Wall clock time and date at job start Tue Mar 31 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47063 * 239.99953 * 3 2 1 5 5 H 1.48498 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46926 * 120.00055 * 3 2 1 7 7 C 1.38813 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00249 * 203.31693 * 7 2 1 9 9 N 1.36936 * 119.99932 * 23.58333 * 7 2 1 10 10 C 1.46500 * 119.99720 * 35.20184 * 9 7 2 11 11 C 1.50704 * 109.47020 * 89.99715 * 10 9 7 12 12 C 1.34442 * 125.71772 * 90.00320 * 11 10 9 13 13 C 1.41427 * 106.92146 * 179.97438 * 12 11 10 14 14 C 1.35359 * 106.77784 * 0.02562 * 13 12 11 15 15 N 1.39237 * 125.86385 * 180.02562 * 14 13 12 16 16 C 1.46847 * 111.00269 * 55.77862 * 15 14 13 17 17 C 1.53033 * 109.52369 * 185.84019 * 16 15 14 18 18 C 1.53119 * 109.28510 * 300.82503 * 17 16 15 19 19 C 1.53120 * 109.15700 * 57.65314 * 18 17 16 20 20 H 1.08998 * 109.50711 * 62.28722 * 19 18 17 21 21 C 1.50698 * 109.50303 * 182.40992 * 19 18 17 22 22 O 1.20828 * 120.00633 * 119.80316 * 21 19 18 23 23 O 1.34228 * 119.99856 * 299.80394 * 21 19 18 24 24 C 1.46847 * 111.00300 * 179.97438 * 15 14 13 25 25 O 1.34375 * 108.27410 * 359.75582 * 14 13 12 26 26 C 1.46500 * 119.99987 * 215.19714 * 9 7 2 27 27 C 1.53001 * 117.50033 * 8.81092 * 26 9 7 28 28 C 1.52991 * 117.50083 * 300.18794 * 26 9 7 29 29 H 0.96999 * 119.99883 * 4.59850 * 1 2 3 30 30 H 1.09004 * 109.47001 * 209.99350 * 10 9 7 31 31 H 1.09000 * 109.47322 * 329.99540 * 10 9 7 32 32 H 1.07994 * 126.53851 * 359.94978 * 12 11 10 33 33 H 1.07995 * 126.60766 * 179.97438 * 13 12 11 34 34 H 1.08999 * 109.46577 * 305.86436 * 16 15 14 35 35 H 1.09000 * 109.45757 * 65.83012 * 16 15 14 36 36 H 1.09001 * 109.50326 * 180.88305 * 17 16 15 37 37 H 1.09001 * 109.53411 * 60.79343 * 17 16 15 38 38 H 1.08998 * 109.52059 * 297.75372 * 18 17 16 39 39 H 1.08988 * 109.52719 * 177.56159 * 18 17 16 40 40 H 0.96698 * 116.99972 * 180.02562 * 23 21 19 41 41 H 1.09000 * 109.45854 * 294.17527 * 24 15 14 42 42 H 1.09005 * 109.45923 * 54.14400 * 24 15 14 43 43 H 1.09006 * 115.54521 * 154.52245 * 26 9 7 44 44 H 1.08996 * 117.49893 * 0.02562 * 27 26 9 45 45 H 1.09002 * 117.49617 * 145.01683 * 27 26 9 46 46 H 1.09011 * 117.50330 * 214.98172 * 28 26 9 47 47 H 1.09002 * 117.50416 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0241 -1.2405 0.3697 9 7 1.4114 -2.3383 -0.4755 10 6 0.4841 -2.2593 -1.6069 11 6 1.2481 -2.4261 -2.8952 12 6 1.4936 -3.5927 -3.5167 13 6 2.2355 -3.2901 -4.6821 14 6 2.4004 -1.9467 -4.7025 15 7 3.0762 -1.2226 -5.6811 16 6 2.5215 -1.4936 -7.0135 17 6 3.3769 -0.7979 -8.0747 18 6 3.3914 0.7091 -7.8043 19 6 3.9281 0.9611 -6.3925 20 1 4.9548 0.6017 -6.3239 21 6 3.8904 2.4382 -6.0962 22 8 3.2339 2.8521 -5.1701 23 8 4.5861 3.2941 -6.8611 24 6 3.0562 0.2146 -5.3802 25 8 1.7949 -1.4314 -3.6192 26 6 1.6980 -3.6328 0.1477 27 6 2.5067 -3.6280 1.4465 28 6 3.1511 -4.1114 0.1458 29 1 -0.4850 0.8373 -0.0673 30 1 -0.2614 -3.0500 -1.5217 31 1 -0.0130 -1.2893 -1.6023 32 1 1.1838 -4.5738 -3.1884 33 1 2.6008 -3.9951 -5.4141 34 1 2.5207 -2.5684 -7.1949 35 1 1.5003 -1.1159 -7.0654 36 1 2.9559 -0.9863 -9.0624 37 1 4.3950 -1.1850 -8.0334 38 1 2.3785 1.1034 -7.8847 39 1 4.0345 1.2037 -8.5321 40 1 4.5312 4.2320 -6.6319 41 1 2.0324 0.5839 -5.4400 42 1 3.4440 0.3806 -4.3751 43 1 0.9191 -4.3881 0.0421 44 1 2.8251 -2.6616 1.8375 45 1 2.2599 -4.3801 2.1958 46 1 3.3284 -5.1818 0.0394 47 1 3.8939 -3.4635 -0.3195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:48 Heat of formation + Delta-G solvation = -20.818773 kcal Electronic energy + Delta-G solvation = -29920.373773 eV Core-core repulsion = 25878.443180 eV Total energy + Delta-G solvation = -4041.930593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89337 -40.65764 -38.64576 -37.03247 -36.27002 -34.03256 -33.51480 -32.35904 -31.34195 -30.82906 -28.30513 -25.62594 -25.10706 -24.19903 -22.86799 -21.99942 -21.36133 -20.60167 -20.17747 -19.85058 -19.38910 -18.24203 -17.64201 -16.60110 -16.29567 -15.83626 -15.59529 -15.41718 -14.90334 -14.80178 -14.34893 -14.15233 -13.91192 -13.85864 -13.66791 -13.44303 -12.88483 -12.77890 -12.31656 -12.13654 -12.04257 -11.81815 -11.74888 -11.65143 -11.29088 -11.15028 -11.03880 -10.83590 -10.78956 -10.70048 -10.60188 -10.47425 -10.19302 -10.03776 -9.72830 -9.63948 -9.35142 -8.96544 -8.42152 -7.12657 -6.68414 -5.85676 -3.44567 2.06089 2.41069 2.71817 3.20899 3.39900 3.43469 3.46767 3.53624 4.17912 4.31537 4.46705 4.47114 4.60001 4.86065 4.94165 5.05218 5.16518 5.25164 5.28007 5.34775 5.43056 5.46425 5.50507 5.62809 5.69499 5.78942 5.84890 5.88875 5.90529 5.97479 6.09908 6.20521 6.25322 6.30960 6.35168 6.41362 6.49450 6.58965 6.67203 6.85071 6.98809 7.15730 7.20253 7.34756 7.46996 7.73431 7.76635 8.05885 8.40766 9.06081 9.70354 10.23355 11.11434 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.004367 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.156688 B = 6410.447314 C = 8151.574766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.020 3.980 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.538 5.538 10 C 0.208 3.792 11 C 0.023 3.977 12 C -0.225 4.225 13 C -0.216 4.216 14 C 0.134 3.866 15 N -0.435 5.435 16 C 0.049 3.951 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.076 4.076 20 H 0.121 0.879 21 C 0.481 3.519 22 O -0.502 6.502 23 O -0.517 6.517 24 C 0.063 3.937 25 O -0.180 6.180 26 C 0.125 3.875 27 C -0.191 4.191 28 C -0.223 4.223 29 H 0.257 0.743 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.410 0.590 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -1.398 -16.777 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.181 4.181 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.253 5.253 10 C 0.081 3.919 11 C -0.032 4.032 12 C -0.246 4.246 13 C -0.239 4.239 14 C -0.011 4.011 15 N -0.157 5.157 16 C -0.076 4.076 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.095 4.095 20 H 0.138 0.862 21 C 0.322 3.678 22 O -0.388 6.388 23 O -0.329 6.329 24 C -0.064 4.064 25 O -0.074 6.074 26 C 0.016 3.984 27 C -0.229 4.229 28 C -0.264 4.264 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.268 0.732 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.547 -1.332 -16.458 17.419 hybrid contribution 0.030 1.582 0.079 1.585 sum 5.577 0.250 -16.379 17.304 Atomic orbital electron populations 1.70040 1.05574 1.26638 1.49864 1.25029 0.94917 0.98745 0.99366 0.86536 0.79621 0.83269 0.78504 1.20413 1.21429 1.20625 1.18884 0.95241 0.86001 1.38788 0.91844 1.43347 1.51219 1.01619 1.29093 1.19693 0.89477 1.04788 0.77979 1.24597 0.98278 0.84825 0.95489 1.21251 1.07234 0.98544 0.97578 1.20975 1.08328 0.92634 1.01931 1.20271 0.99891 0.91429 0.89475 1.59742 1.48054 1.07618 1.00298 1.22436 0.96730 1.01864 0.86576 1.21608 1.01588 0.93922 0.98050 1.21619 1.01954 0.97566 0.93983 1.21012 1.04020 0.86841 0.97648 0.86159 1.23336 0.75533 0.89817 0.79117 1.90820 1.39424 1.79345 1.29256 1.84501 1.67490 1.22976 1.57954 1.21925 0.99611 0.85395 0.99435 1.84171 1.54924 1.37819 1.30534 1.21122 0.90968 0.89784 0.96490 1.23062 1.06571 1.02278 0.91015 1.23352 1.01138 0.99089 1.02817 0.93264 0.91568 0.87160 0.84475 0.84638 0.89308 0.93602 0.90142 0.90227 0.91346 0.89901 0.73155 0.92355 0.88421 0.89340 0.88260 0.90588 0.90823 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 11.44 55.49 0.63 -24.46 16 2 C 0.02 0.57 4.92 -17.43 -0.09 0.48 16 3 Si 0.89 22.59 29.62 -169.99 -5.03 17.56 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.26 -7.11 8.26 -15.06 -0.12 -7.24 16 8 H 0.06 1.77 7.09 -52.49 -0.37 1.40 16 9 N -0.54 -13.30 2.77 -167.02 -0.46 -13.77 16 10 C 0.21 4.86 5.87 -5.19 -0.03 4.83 16 11 C 0.02 0.50 6.90 -35.65 -0.25 0.25 16 12 C -0.23 -4.29 10.80 -39.71 -0.43 -4.72 16 13 C -0.22 -3.80 10.16 -39.40 -0.40 -4.20 16 14 C 0.13 2.52 6.57 -15.21 -0.10 2.42 16 15 N -0.43 -6.65 4.73 -173.76 -0.82 -7.47 16 16 C 0.05 0.57 5.31 -3.84 -0.02 0.55 16 17 C -0.11 -0.94 6.09 -26.65 -0.16 -1.10 16 18 C -0.11 -1.01 5.22 -26.61 -0.14 -1.15 16 19 C -0.08 -0.89 2.79 -91.69 -0.26 -1.15 16 20 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 21 C 0.48 6.18 7.63 36.00 0.27 6.45 16 22 O -0.50 -8.75 16.74 -18.75 -0.31 -9.07 16 23 O -0.52 -4.76 13.36 -39.25 -0.52 -5.29 16 24 C 0.06 1.01 3.50 -3.83 -0.01 0.99 16 25 O -0.18 -4.09 9.81 4.61 0.05 -4.04 16 26 C 0.13 2.67 6.59 -67.93 -0.45 2.22 16 27 C -0.19 -3.83 9.77 -26.73 -0.26 -4.09 16 28 C -0.22 -4.38 10.25 -26.74 -0.27 -4.65 16 29 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 30 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 31 H 0.11 2.92 5.43 -51.93 -0.28 2.64 16 32 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.14 1.99 7.84 -52.49 -0.41 1.58 16 34 H 0.09 0.94 7.37 -51.93 -0.38 0.55 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.60 8.14 -51.94 -0.42 0.18 16 40 H 0.41 2.20 9.10 45.56 0.41 2.61 16 41 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.10 1.87 7.94 -51.93 -0.41 1.46 16 43 H 0.09 1.71 8.12 -51.93 -0.42 1.29 16 44 H 0.10 2.20 6.70 -51.93 -0.35 1.86 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 47 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.92 385.80 -9.80 -42.71 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.42 Total: 8.12 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.72 Total: -10.10 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.65 Total: -45.70 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.79 Total: -18.40 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.92 -9.80 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.894 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds