1 10.9789 -6.2453 4.8241 41 1 12.4818 -7.5337 5.5231 42 1 13.3543 -9.7541 6.1295 43 1 13.8504 -11.4052 4.3729 44 1 13.4666 -10.8440 2.0074 45 1 12.5853 -8.6293 1.3934 46 1 4.9647 -1.9377 1.9710 47 1 4.2300 -3.5980 1.9005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566843607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:26 Heat of formation + Delta-G solvation = -77.988132 kcal Electronic energy + Delta-G solvation = -26795.740572 eV Core-core repulsion = 22751.330930 eV Total energy + Delta-G solvation = -4044.409642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17841 -41.01267 -39.63908 -38.73396 -37.89850 -35.85825 -34.32431 -32.57614 -32.27545 -31.67433 -30.28448 -28.68454 -26.56918 -26.14739 -24.68229 -23.54240 -23.36429 -22.43913 -21.63567 -21.06749 -19.48774 -19.35479 -18.31311 -18.04044 -17.49333 -17.31392 -16.87633 -16.70492 -16.52246 -16.20063 -16.02249 -15.62595 -15.47839 -15.21765 -14.88637 -14.70656 -14.37163 -14.25691 -13.91286 -13.68250 -13.59773 -13.37329 -13.32742 -13.05894 -12.87107 -12.52158 -12.39965 -12.32044 -12.04151 -11.92395 -11.88898 -11.79791 -11.71779 -11.66464 -10.92534 -10.79243 -10.72766 -10.02235 -9.95738 -9.28240 -9.16375 -8.01735 -5.36038 0.38934 0.49662 1.38612 1.43952 1.51342 1.57652 1.82685 2.23432 2.49987 2.84783 2.94802 3.27906 3.61219 3.65854 3.79069 3.80837 3.86162 3.95560 4.05046 4.10943 4.11726 4.22634 4.24428 4.26544 4.31853 4.35146 4.42739 4.48530 4.53468 4.67135 4.71816 4.80117 4.84376 4.88852 5.08295 5.09651 5.14002 5.31427 5.35962 5.47827 5.60210 5.61905 5.77783 5.86532 6.04467 6.22562 6.47084 6.60300 7.08270 7.26786 7.83398 8.04539 9.19853 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.001514 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.216829 B =18487.212431 C =18862.623370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.239 4.239 8 H 0.052 0.948 9 N -0.736 5.736 10 C 0.151 3.849 11 H 0.072 0.928 12 C -0.136 4.136 13 C 0.134 3.866 14 H 0.098 0.902 15 N -0.700 5.700 16 C 0.505 3.495 17 O -0.580 6.580 18 C 0.048 3.952 19 O -0.398 6.398 20 C 0.058 3.942 21 C 0.054 3.946 22 O -0.331 6.331 23 C 0.109 3.891 24 C -0.220 4.220 25 C -0.086 4.086 26 C -0.167 4.167 27 C -0.085 4.085 28 C -0.178 4.178 29 C -0.171 4.171 30 H 0.258 0.742 31 H 0.370 0.630 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.422 -11.238 9.950 39.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.370 4.370 8 H 0.071 0.929 9 N -0.378 5.378 10 C 0.041 3.959 11 H 0.090 0.910 12 C -0.175 4.175 13 C 0.029 3.971 14 H 0.116 0.884 15 N -0.353 5.353 16 C 0.293 3.707 17 O -0.459 6.459 18 C -0.031 4.031 19 O -0.317 6.317 20 C -0.018 4.018 21 C -0.020 4.020 22 O -0.246 6.246 23 C 0.064 3.936 24 C -0.239 4.239 25 C -0.104 4.104 26 C -0.185 4.185 27 C -0.103 4.103 28 C -0.196 4.196 29 C -0.213 4.213 30 H 0.066 0.934 31 H 0.204 0.796 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.143 0.857 46 H 0.103 0.897 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 35.798 -12.220 9.765 39.066 hybrid contribution -0.354 1.481 0.159 1.531 sum 35.444 -10.739 9.924 38.342 Atomic orbital electron populations 1.69910 1.07402 1.26756 1.59541 1.25602 0.96170 1.01623 1.02425 0.85323 0.78835 0.78974 0.78088 1.20433 1.22530 1.16785 1.19102 0.82926 0.93430 1.41545 0.92949 1.42599 1.02269 1.03655 1.89268 1.21620 0.91042 0.88300 0.94927 0.90999 1.23675 0.95135 1.00233 0.98441 1.22117 0.81447 0.99416 0.94166 0.88411 1.45723 1.20167 1.12283 1.57097 1.21058 0.86717 0.85022 0.77948 1.90720 1.73337 1.22310 1.59502 1.22350 0.91603 0.89004 1.00172 1.88049 1.35551 1.32399 1.75739 1.22868 0.84345 0.95751 0.98812 1.23117 1.01181 0.88673 0.89069 1.86123 1.79114 1.22646 1.36694 1.19350 0.94640 0.85504 0.94131 1.21524 1.07408 1.00267 0.94668 1.21335 0.95905 0.92302 1.00890 1.21440 1.03297 1.01078 0.92711 1.21293 0.96260 0.95145 0.97636 1.20717 1.05736 0.94157 0.99040 1.24209 0.96969 1.00726 0.99359 0.93376 0.79622 0.89651 0.87927 0.74354 0.87021 0.86775 0.90640 0.87494 0.87446 0.91639 0.83963 0.83421 0.83595 0.83387 0.85665 0.89723 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.26 13.97 21.65 0.30 -62.96 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.03 27.73 68.60 1.90 45.93 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.24 -9.69 6.52 99.48 0.65 -9.05 16 7 C -0.24 -13.54 10.45 84.04 0.88 -12.66 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.74 -32.94 5.21 -320.44 -1.67 -34.61 16 10 C 0.15 5.47 4.47 45.52 0.20 5.67 16 11 H 0.07 2.80 8.11 -2.39 -0.02 2.78 16 12 C -0.14 -3.50 7.58 31.12 0.24 -3.27 16 13 C 0.13 3.59 4.24 45.58 0.19 3.78 16 14 H 0.10 2.98 7.46 -2.39 -0.02 2.96 16 15 N -0.70 -14.45 5.36 -439.76 -2.36 -16.80 16 16 C 0.51 12.59 7.91 87.65 0.69 13.28 16 17 O -0.58 -21.41 16.10 16.01 0.26 -21.15 16 18 C 0.05 0.73 6.42 71.23 0.46 1.19 16 19 O -0.40 -8.60 9.84 -125.55 -1.24 -9.83 16 20 C 0.06 0.69 6.32 71.98 0.45 1.14 16 21 C 0.05 0.75 5.12 71.98 0.37 1.12 16 22 O -0.33 -7.21 10.10 -87.80 -0.89 -8.10 16 23 C 0.11 2.22 6.69 22.51 0.15 2.37 16 24 C -0.22 -3.47 9.04 22.37 0.20 -3.27 16 25 C -0.09 -1.13 10.04 22.25 0.22 -0.90 16 26 C -0.17 -2.14 10.04 22.28 0.22 -1.91 16 27 C -0.09 -1.26 10.04 22.25 0.22 -1.04 16 28 C -0.18 -3.45 9.99 22.37 0.22 -3.23 16 29 C -0.17 -5.52 7.70 31.18 0.24 -5.28 16 30 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.37 15.30 5.77 -92.71 -0.53 14.76 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 34 H 0.42 5.39 8.73 -92.71 -0.81 4.58 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 38 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 0.78 7.65 -2.39 -0.02 0.76 16 40 H 0.07 0.98 7.68 -2.39 -0.02 0.96 16 41 H 0.14 1.61 6.30 -2.91 -0.02 1.60 16 42 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 46 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -85.16 395.97 1.33 -83.83 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.42 Total: 30.16 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.44 Total: -6.46 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -3.73 Total: -114.37 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.86 Total: -39.09 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -85.16 1.33 -83.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566843607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.841 kcal (2) G-P(sol) polarization free energy of solvation -85.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds