Wall clock time and date at job start Tue Mar 31 2020 18:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99856 * 2 1 4 4 C 1.38820 * 120.01303 * 90.00368 * 3 2 1 5 5 C 1.50709 * 119.95294 * 0.02562 * 4 3 2 6 6 C 1.38178 * 120.09953 * 180.02562 * 4 3 2 7 7 C 1.38149 * 120.12698 * 359.97438 * 6 4 3 8 8 C 1.38944 * 120.03600 * 359.97438 * 7 6 4 9 9 N 1.39722 * 120.05232 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99543 * 336.07766 * 9 8 7 11 11 O 1.21372 * 120.00102 * 354.12448 * 10 9 8 12 12 C 1.49352 * 119.99707 * 174.40343 * 10 9 8 13 13 O 1.21361 * 120.00181 * 0.44227 * 12 10 9 14 14 N 1.34780 * 119.99810 * 180.43953 * 12 10 9 15 15 C 1.46494 * 119.99979 * 354.42907 * 14 12 10 16 16 C 1.46500 * 119.99747 * 174.42720 * 14 12 10 17 17 H 1.09003 * 109.47297 * 0.02562 * 16 14 12 18 18 C 1.52998 * 109.47252 * 120.00254 * 16 14 12 19 19 C 1.50705 * 109.47191 * 240.00152 * 16 14 12 20 20 H 1.08000 * 119.99714 * 359.97438 * 19 16 14 21 21 C 1.37874 * 120.00137 * 180.02562 * 19 16 14 22 22 N 1.31516 * 120.00247 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99969 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46580 * 60.00245 * 23 21 19 25 25 H 1.48501 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47530 * 300.00457 * 23 21 19 27 27 C 1.38563 * 120.02522 * 270.23951 * 3 2 1 28 28 C 1.50707 * 120.06278 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47281 * 299.99401 * 1 2 3 30 30 H 1.09002 * 109.47444 * 59.99304 * 1 2 3 31 31 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46747 * 270.02302 * 5 4 3 33 33 H 1.08996 * 109.46756 * 30.01823 * 5 4 3 34 34 H 1.08994 * 109.47205 * 150.02249 * 5 4 3 35 35 H 1.08002 * 119.94170 * 180.02562 * 6 4 3 36 36 H 1.07998 * 119.98563 * 179.97438 * 7 6 4 37 37 H 0.96996 * 120.00384 * 156.07327 * 9 8 7 38 38 H 1.08998 * 109.47352 * 83.82266 * 15 14 12 39 39 H 1.09010 * 109.47019 * 203.81501 * 15 14 12 40 40 H 1.08998 * 109.47239 * 323.81159 * 15 14 12 41 41 H 1.09004 * 109.47236 * 299.99692 * 18 16 14 42 42 H 1.09003 * 109.47064 * 59.99742 * 18 16 14 43 43 H 1.09002 * 109.47448 * 180.02562 * 18 16 14 44 44 H 0.96999 * 120.00338 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.46721 * 270.23228 * 28 27 3 46 46 H 1.08994 * 109.46889 * 30.22826 * 28 27 3 47 47 H 1.09000 * 109.47400 * 150.22987 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3612 1.8296 1.2021 5 6 2.0193 1.1571 2.5068 6 6 2.9880 3.0610 1.2041 7 6 3.3035 3.6805 0.0103 8 6 2.9914 3.0657 -1.1960 9 7 3.3099 3.6921 -2.4036 10 6 3.4591 5.0309 -2.4494 11 8 3.2132 5.7028 -1.4690 12 6 3.9211 5.6881 -3.7084 13 8 4.1545 5.0175 -4.6927 14 7 4.0789 7.0259 -3.7515 15 6 3.6819 7.8476 -2.6056 16 6 4.6474 7.6583 -4.9445 17 1 4.8793 6.8935 -5.6857 18 6 3.6353 8.6450 -5.5301 19 6 5.9080 8.3946 -4.5703 20 1 6.2510 8.3921 -3.5463 21 6 6.6227 9.0723 -5.5351 22 7 6.2041 9.0767 -6.7819 23 14 8.1848 9.9855 -5.0712 24 1 9.1676 9.0281 -4.5030 25 1 8.7612 10.6265 -6.2804 26 1 7.8680 11.0273 -4.0615 27 6 2.3562 1.8309 -1.1997 28 6 2.0096 1.1641 -2.5060 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.0209 1.4609 2.8214 33 1 2.0456 0.0754 2.3758 34 1 2.7442 1.4488 3.2667 35 1 3.2325 3.5398 2.1408 36 1 3.7931 4.6431 0.0146 37 1 3.4237 3.1636 -3.2089 38 1 4.4884 7.8627 -1.8725 39 1 3.4769 8.8643 -2.9411 40 1 2.7849 7.4274 -2.1505 41 1 2.7235 8.1125 -5.8008 42 1 3.4029 9.4099 -4.7891 43 1 4.0581 9.1152 -6.4180 44 1 6.7067 9.5538 -7.4606 45 1 2.8400 0.5332 -2.8233 46 1 1.1173 0.5519 -2.3758 47 1 1.8211 1.9248 -3.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190139481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:34 Heat of formation + Delta-G solvation = -66.501861 kcal Electronic energy + Delta-G solvation = -29102.452002 eV Core-core repulsion = 25058.540442 eV Total energy + Delta-G solvation = -4043.911560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16094 -40.04742 -38.46948 -37.25594 -35.92294 -35.01820 -32.93073 -32.54335 -31.15194 -29.57064 -28.28839 -26.96896 -26.35251 -26.14237 -25.30144 -24.19278 -22.46955 -21.17449 -20.49507 -19.37838 -18.24756 -17.53256 -16.61604 -16.34229 -16.22814 -15.93006 -15.82802 -15.35140 -15.25535 -14.80528 -14.46458 -14.24299 -13.83549 -13.57069 -13.54617 -13.33060 -13.31871 -12.90059 -12.65633 -12.43759 -12.33787 -12.20607 -12.08831 -11.87629 -11.67157 -11.61051 -11.24503 -11.13051 -10.87857 -10.81136 -10.72304 -10.38772 -10.27910 -10.23212 -10.21687 -9.28677 -8.90160 -8.67074 -8.50063 -8.04678 -7.78398 -6.14878 -4.23715 0.95141 1.07394 1.87450 2.58463 3.25273 3.25915 3.30240 3.32583 3.59024 3.80325 3.98290 4.34062 4.55452 4.68145 4.71366 4.87405 4.96178 4.99666 5.10654 5.16714 5.22018 5.29190 5.33748 5.37351 5.42395 5.48363 5.61962 5.77852 5.91755 5.96216 6.09922 6.14522 6.18456 6.28721 6.40067 6.48818 6.64244 6.70309 6.72217 6.92088 7.07471 7.23252 7.30872 7.34221 7.61720 7.79168 7.93871 8.04348 8.29841 8.53333 8.81386 9.42803 10.90453 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.002518 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.661313 B =11115.907362 C =11614.375838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.091 4.091 7 C -0.129 4.129 8 C 0.161 3.839 9 N -0.646 5.646 10 C 0.508 3.492 11 O -0.496 6.496 12 C 0.493 3.507 13 O -0.536 6.536 14 N -0.551 5.551 15 C 0.081 3.919 16 C 0.255 3.745 17 H 0.067 0.933 18 C -0.148 4.148 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.887 5.887 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 C -0.130 4.130 28 C -0.112 4.112 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.423 0.577 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.014 0.986 42 H 0.034 0.966 43 H 0.097 0.903 44 H 0.265 0.735 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 -14.631 14.360 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.248 6.248 3 C 0.065 3.935 4 C -0.124 4.124 5 C -0.164 4.164 6 C -0.110 4.110 7 C -0.149 4.149 8 C 0.065 3.935 9 N -0.292 5.292 10 C 0.292 3.708 11 O -0.370 6.370 12 C 0.274 3.726 13 O -0.415 6.415 14 N -0.281 5.281 15 C -0.062 4.062 16 C 0.156 3.844 17 H 0.084 0.916 18 C -0.206 4.206 19 C -0.568 4.568 20 H 0.079 0.921 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.133 4.133 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.053 0.947 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.226 -14.486 14.263 23.223 hybrid contribution 0.800 0.528 -0.130 0.967 sum -10.426 -13.958 14.133 22.434 Atomic orbital electron populations 1.22982 0.79208 1.03031 1.00812 1.85995 1.19641 1.24870 1.94298 1.17925 0.98423 0.86316 0.90848 1.20138 1.02063 0.95250 0.94905 1.20647 1.01415 1.00845 0.93504 1.20822 0.98330 0.93800 0.98023 1.21516 1.00968 1.02102 0.90280 1.17450 0.97738 0.92416 0.85859 1.43305 1.67405 1.07501 1.11014 1.20965 0.77554 0.82101 0.90183 1.90646 1.46853 1.62629 1.36878 1.19572 0.81468 0.84239 0.87325 1.90723 1.51995 1.63230 1.35556 1.48280 1.56653 1.04193 1.18971 1.21986 1.00424 0.95969 0.87842 1.19185 0.91267 0.92610 0.81375 0.91552 1.22111 0.96562 0.99115 1.02832 1.21244 1.07615 1.32508 0.95474 0.92060 1.24883 0.97860 0.96114 0.94774 1.69861 1.39274 1.42417 1.00913 0.86496 0.82882 0.79833 0.77865 1.20174 1.21092 1.20104 1.19829 1.02344 0.95024 0.96064 1.20659 1.02544 1.00413 0.93293 0.93540 0.93478 0.88880 0.91699 0.91082 0.91492 0.85198 0.83043 0.73877 0.92775 0.90997 0.90404 0.96719 0.94737 0.88431 0.92468 0.90576 0.90995 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.76 101.05 1.09 1.33 16 2 O -0.33 -3.46 8.68 -19.43 -0.17 -3.63 16 3 C 0.11 1.27 5.66 -39.25 -0.22 1.04 16 4 C -0.12 -1.33 5.90 -104.42 -0.62 -1.95 16 5 C -0.11 -0.88 9.79 36.01 0.35 -0.52 16 6 C -0.09 -1.03 9.69 -39.64 -0.38 -1.41 16 7 C -0.13 -1.74 8.72 -39.35 -0.34 -2.08 16 8 C 0.16 2.20 6.42 -83.77 -0.54 1.66 16 9 N -0.65 -9.39 4.97 -10.31 -0.05 -9.44 16 10 C 0.51 8.71 7.57 -11.63 -0.09 8.62 16 11 O -0.50 -8.59 10.38 5.48 0.06 -8.53 16 12 C 0.49 10.14 7.72 -11.63 -0.09 10.05 16 13 O -0.54 -12.14 15.83 5.49 0.09 -12.05 16 14 N -0.55 -11.90 2.75 -175.81 -0.48 -12.38 16 15 C 0.08 1.49 8.48 59.84 0.51 2.00 16 16 C 0.25 6.38 2.62 -69.08 -0.18 6.20 16 17 H 0.07 1.88 6.91 -51.93 -0.36 1.53 16 18 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 19 C -0.53 -14.11 8.37 -34.44 -0.29 -14.40 16 20 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 23 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.13 -1.57 5.91 -104.27 -0.62 -2.19 16 28 C -0.11 -1.13 9.22 36.01 0.33 -0.80 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.33 7.23 -51.93 -0.38 -0.04 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.58 7.53 -51.93 -0.39 0.19 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.15 2.22 5.73 -52.49 -0.30 1.92 16 37 H 0.42 5.66 6.85 -40.82 -0.28 5.38 16 38 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 39 H 0.07 1.30 6.44 -51.92 -0.33 0.97 16 40 H 0.08 1.32 5.83 -51.93 -0.30 1.02 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 43 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.64 6.30 -51.93 -0.33 0.32 16 47 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -30.01 379.34 -6.69 -36.70 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.61 Total: 5.61 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.85 Total: 6.11 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.09 Total: -45.69 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.02 Total: -24.21 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.01 -6.69 -36.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190139481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.799 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds