Wall clock time and date at job start Tue Mar 31 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00601 * 2 1 4 4 C 1.53001 * 109.47688 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46980 * 64.99911 * 4 3 2 6 6 C 1.46498 * 120.00125 * 273.97581 * 5 4 3 7 7 C 1.50704 * 109.46953 * 263.64025 * 6 5 4 8 8 H 1.07995 * 119.99715 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99973 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00024 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00090 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47016 * 90.00380 * 11 9 7 13 13 H 1.48498 * 109.47373 * 210.00059 * 11 9 7 14 14 H 1.48501 * 109.47209 * 330.00373 * 11 9 7 15 15 C 1.34771 * 120.00049 * 93.97233 * 5 4 3 16 16 O 1.21365 * 120.00162 * 354.61540 * 15 5 4 17 17 C 1.49348 * 120.00336 * 174.61419 * 15 5 4 18 18 O 1.21383 * 120.00056 * 0.24125 * 17 15 5 19 19 N 1.34781 * 120.00431 * 180.23817 * 17 15 5 20 20 C 1.39724 * 120.00021 * 184.88397 * 19 17 15 21 21 C 1.38950 * 120.07633 * 326.24444 * 20 19 17 22 22 C 1.38075 * 119.92252 * 180.02562 * 21 20 19 23 23 C 1.50705 * 119.96249 * 180.02562 * 22 21 20 24 24 C 1.38315 * 120.07863 * 359.97438 * 22 21 20 25 25 C 1.38281 * 120.14828 * 0.29950 * 24 22 21 26 26 C 1.38112 * 120.07617 * 359.44757 * 25 24 22 27 27 C 1.50698 * 120.03980 * 180.25066 * 26 25 24 28 28 H 1.09007 * 109.46368 * 300.00175 * 1 2 3 29 29 H 1.09003 * 109.46860 * 59.99512 * 1 2 3 30 30 H 1.08991 * 109.47715 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47174 * 60.00298 * 3 2 1 32 32 H 1.09003 * 109.47415 * 300.00380 * 3 2 1 33 33 H 1.08999 * 109.46821 * 305.00296 * 4 3 2 34 34 H 1.08991 * 109.47619 * 184.99796 * 4 3 2 35 35 H 1.09001 * 109.47362 * 23.63594 * 6 5 4 36 36 H 1.08998 * 109.47655 * 143.63494 * 6 5 4 37 37 H 0.97000 * 119.99919 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99696 * 4.88239 * 19 17 15 39 39 H 1.07999 * 120.03721 * 0.05284 * 21 20 19 40 40 H 1.09003 * 109.46442 * 269.97821 * 23 22 21 41 41 H 1.09004 * 109.46832 * 29.97460 * 23 22 21 42 42 H 1.08999 * 109.47166 * 149.98041 * 23 22 21 43 43 H 1.08000 * 119.92653 * 180.02562 * 24 22 21 44 44 H 1.08001 * 119.95550 * 179.72292 * 25 24 22 45 45 H 1.08997 * 109.47448 * 270.27891 * 27 26 25 46 46 H 1.09001 * 109.46854 * 30.27541 * 27 26 25 47 47 H 1.09000 * 109.47118 * 150.27058 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.0218 -0.8953 -1.3707 7 6 5.4222 -1.3777 -1.0927 8 1 6.2001 -0.6681 -0.8527 9 6 5.7105 -2.7250 -1.1458 10 7 6.9327 -3.1459 -0.9038 11 14 4.3651 -3.9524 -1.5616 12 1 4.3193 -4.1575 -3.0317 13 1 4.6501 -5.2458 -0.8900 14 1 3.0562 -3.4295 -1.0938 15 6 4.3382 1.3363 -2.2963 16 8 4.2078 2.5413 -2.2338 17 6 4.9005 0.7091 -3.5296 18 8 5.0269 -0.4964 -3.5938 19 7 5.2675 1.4816 -4.5713 20 6 5.6973 0.8905 -5.7621 21 6 6.4039 -0.3056 -5.7304 22 6 6.8276 -0.8867 -6.9090 23 6 7.5935 -2.1841 -6.8757 24 6 6.5490 -0.2799 -8.1204 25 6 5.8510 0.9132 -8.1552 26 6 5.4196 1.4973 -6.9804 27 6 4.6540 2.7948 -7.0197 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.6888 1.8462 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8515 0.5680 0.8409 34 1 3.9787 2.1762 0.0889 35 1 3.3348 -1.3399 -0.6506 36 1 3.7302 -1.1878 -2.3793 37 1 7.1354 -4.0938 -0.9408 38 1 5.2331 2.4479 -4.4942 39 1 6.6210 -0.7803 -4.7849 40 1 8.6610 -1.9742 -6.8084 41 1 7.2826 -2.7674 -6.0090 42 1 7.3910 -2.7491 -7.7856 43 1 6.8813 -0.7368 -9.0409 44 1 5.6390 1.3866 -9.1026 45 1 5.3522 3.6303 -6.9700 46 1 4.0840 2.8523 -7.9470 47 1 3.9720 2.8401 -6.1706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132962877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:10 Heat of formation + Delta-G solvation = -71.405554 kcal Electronic energy + Delta-G solvation = -29930.604547 eV Core-core repulsion = 25886.480346 eV Total energy + Delta-G solvation = -4044.124200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68632 -39.36495 -37.97706 -37.36554 -35.64037 -34.53482 -33.05196 -32.43400 -30.21123 -29.63895 -29.10752 -27.64331 -26.27000 -25.03321 -24.45251 -22.88876 -22.47232 -21.44292 -20.36245 -19.21751 -17.30654 -17.05245 -16.72272 -16.40725 -15.90735 -15.65110 -15.42273 -15.29133 -15.21346 -14.65082 -14.40038 -14.06410 -13.80578 -13.69318 -13.45413 -13.15242 -13.07781 -12.70465 -12.57087 -12.52879 -12.10789 -11.98789 -11.90814 -11.75849 -11.70378 -11.50138 -11.22213 -11.05804 -10.97402 -10.91177 -10.59098 -10.37721 -10.11942 -9.96846 -9.54346 -9.47000 -8.71381 -8.45530 -8.30820 -7.95886 -7.77769 -6.00534 -3.96594 1.38115 1.59602 2.12740 2.84892 3.38070 3.43416 3.47243 3.71422 3.95170 4.00215 4.06627 4.49883 4.86021 4.94610 4.96902 5.22510 5.23151 5.27537 5.33190 5.35803 5.45623 5.47684 5.49036 5.51725 5.58582 5.63955 5.71821 5.73539 5.83325 5.85482 5.94784 6.03616 6.16885 6.19373 6.33161 6.49223 6.52512 6.64443 6.68071 6.87714 7.06677 7.19279 7.30560 7.31650 7.53885 7.65523 7.92618 8.24612 8.51286 8.62068 8.99056 9.60921 11.12746 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.004813 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.206409 B = 5816.139063 C = 7717.836062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.546 5.546 6 C 0.201 3.799 7 C -0.512 4.512 8 H 0.070 0.930 9 C 0.081 3.919 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.263 1.263 15 C 0.510 3.490 16 O -0.560 6.560 17 C 0.491 3.509 18 O -0.434 6.434 19 N -0.659 5.659 20 C 0.157 3.843 21 C -0.118 4.118 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.139 4.139 25 C -0.103 4.103 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.262 0.738 38 H 0.415 0.585 39 H 0.151 0.849 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 9.358 -9.009 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.275 5.275 6 C 0.081 3.919 7 C -0.551 4.551 8 H 0.088 0.912 9 C -0.121 4.121 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.188 1.188 15 C 0.292 3.708 16 O -0.442 6.442 17 C 0.273 3.727 18 O -0.302 6.302 19 N -0.307 5.307 20 C 0.062 3.938 21 C -0.138 4.138 22 C -0.072 4.072 23 C -0.172 4.172 24 C -0.158 4.158 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.169 4.169 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.252 0.748 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.683 8.702 -8.878 14.114 hybrid contribution -0.781 -0.102 -0.164 0.805 sum -7.464 8.599 -9.042 14.540 Atomic orbital electron populations 1.22700 0.81872 1.02504 0.99385 1.88037 1.18954 1.27473 1.95262 1.23007 0.94717 0.85059 1.00247 1.21574 0.91558 1.00146 0.87320 1.47857 1.59268 1.09764 1.10660 1.20346 0.98858 0.73501 0.99154 1.21112 0.93478 0.93188 1.47283 0.91152 1.24679 0.95109 0.97978 0.94355 1.69895 1.18976 1.15077 1.49951 0.86929 0.83193 0.80932 0.79194 1.19964 1.21498 1.18768 1.19781 0.79770 0.86391 0.84848 1.90651 1.56889 1.14157 1.82456 1.20320 0.80399 0.87534 0.84486 1.90923 1.47255 1.13097 1.78939 1.43176 1.65221 1.10943 1.11359 1.17565 0.96592 0.94978 0.84634 1.21465 0.96773 0.95564 0.99990 1.19823 0.97986 0.96831 0.92570 1.20800 0.99467 0.93972 1.02921 1.20943 1.01331 0.96294 0.97224 1.20704 0.98988 0.95744 0.96748 1.19628 1.02360 0.99002 0.91652 1.20702 0.99308 0.94060 1.02857 0.94449 0.94507 0.89854 0.92575 0.93140 0.88647 0.88616 0.93705 0.93013 0.92788 0.74779 0.83130 0.91216 0.90840 0.91851 0.86386 0.86106 0.91332 0.91429 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.28 9.27 -35.23 -0.33 -6.61 16 3 C 0.05 0.70 6.28 37.16 0.23 0.93 16 4 C 0.12 2.01 5.83 -4.04 -0.02 1.98 16 5 N -0.55 -11.38 2.46 -175.61 -0.43 -11.81 16 6 C 0.20 4.83 3.58 -5.19 -0.02 4.81 16 7 C -0.51 -14.23 8.34 -34.44 -0.29 -14.52 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 10 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 11 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 15 C 0.51 10.41 7.67 -11.64 -0.09 10.32 16 16 O -0.56 -11.11 16.05 5.48 0.09 -11.02 16 17 C 0.49 10.03 7.58 -11.63 -0.09 9.95 16 18 O -0.43 -10.22 9.46 5.47 0.05 -10.16 16 19 N -0.66 -11.17 4.76 -10.29 -0.05 -11.22 16 20 C 0.16 2.61 6.30 -83.75 -0.53 2.08 16 21 C -0.12 -2.14 8.36 -39.38 -0.33 -2.47 16 22 C -0.07 -1.11 5.88 -104.65 -0.62 -1.72 16 23 C -0.11 -1.58 10.01 36.01 0.36 -1.22 16 24 C -0.14 -1.83 9.70 -39.54 -0.38 -2.21 16 25 C -0.10 -1.29 9.70 -39.61 -0.38 -1.67 16 26 C -0.12 -1.70 5.90 -104.42 -0.62 -2.31 16 27 C -0.11 -1.20 9.47 36.00 0.34 -0.86 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 34 H 0.10 1.51 7.38 -51.93 -0.38 1.13 16 35 H 0.05 1.09 5.96 -51.93 -0.31 0.78 16 36 H 0.05 1.30 5.27 -51.93 -0.27 1.03 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.41 6.11 7.28 -40.82 -0.30 5.81 16 39 H 0.15 3.23 6.11 -52.49 -0.32 2.91 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 47 H 0.06 0.73 7.16 -51.93 -0.37 0.36 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -33.02 386.23 -7.19 -40.21 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.03 Total: 7.40 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.41 Total: 6.83 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.29 Total: -49.65 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.19 Total: -27.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.02 -7.19 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132962877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.198 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds