Wall clock time and date at job start Tue Mar 31 2020 18:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47063 * 239.99953 * 3 2 1 5 5 H 1.48498 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46926 * 120.00055 * 3 2 1 7 7 C 1.38813 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00249 * 203.31693 * 7 2 1 9 9 N 1.36936 * 119.99932 * 23.58333 * 7 2 1 10 10 C 1.46500 * 119.99720 * 35.20184 * 9 7 2 11 11 C 1.50704 * 109.47020 * 89.99715 * 10 9 7 12 12 C 1.34442 * 125.71772 * 90.00320 * 11 10 9 13 13 C 1.41427 * 106.92146 * 179.97438 * 12 11 10 14 14 C 1.35359 * 106.77784 * 0.02562 * 13 12 11 15 15 N 1.39237 * 125.86385 * 180.02562 * 14 13 12 16 16 C 1.46847 * 111.00269 * 55.77862 * 15 14 13 17 17 C 1.53033 * 109.52369 * 185.84019 * 16 15 14 18 18 C 1.53119 * 109.28510 * 300.82503 * 17 16 15 19 19 C 1.53120 * 109.15700 * 57.65314 * 18 17 16 20 20 H 1.08998 * 109.50711 * 62.28722 * 19 18 17 21 21 C 1.50698 * 109.50303 * 182.40992 * 19 18 17 22 22 O 1.20828 * 120.00633 * 119.80316 * 21 19 18 23 23 O 1.34228 * 119.99856 * 299.80394 * 21 19 18 24 24 C 1.46847 * 111.00300 * 179.97438 * 15 14 13 25 25 O 1.34375 * 108.27410 * 359.75582 * 14 13 12 26 26 C 1.46500 * 119.99987 * 215.19714 * 9 7 2 27 27 C 1.53001 * 117.50033 * 8.81092 * 26 9 7 28 28 C 1.52991 * 117.50083 * 300.18794 * 26 9 7 29 29 H 0.96999 * 119.99883 * 4.59850 * 1 2 3 30 30 H 1.09004 * 109.47001 * 209.99350 * 10 9 7 31 31 H 1.09000 * 109.47322 * 329.99540 * 10 9 7 32 32 H 1.07994 * 126.53851 * 359.94978 * 12 11 10 33 33 H 1.07995 * 126.60766 * 179.97438 * 13 12 11 34 34 H 1.08999 * 109.46577 * 305.86436 * 16 15 14 35 35 H 1.09000 * 109.45757 * 65.83012 * 16 15 14 36 36 H 1.09001 * 109.50326 * 180.88305 * 17 16 15 37 37 H 1.09001 * 109.53411 * 60.79343 * 17 16 15 38 38 H 1.08998 * 109.52059 * 297.75372 * 18 17 16 39 39 H 1.08988 * 109.52719 * 177.56159 * 18 17 16 40 40 H 0.96698 * 116.99972 * 180.02562 * 23 21 19 41 41 H 1.09000 * 109.45854 * 294.17527 * 24 15 14 42 42 H 1.09005 * 109.45923 * 54.14400 * 24 15 14 43 43 H 1.09006 * 115.54521 * 154.52245 * 26 9 7 44 44 H 1.08996 * 117.49893 * 0.02562 * 27 26 9 45 45 H 1.09002 * 117.49617 * 145.01683 * 27 26 9 46 46 H 1.09011 * 117.50330 * 214.98172 * 28 26 9 47 47 H 1.09002 * 117.50416 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0241 -1.2405 0.3697 9 7 1.4114 -2.3383 -0.4755 10 6 0.4841 -2.2593 -1.6069 11 6 1.2481 -2.4261 -2.8952 12 6 1.4936 -3.5927 -3.5167 13 6 2.2355 -3.2901 -4.6821 14 6 2.4004 -1.9467 -4.7025 15 7 3.0762 -1.2226 -5.6811 16 6 2.5215 -1.4936 -7.0135 17 6 3.3769 -0.7979 -8.0747 18 6 3.3914 0.7091 -7.8043 19 6 3.9281 0.9611 -6.3925 20 1 4.9548 0.6017 -6.3239 21 6 3.8904 2.4382 -6.0962 22 8 3.2339 2.8521 -5.1701 23 8 4.5861 3.2941 -6.8611 24 6 3.0562 0.2146 -5.3802 25 8 1.7949 -1.4314 -3.6192 26 6 1.6980 -3.6328 0.1477 27 6 2.5067 -3.6280 1.4465 28 6 3.1511 -4.1114 0.1458 29 1 -0.4850 0.8373 -0.0673 30 1 -0.2614 -3.0500 -1.5217 31 1 -0.0130 -1.2893 -1.6023 32 1 1.1838 -4.5738 -3.1884 33 1 2.6008 -3.9951 -5.4141 34 1 2.5207 -2.5684 -7.1949 35 1 1.5003 -1.1159 -7.0654 36 1 2.9559 -0.9863 -9.0624 37 1 4.3950 -1.1850 -8.0334 38 1 2.3785 1.1034 -7.8847 39 1 4.0345 1.2037 -8.5321 40 1 4.5312 4.2320 -6.6319 41 1 2.0324 0.5839 -5.4400 42 1 3.4440 0.3806 -4.3751 43 1 0.9191 -4.3881 0.0421 44 1 2.8251 -2.6616 1.8375 45 1 2.2599 -4.3801 2.1958 46 1 3.3284 -5.1818 0.0394 47 1 3.8939 -3.4635 -0.3195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:47 Heat of formation + Delta-G solvation = -42.500385 kcal Electronic energy + Delta-G solvation = -29921.313959 eV Core-core repulsion = 25878.443180 eV Total energy + Delta-G solvation = -4042.870778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.40907 -41.71855 -39.73169 -38.77334 -37.25811 -35.56478 -34.90270 -33.94074 -32.71312 -32.30431 -29.96643 -27.26952 -26.10848 -25.80560 -24.33497 -23.06586 -22.95616 -21.95173 -21.72086 -21.25286 -20.70657 -19.33053 -18.89505 -18.40010 -17.52177 -17.34175 -17.04780 -16.81159 -16.26991 -16.04228 -15.91185 -15.72069 -15.46275 -15.16246 -14.68814 -14.60976 -14.35086 -13.85267 -13.77645 -13.65875 -13.54515 -13.43055 -13.13837 -12.82201 -12.76433 -12.73558 -12.68263 -12.21101 -12.20860 -12.15511 -11.93978 -11.90420 -11.73322 -11.51134 -11.47312 -11.00523 -10.98105 -10.48681 -10.40973 -8.70635 -8.56129 -7.93229 -5.55752 0.91926 1.03549 1.29166 1.36813 1.42042 1.66161 1.84414 2.06656 2.38613 2.87003 3.07943 3.31571 3.42086 3.52728 3.52891 3.82662 3.99017 4.02657 4.21164 4.28348 4.29531 4.30671 4.38843 4.44982 4.47260 4.53661 4.56161 4.62055 4.70318 4.73586 4.84795 4.94407 4.97374 5.03340 5.04885 5.10959 5.16708 5.29897 5.33588 5.37200 5.47353 5.52835 5.57729 5.62268 5.77544 6.05412 6.30910 6.56019 6.84976 7.01634 7.72396 8.19831 8.97118 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.004367 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.156688 B = 6410.447314 C = 8151.574766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.021 4.021 3 Si 0.933 3.067 4 H -0.298 1.298 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.255 4.255 8 H 0.050 0.950 9 N -0.555 5.555 10 C 0.212 3.788 11 C -0.021 4.021 12 C -0.202 4.202 13 C -0.214 4.214 14 C 0.126 3.874 15 N -0.430 5.430 16 C 0.043 3.957 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.070 4.070 20 H 0.139 0.861 21 C 0.489 3.511 22 O -0.560 6.560 23 O -0.498 6.498 24 C 0.071 3.929 25 O -0.220 6.220 26 C 0.103 3.897 27 C -0.188 4.188 28 C -0.203 4.203 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.429 0.571 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -3.596 -19.593 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.219 4.219 3 Si 0.762 3.238 4 H -0.226 1.226 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.068 0.932 9 N -0.271 5.271 10 C 0.086 3.914 11 C -0.075 4.075 12 C -0.223 4.223 13 C -0.236 4.236 14 C -0.018 4.018 15 N -0.153 5.153 16 C -0.082 4.082 17 C -0.142 4.142 18 C -0.145 4.145 19 C -0.090 4.090 20 H 0.157 0.843 21 C 0.332 3.668 22 O -0.451 6.451 23 O -0.311 6.311 24 C -0.057 4.057 25 O -0.116 6.116 26 C -0.004 4.004 27 C -0.226 4.226 28 C -0.244 4.244 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.124 0.876 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.290 0.710 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.110 -3.534 -19.296 20.866 hybrid contribution -0.358 2.240 0.837 2.418 sum 6.752 -1.294 -18.460 19.698 Atomic orbital electron populations 1.70113 1.06173 1.26523 1.51700 1.25465 0.95464 1.00519 1.00475 0.85877 0.78654 0.81393 0.77865 1.22578 1.21407 1.19218 1.18902 0.94628 0.87409 1.37530 0.93245 1.43497 1.51302 1.02138 1.30189 1.19450 0.89757 1.03385 0.78832 1.24249 1.01034 0.85881 0.96291 1.21558 1.05329 0.98344 0.97029 1.21327 1.07762 0.92412 1.02072 1.21048 0.99025 0.92739 0.89028 1.59875 1.47500 1.06630 1.01269 1.22710 0.97015 1.03467 0.84960 1.21653 1.01807 0.92585 0.98120 1.21679 1.02113 0.98667 0.92047 1.21033 1.04063 0.85646 0.98213 0.84337 1.23546 0.74448 0.90647 0.78148 1.90815 1.42113 1.80332 1.31839 1.84446 1.65962 1.24212 1.56518 1.21698 0.98817 0.86568 0.98629 1.84120 1.56072 1.39245 1.32188 1.21442 0.92625 0.88948 0.97430 1.23071 1.06060 1.01897 0.91610 1.23269 0.98927 1.00490 1.01667 0.93766 0.89605 0.90980 0.81984 0.80975 0.87613 0.94485 0.86793 0.88961 0.91897 0.86940 0.70954 0.94963 0.93189 0.86718 0.91229 0.87234 0.87184 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.07 11.44 21.65 0.25 -53.82 16 2 C -0.02 -1.22 4.92 84.86 0.42 -0.81 16 3 Si 0.93 48.98 29.62 68.60 2.03 51.01 16 4 H -0.30 -16.49 7.11 99.48 0.71 -15.78 16 5 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 6 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.25 -14.54 8.26 84.03 0.69 -13.85 16 8 H 0.05 2.90 7.09 -2.91 -0.02 2.88 16 9 N -0.55 -28.18 2.77 -682.33 -1.89 -30.07 16 10 C 0.21 10.31 5.87 85.63 0.50 10.82 16 11 C -0.02 -0.97 6.90 24.82 0.17 -0.80 16 12 C -0.20 -7.42 10.80 22.19 0.24 -7.18 16 13 C -0.21 -7.09 10.16 22.39 0.23 -6.86 16 14 C 0.13 4.78 6.57 82.85 0.54 5.33 16 15 N -0.43 -13.00 4.73 -813.39 -3.85 -16.85 16 16 C 0.04 0.88 5.31 86.32 0.46 1.34 16 17 C -0.10 -1.30 6.09 30.64 0.19 -1.11 16 18 C -0.11 -1.59 5.22 30.67 0.16 -1.43 16 19 C -0.07 -1.60 2.79 -11.49 -0.03 -1.63 16 20 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.49 12.54 7.63 71.24 0.54 13.08 16 22 O -0.56 -20.70 16.74 21.96 0.37 -20.33 16 23 O -0.50 -8.22 13.36 -51.39 -0.69 -8.91 16 24 C 0.07 2.36 3.50 86.33 0.30 2.66 16 25 O -0.22 -10.55 9.81 -6.43 -0.06 -10.61 16 26 C 0.10 4.31 6.59 44.99 0.30 4.60 16 27 C -0.19 -7.34 9.77 30.59 0.30 -7.04 16 28 C -0.20 -7.64 10.25 30.59 0.31 -7.33 16 29 H 0.25 14.81 8.32 -92.71 -0.77 14.04 16 30 H 0.09 3.66 8.06 -2.38 -0.02 3.64 16 31 H 0.07 4.08 5.43 -2.39 -0.01 4.06 16 32 H 0.16 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.17 4.35 7.84 -2.91 -0.02 4.33 16 34 H 0.11 1.84 7.37 -2.39 -0.02 1.82 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.43 3.85 9.10 -74.06 -0.67 3.18 16 41 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 42 H 0.05 2.11 7.94 -2.38 -0.02 2.09 16 43 H 0.12 4.16 8.12 -2.38 -0.02 4.14 16 44 H 0.07 3.14 6.70 -2.39 -0.02 3.12 16 45 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 46 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -78.15 385.80 1.79 -76.36 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.31 Total: 23.44 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.32 Total: -10.22 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.50 Total: -100.74 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.38 Total: -39.85 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -78.15 1.79 -76.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.861 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds