Wall clock time and date at job start Tue Mar 31 2020 18:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99675 * 2 1 4 4 H 1.48496 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47095 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47513 * 59.99756 * 3 2 1 7 7 C 1.38811 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99822 * 207.10906 * 7 2 1 9 9 N 1.36931 * 120.00016 * 27.10772 * 7 2 1 10 10 C 1.46506 * 119.99641 * 34.50265 * 9 7 2 11 11 C 1.50694 * 109.47168 * 90.00212 * 10 9 7 12 12 C 1.34434 * 125.72726 * 89.71455 * 11 10 9 13 13 C 1.41425 * 106.92755 * 179.85207 * 12 11 10 14 14 C 1.35357 * 106.77716 * 0.40552 * 13 12 11 15 15 N 1.39246 * 125.85980 * 179.72644 * 14 13 12 16 16 C 1.46839 * 111.00328 * 304.21239 * 15 14 13 17 17 C 1.53039 * 109.52332 * 174.16341 * 16 15 14 18 18 C 1.53120 * 109.27842 * 59.17986 * 17 16 15 19 19 C 1.53118 * 109.15886 * 302.34320 * 18 17 16 20 20 H 1.09007 * 109.53667 * 297.69551 * 19 18 17 21 21 C 1.50698 * 109.50389 * 177.59532 * 19 18 17 22 22 O 1.20821 * 120.00221 * 240.19887 * 21 19 18 23 23 O 1.34232 * 119.99600 * 60.20077 * 21 19 18 24 24 C 1.46846 * 110.99641 * 180.02562 * 15 14 13 25 25 O 1.34367 * 108.27377 * 359.75164 * 14 13 12 26 26 C 1.46499 * 120.00406 * 214.49496 * 9 7 2 27 27 C 1.53005 * 117.49524 * 10.99018 * 26 9 7 28 28 C 1.52997 * 117.49945 * 302.33482 * 26 9 7 29 29 H 0.96998 * 119.99785 * 186.12748 * 1 2 3 30 30 H 1.09007 * 109.46711 * 209.99440 * 10 9 7 31 31 H 1.08998 * 109.46955 * 329.99395 * 10 9 7 32 32 H 1.08003 * 126.53306 * 359.97438 * 12 11 10 33 33 H 1.08003 * 126.61045 * 180.15711 * 13 12 11 34 34 H 1.09003 * 109.46343 * 294.17214 * 16 15 14 35 35 H 1.09001 * 109.46747 * 54.14779 * 16 15 14 36 36 H 1.09005 * 109.50223 * 299.23714 * 17 16 15 37 37 H 1.09005 * 109.53800 * 179.13731 * 17 16 15 38 38 H 1.09007 * 109.52069 * 182.44543 * 18 17 16 39 39 H 1.08996 * 109.57967 * 62.28416 * 18 17 16 40 40 H 0.96702 * 116.99909 * 179.97438 * 23 21 19 41 41 H 1.09005 * 109.46516 * 305.85644 * 24 15 14 42 42 H 1.09000 * 109.46435 * 65.83582 * 24 15 14 43 43 H 1.09003 * 115.55300 * 156.65124 * 26 9 7 44 44 H 1.09006 * 117.49811 * 0.02562 * 27 26 9 45 45 H 1.09000 * 117.49714 * 145.01835 * 27 26 9 46 46 H 1.09007 * 117.49748 * 214.97579 * 28 26 9 47 47 H 1.08998 * 117.50097 * 359.96824 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0013 -1.2532 0.4268 9 7 1.4385 -2.3231 -0.5393 10 6 0.5605 -2.2079 -1.7064 11 6 1.3801 -2.3265 -2.9654 12 6 1.6630 -3.4700 -3.6131 13 6 2.4484 -3.1232 -4.7369 14 6 2.6071 -1.7794 -4.7030 15 7 3.3219 -1.0190 -5.6248 16 6 4.7050 -1.4979 -5.7424 17 6 5.4161 -0.7371 -6.8638 18 6 5.4002 0.7609 -6.5475 19 6 3.9502 1.2243 -6.3823 20 1 3.4117 1.0776 -7.3186 21 6 3.9278 2.6850 -6.0125 22 8 3.4284 3.0368 -4.9701 23 8 4.4627 3.5953 -6.8414 24 6 3.2821 0.4065 -5.2745 25 8 1.9568 -1.3054 -3.6270 26 6 1.7049 -3.6376 0.0500 27 6 2.4116 -3.6735 1.4066 28 6 3.1641 -4.0889 0.1400 29 1 -0.4850 -0.8352 0.0897 30 1 -0.1838 -3.0040 -1.6811 31 1 0.0585 -1.2405 -1.6893 32 1 1.3485 -4.4638 -3.3304 33 1 2.8483 -3.8006 -5.4770 34 1 5.2287 -1.3304 -4.8012 35 1 4.7022 -2.5636 -5.9716 36 1 4.9011 -0.9153 -7.8079 37 1 6.4474 -1.0818 -6.9412 38 1 5.8674 1.3107 -7.3646 39 1 5.9490 0.9451 -5.6239 40 1 4.4243 4.5202 -6.5614 41 1 2.2454 0.7245 -5.1637 42 1 3.8128 0.5648 -4.3356 43 1 0.9529 -4.4019 -0.1460 44 1 2.6779 -2.7190 1.8607 45 1 2.1248 -4.4616 2.1028 46 1 3.3720 -5.1502 0.0034 47 1 3.9258 -3.4080 -0.2397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:51 Heat of formation + Delta-G solvation = -22.168095 kcal Electronic energy + Delta-G solvation = -30042.229150 eV Core-core repulsion = 26000.240046 eV Total energy + Delta-G solvation = -4041.989104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94587 -40.64727 -38.64453 -37.21967 -36.25295 -34.14728 -33.69186 -32.42296 -31.33631 -30.73663 -28.27095 -25.63065 -25.09681 -24.07139 -22.85649 -22.00275 -21.47350 -20.63270 -20.25449 -19.93361 -19.41219 -18.23292 -17.65045 -17.00995 -16.35822 -15.90930 -15.66269 -15.56826 -14.91853 -14.73377 -14.39481 -14.18623 -13.93996 -13.67231 -13.59620 -13.42044 -12.97065 -12.81264 -12.46821 -12.24666 -12.13777 -11.90512 -11.75073 -11.63985 -11.39949 -11.25104 -11.02759 -10.83731 -10.81077 -10.69351 -10.45992 -10.44145 -10.08135 -9.97409 -9.72460 -9.53626 -9.42686 -9.02747 -8.36473 -7.18884 -6.88665 -6.13354 -3.46021 2.07710 2.32426 2.73445 3.21125 3.36076 3.50420 3.59725 3.67410 4.14029 4.32404 4.48473 4.52613 4.61998 4.83214 4.87366 5.07059 5.08818 5.17958 5.29183 5.34715 5.44374 5.47708 5.53809 5.61509 5.66931 5.75387 5.76912 5.80987 5.88077 5.98914 6.00472 6.06790 6.14811 6.23403 6.29489 6.35696 6.39187 6.46492 6.57590 6.72341 6.87446 6.96483 7.07029 7.21286 7.36385 7.75132 7.94820 8.05412 8.46394 8.97575 9.68582 10.08442 11.05151 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011255 B = 0.004450 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.188622 B = 6290.906317 C = 7843.772564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.007 4.007 3 Si 1.057 2.943 4 H -0.292 1.292 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.352 4.352 8 H 0.055 0.945 9 N -0.546 5.546 10 C 0.198 3.802 11 C 0.021 3.979 12 C -0.222 4.222 13 C -0.217 4.217 14 C 0.137 3.863 15 N -0.435 5.435 16 C 0.048 3.952 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.075 4.075 20 H 0.120 0.880 21 C 0.480 3.520 22 O -0.500 6.500 23 O -0.517 6.517 24 C 0.062 3.938 25 O -0.179 6.179 26 C 0.122 3.878 27 C -0.190 4.190 28 C -0.220 4.220 29 H 0.271 0.729 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.060 -1.459 -14.793 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.211 4.211 3 Si 0.886 3.114 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.481 4.481 8 H 0.073 0.927 9 N -0.262 5.262 10 C 0.071 3.929 11 C -0.034 4.034 12 C -0.243 4.243 13 C -0.239 4.239 14 C -0.008 4.008 15 N -0.157 5.157 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.094 4.094 20 H 0.138 0.862 21 C 0.321 3.679 22 O -0.386 6.386 23 O -0.330 6.330 24 C -0.065 4.065 25 O -0.073 6.073 26 C 0.014 3.986 27 C -0.229 4.229 28 C -0.261 4.261 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.517 0.200 -15.030 17.277 hybrid contribution 0.795 -1.140 0.887 1.649 sum 9.312 -0.939 -14.142 16.959 Atomic orbital electron populations 1.70741 1.06879 1.30453 1.45281 1.25834 0.96220 1.01538 0.97519 0.83662 0.74734 0.75880 0.77128 1.21822 1.20791 1.21889 1.19767 0.99195 0.88666 1.40462 0.92700 1.43494 1.55316 1.01630 1.25738 1.19727 0.90212 1.03855 0.79081 1.24296 0.99768 0.84144 0.95159 1.21218 1.06440 0.98611 0.98049 1.20972 1.08012 0.92562 1.02379 1.20306 1.01493 0.91574 0.87407 1.59778 1.13281 1.02772 1.39863 1.22449 0.86106 1.00418 0.98750 1.21604 1.00769 0.93706 0.98999 1.21629 0.93447 0.97013 1.03155 1.21000 0.99777 0.86515 1.02129 0.86215 1.23326 0.74079 0.89212 0.81282 1.90833 1.41445 1.81638 1.24710 1.84500 1.75055 1.21816 1.51597 1.21936 1.03158 0.85550 0.95848 1.84184 1.54255 1.37769 1.31056 1.21123 0.91959 0.89191 0.96346 1.23085 1.06252 1.02336 0.91180 1.23309 0.99576 0.99367 1.03815 0.91770 0.91310 0.88441 0.84510 0.84543 0.93414 0.89356 0.90271 0.90123 0.89881 0.91245 0.73131 0.88558 0.92053 0.89303 0.88181 0.90542 0.90775 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 12.16 55.49 0.67 -25.49 16 2 C -0.01 -0.20 4.83 -17.43 -0.08 -0.28 16 3 Si 1.06 26.49 30.00 -169.99 -5.10 21.39 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.35 -9.67 8.16 -15.06 -0.12 -9.79 16 8 H 0.06 1.57 7.14 -52.49 -0.37 1.19 16 9 N -0.55 -13.35 2.58 -167.02 -0.43 -13.78 16 10 C 0.20 4.58 5.41 -5.19 -0.03 4.55 16 11 C 0.02 0.46 6.90 -35.65 -0.25 0.21 16 12 C -0.22 -4.24 10.80 -39.71 -0.43 -4.66 16 13 C -0.22 -3.81 10.16 -39.40 -0.40 -4.21 16 14 C 0.14 2.58 6.57 -15.21 -0.10 2.48 16 15 N -0.43 -6.62 4.74 -173.76 -0.82 -7.44 16 16 C 0.05 0.59 5.31 -3.84 -0.02 0.56 16 17 C -0.11 -0.97 6.09 -26.65 -0.16 -1.14 16 18 C -0.11 -1.06 5.22 -26.61 -0.14 -1.20 16 19 C -0.07 -0.86 2.79 -91.69 -0.26 -1.12 16 20 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.48 6.07 7.63 36.00 0.27 6.35 16 22 O -0.50 -8.65 16.74 -18.75 -0.31 -8.97 16 23 O -0.52 -4.67 13.36 -39.26 -0.52 -5.20 16 24 C 0.06 0.98 3.50 -3.83 -0.01 0.96 16 25 O -0.18 -4.06 9.81 4.59 0.05 -4.02 16 26 C 0.12 2.58 6.60 -67.93 -0.45 2.13 16 27 C -0.19 -3.79 9.78 -26.69 -0.26 -4.05 16 28 C -0.22 -4.31 10.18 -26.70 -0.27 -4.58 16 29 H 0.27 7.85 7.20 -40.82 -0.29 7.55 16 30 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 31 H 0.10 2.55 5.33 -51.93 -0.28 2.28 16 32 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.14 2.00 7.84 -52.48 -0.41 1.59 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.41 2.13 9.10 45.56 0.41 2.55 16 41 H 0.10 1.72 7.93 -51.93 -0.41 1.31 16 42 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 44 H 0.10 2.24 6.76 -51.93 -0.35 1.89 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -33.32 384.88 -9.75 -43.07 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.37 Total: 8.41 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.71 Total: -13.77 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.58 Total: -46.72 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.79 Total: -18.18 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -5.10 Total: 21.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.32 -9.75 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.901 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds